Csor.00g061520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g061520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	alkaline ceramidase
Location	Csor_Chr03: 5695754 .. 5696095 (+)
RNA-Seq Expression	Csor.00g061520
Synteny	Csor.00g061520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTGGCCATTGGTAGTATGTTCTTCCATGCCACATTGCAAAAAGTTTCGTTCCTCTTCCCCTATGGAGTCATGTTCGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGAATCTTTGCCTCCTCTGCGTACCTCGGATGTACAAGTATTATATGTGCACACAAGATACCTCGGCTAAGCGGTTAGCAAAGCTGTACTCGTCGACGTTTCTCTTAGGCATTTTCTGTTGGGTCATCGATCGGGGTACTGCAAGAAGATATCAGATTGGATCATCAATCCTTAAGGTCATGCCTTGTGGCATGTTTTCATGGGTTTGA

mRNA sequence

ATGATACTGGCCATTGGTAGTATGTTCTTCCATGCCACATTGCAAAAAGTTTCGTTCCTCTTCCCCTATGGAGTCATGTTCGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGAATCTTTGCCTCCTCTGCGTACCTCGGATGTACAAGTATTATATGTGCACACAAGATACCTCGGCTAAGCGGTTAGCAAAGCTGTACTCGTCGACGTTTCTCTTAGGCATTTTCTGTTGGGTCATCGATCGGGGTACTGCAAGAAGATATCAGATTGGATCATCAATCCTTAAGGTCATGCCTTGTGGCATGTTTTCATGGGTTTGA

Coding sequence (CDS)

ATGATACTGGCCATTGGTAGTATGTTCTTCCATGCCACATTGCAAAAAGTTTCGTTCCTCTTCCCCTATGGAGTCATGTTCGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGAATCTTTGCCTCCTCTGCGTACCTCGGATGTACAAGTATTATATGTGCACACAAGATACCTCGGCTAAGCGGTTAGCAAAGCTGTACTCGTCGACGTTTCTCTTAGGCATTTTCTGTTGGGTCATCGATCGGGGTACTGCAAGAAGATATCAGATTGGATCATCAATCCTTAAGGTCATGCCTTGTGGCATGTTTTCATGGGTTTGA

Protein sequence

MILAIGSMFFHATLQKVSFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILKVMPCGMFSWV

Homology

[Close]

BLAST of Csor.00g061520 vs. ExPASy Swiss-Prot
Match: Q94IB9 (Alkaline ceramidase OS=Arabidopsis thaliana OX=3702 GN=ACER PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-24
Identity = 60/121 (49.59%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSM +HATLQ V                                +FLF YG  FA
Sbjct: 69  MILAIGSMLYHATLQHVQQQSDETPMVWEILLYMYILYSPDWHYRSTMPTFLFLYGAAFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 90
           + H+ LR+ IGFKVHYV LCLLC+PRMYKYY+ T+DT+AKR+AK Y +T L+G  CW  D
Sbjct: 129 IVHAYLRFGIGFKVHYVILCLLCIPRMYKYYIHTEDTAAKRIAKWYVATILVGSICWFCD 188

[Close]

BLAST of Csor.00g061520 vs. NCBI nr
Match: KAG6603812.1 (Alkaline ceramidase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (600), Expect = 3.43e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKVSFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM 60
           MILAIGSMFFHATLQKVSFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM
Sbjct: 1   MILAIGSMFFHATLQKVSFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM 60

Query: 61  CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILKVMPCGMFSWV 113
           CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILKVMPCGMFSWV
Sbjct: 61  CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILKVMPCGMFSWV 113

[Close]

BLAST of Csor.00g061520 vs. NCBI nr
Match: KAG7033992.1 (Alkaline ceramidase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (531), Expect = 1.94e-67
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKVSFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM 60
           MILAIGSMFFHATLQKV FLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM
Sbjct: 1   MILAIGSMFFHATLQKVWFLFPYGVMFAVAHSILRYDIGFKVHYVNLCLLCVPRMYKYYM 60

Query: 61  CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILK 103
           CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILK
Sbjct: 61  CTQDTSAKRLAKLYSSTFLLGIFCWVIDRGTARRYQIGSSILK 103

[Close]

BLAST of Csor.00g061520 vs. NCBI nr
Match: XP_008440061.1 (PREDICTED: alkaline ceramidase 3 [Cucumis melo] >XP_008440062.1 PREDICTED: alkaline ceramidase 3 [Cucumis melo])

HSP 1 Score: 139 bits (351), Expect = 1.88e-38
Identity = 75/126 (59.52%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG MFA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAMFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 94
           VAHSILRYDIGFKVHYV LCLLC+PRMYKYY+ T+D SAKRLA+LYS T LLG FCWV D
Sbjct: 129 VAHSILRYDIGFKVHYVILCLLCIPRMYKYYIYTEDASAKRLARLYSLTLLLGTFCWVSD 188

[Close]

BLAST of Csor.00g061520 vs. NCBI nr
Match: XP_038882449.1 (alkaline ceramidase [Benincasa hispida] >XP_038882450.1 alkaline ceramidase [Benincasa hispida])

HSP 1 Score: 139 bits (351), Expect = 1.88e-38
Identity = 75/126 (59.52%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG MFA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAMFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 94
           VAHSILRYDIGFKVHYV LCLLC+PRMYKYY+ T+D SAKRLA+LYS T LLGIFCWV+D
Sbjct: 129 VAHSILRYDIGFKVHYVILCLLCMPRMYKYYIYTKDASAKRLARLYSLTLLLGIFCWVMD 188

[Close]

BLAST of Csor.00g061520 vs. NCBI nr
Match: XP_023003815.1 (alkaline ceramidase [Cucurbita maxima] >XP_023003816.1 alkaline ceramidase [Cucurbita maxima] >XP_023003817.1 alkaline ceramidase [Cucurbita maxima] >XP_023003819.1 alkaline ceramidase [Cucurbita maxima] >XP_023003820.1 alkaline ceramidase [Cucurbita maxima])

HSP 1 Score: 139 bits (349), Expect = 3.76e-38
Identity = 78/144 (54.17%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG +FA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAIFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 112
           VAHSILRYDIGFK+HYV LCLLC+PRMYKYY+ T+D SAKRLA+LY  T LLGIFCWVID
Sbjct: 129 VAHSILRYDIGFKLHYVILCLLCIPRMYKYYIYTEDASAKRLARLYLLTLLLGIFCWVID 188

[Close]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL
Match: A0A1S3B0Z4 (alkaline ceramidase 3 OS=Cucumis melo OX=3656 GN=LOC103484652 PE=3 SV=1)

HSP 1 Score: 139 bits (351), Expect = 9.10e-39
Identity = 75/126 (59.52%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG MFA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAMFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 94
           VAHSILRYDIGFKVHYV LCLLC+PRMYKYY+ T+D SAKRLA+LYS T LLG FCWV D
Sbjct: 129 VAHSILRYDIGFKVHYVILCLLCIPRMYKYYIYTEDASAKRLARLYSLTLLLGTFCWVSD 188

[Close]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL
Match: A0A6J1KSV2 (alkaline ceramidase OS=Cucurbita maxima OX=3661 GN=LOC111497288 PE=3 SV=1)

HSP 1 Score: 139 bits (349), Expect = 1.82e-38
Identity = 78/144 (54.17%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG +FA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAIFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 112
           VAHSILRYDIGFK+HYV LCLLC+PRMYKYY+ T+D SAKRLA+LY  T LLGIFCWVID
Sbjct: 129 VAHSILRYDIGFKLHYVILCLLCIPRMYKYYIYTEDASAKRLARLYLLTLLLGIFCWVID 188

[Close]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL
Match: A0A6J1EME1 (alkaline ceramidase OS=Cucurbita moschata OX=3662 GN=LOC111433883 PE=3 SV=1)

HSP 1 Score: 136 bits (342), Expect = 2.05e-37
Identity = 77/144 (53.47%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQKV                                +FLF YG +FA
Sbjct: 69  MILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAIFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 112
           VAHSILRYDIGFK+HYV LCLLC+PRMYKYY+ T+D SAKRLA+LY  T LLGIFCWVID
Sbjct: 129 VAHSILRYDIGFKLHYVILCLLCIPRMYKYYIYTEDASAKRLARLYLLTLLLGIFCWVID 188

[Close]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL
Match: A0A6J1BUA9 (alkaline ceramidase OS=Momordica charantia OX=3673 GN=LOC111005428 PE=3 SV=1)

HSP 1 Score: 132 bits (332), Expect = 6.54e-36
Identity = 75/144 (52.08%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSMF+HATLQK+                                +FLF YG +FA
Sbjct: 69  MILAIGSMFYHATLQKLQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAIFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 112
           VAHSILRY IGFKVHYV LCLLC+PRMYKYY+ T+D SAKRLA+LY  T  LGI CWVID
Sbjct: 129 VAHSILRYGIGFKVHYVILCLLCIPRMYKYYIYTEDASAKRLARLYLLTLFLGILCWVID 188

[Close]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL
Match: A0A7J0FYQ4 (Alkaline phytoceramidase OS=Actinidia rufa OX=165716 GN=Acr_15g0019080 PE=3 SV=1)

HSP 1 Score: 129 bits (324), Expect = 3.33e-35
Identity = 72/142 (50.70%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSM FHATLQ+V                                +FLF YG +FA
Sbjct: 69  MILAIGSMLFHATLQQVQQQSDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGALFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFC-WVI 109
           VAHS +R+ IGFKVHY  LC LC+PRMYKYY+ TQD SAKR+AKLY++T  LG  C   +
Sbjct: 129 VAHSQIRFSIGFKVHYAILCFLCIPRMYKYYIHTQDVSAKRIAKLYAATLFLGSVCVGCL 188

[Close]

BLAST of Csor.00g061520 vs. TAIR 10
Match: AT4G22330.1 (Alkaline phytoceramidase (aPHC) )

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-25
Identity = 60/121 (49.59%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 1   MILAIGSMFFHATLQKV--------------------------------SFLFPYGVMFA 60
           MILAIGSM +HATLQ V                                +FLF YG  FA
Sbjct: 69  MILAIGSMLYHATLQHVQQQSDETPMVWEILLYMYILYSPDWHYRSTMPTFLFLYGAAFA 128

Query: 61  VAHSILRYDIGFKVHYVNLCLLCVPRMYKYYMCTQDTSAKRLAKLYSSTFLLGIFCWVID 90
           + H+ LR+ IGFKVHYV LCLLC+PRMYKYY+ T+DT+AKR+AK Y +T L+G  CW  D
Sbjct: 129 IVHAYLRFGIGFKVHYVILCLLCIPRMYKYYIHTEDTAAKRIAKWYVATILVGSICWFCD 188

The following BLAST results are available for this feature:

BLAST of Csor.00g061520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94IB9	4.2e-24	49.59	Alkaline ceramidase OS=Arabidopsis thaliana OX=3702 GN=ACER PE=2 SV=1	[more]

BLAST of Csor.00g061520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603812.1	3.43e-78	100.00	Alkaline ceramidase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033992.1	1.94e-67	99.03	Alkaline ceramidase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008440061.1	1.88e-38	59.52	PREDICTED: alkaline ceramidase 3 [Cucumis melo] >XP_008440062.1 PREDICTED: alkal...	[more]
XP_038882449.1	1.88e-38	59.52	alkaline ceramidase [Benincasa hispida] >XP_038882450.1 alkaline ceramidase [Ben...	[more]
XP_023003815.1	3.76e-38	54.17	alkaline ceramidase [Cucurbita maxima] >XP_023003816.1 alkaline ceramidase [Cucu...	[more]

BLAST of Csor.00g061520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0Z4	9.10e-39	59.52	alkaline ceramidase 3 OS=Cucumis melo OX=3656 GN=LOC103484652 PE=3 SV=1	[more]
A0A6J1KSV2	1.82e-38	54.17	alkaline ceramidase OS=Cucurbita maxima OX=3661 GN=LOC111497288 PE=3 SV=1	[more]
A0A6J1EME1	2.05e-37	53.47	alkaline ceramidase OS=Cucurbita moschata OX=3662 GN=LOC111433883 PE=3 SV=1	[more]
A0A6J1BUA9	6.54e-36	52.08	alkaline ceramidase OS=Momordica charantia OX=3673 GN=LOC111005428 PE=3 SV=1	[more]
A0A7J0FYQ4	3.33e-35	50.70	Alkaline phytoceramidase OS=Actinidia rufa OX=165716 GN=Acr_15g0019080 PE=3 SV=1	[more]

BLAST of Csor.00g061520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22330.1	3.0e-25	49.59	Alkaline phytoceramidase (aPHC)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044219	Alkaline ceramidase, plant	PANTHER	PTHR46852	ALKALINE CERAMIDASE	coord: 18..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g061520.m01	Csor.00g061520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006672	ceramide metabolic process
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides