Csor.00g061040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g061040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosomal protein L11
Location	Csor_Chr03: 5897824 .. 5898291 (+)
RNA-Seq Expression	Csor.00g061040
Synteny	Csor.00g061040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCTGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCTGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATCTTAACAAGACGACCCGTCGCCGCCACCATCAGGCTCACCGTACCTGCCGGCGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGTTGGGTCAGTACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCTGGACTCAAAAGTACAAGCCTGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGATAATACCTTTGAGTTCACCGTAAAGTCGCCGTCGGTCACATGGTACCTGAAGAAAGCCGCCGGGATCGAGTCTGGGAGCAGCCGCCCTGGCCATGTGGTCGCCTCTACGCTCACTGTCAAGCACATTTACGATATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGATTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD

Homology

[Close]

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.0e-33
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNA T  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   L++KHIY+IAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot
Match: Q2RQU9 (50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rplK PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-30
Identity = 66/142 (46.48%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQ  +P  P+ V ITA+
Sbjct: 3   KKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAATQGLEPGMPIPVVITAY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D TF +  K+P +T++LKKAAGI  GS+ PG   A T+T++ + DIA+ K  D      
Sbjct: 63  GDRTFTYITKTPPMTYFLKKAAGIGKGSTTPGKGSAGTVTMEQVRDIAEKKMPD--LNSP 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            +E+  + ++G+A SMG++VV+
Sbjct: 123 TIEAAVQMVVGSARSMGLQVVE 142

[Close]

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot
Match: A7HWQ0 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T+TV    +IA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot
Match: O67758 (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GSS P  V    +TVK + +IAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            L++  +++ GTA SMGI++
Sbjct: 123 DLKAAMRTVAGTAKSMGIEI 140

[Close]

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot
Match: Q9VFJ2 (39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=mRpL11 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29
Identity = 60/155 (38.71%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           + +LK+ + R    + ++  +PAG A   PP+GP LGQ  +N+ AFCKDFNA T + K  
Sbjct: 8   LKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEG 67

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
            P+   I+   D +++  +  P  T++LK+AAGI+ G+  PG  VA  +T+KH+Y+IA +
Sbjct: 68  VPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKHLYEIAAI 127

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           K  DP    + ++ +C+ +I  A + GIKVV+E+D
Sbjct: 128 KIQDPPNVLLTMQQMCEMLISIARTCGIKVVREID 162

[Close]

BLAST of Csor.00g061040 vs. NCBI nr
Match: KAG6603860.1 (hypothetical protein SDJN03_04469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (802), Expect = 1.23e-107
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308 bits (788), Expect = 1.68e-105
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. NCBI nr
Match: XP_022977323.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 305 bits (781), Expect = 1.96e-104
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. NCBI nr
Match: XP_022950615.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (780), Expect = 2.78e-104
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLTVKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 303 bits (776), Expect = 1.13e-103
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 155

[Close]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 305 bits (781), Expect = 9.48e-105
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLT+KHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL
Match: A0A6J1GG89 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111453660 PE=3 SV=1)

HSP 1 Score: 305 bits (780), Expect = 1.35e-104
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTLTVKHIYDIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDP+CQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPFCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 3.18e-103
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 2.61e-102
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL
Match: A0A1S3BMZ5 (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 2.61e-102
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]

BLAST of Csor.00g061040 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 270.4 bits (690), Expect = 9.0e-73
Identity = 128/154 (83.12%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA TQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TL+V+H+Y+IAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK+V++L+
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]

BLAST of Csor.00g061040 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-22
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNAWTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NA T   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +T+  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]

BLAST of Csor.00g061040 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +T+  +  IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

The following BLAST results are available for this feature:

BLAST of Csor.00g061040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UTK2	4.0e-33	50.37	54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q2RQU9	5.4e-30	46.48	50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]
A7HWQ0	1.6e-29	47.18	50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130...	[more]
O67758	2.0e-29	47.14	50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=...	[more]
Q9VFJ2	2.7e-29	38.71	39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster OX=7227 GN=m...	[more]

BLAST of Csor.00g061040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603860.1	1.23e-107	100.00	hypothetical protein SDJN03_04469, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034038.1	1.68e-105	99.35	mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022977323.1	1.96e-104	98.06	54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]	[more]
XP_022950615.1	2.78e-104	98.06	54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata] >XP_023544347...	[more]
XP_038901904.1	1.13e-103	97.42	54S ribosomal protein L19, mitochondrial [Benincasa hispida]	[more]

BLAST of Csor.00g061040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPM9	9.48e-105	98.06	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GG89	1.35e-104	98.06	54S ribosomal protein L19, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1BU21	3.18e-103	96.13	54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7T9U7	2.61e-102	95.48	54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BMZ5	2.61e-102	95.48	54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602...	[more]

BLAST of Csor.00g061040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35490.1	9.0e-73	83.12	mitochondrial ribosomal protein L11	[more]
AT1G32990.1	2.5e-22	42.86	plastid ribosomal protein l11	[more]
AT5G51610.1	1.7e-07	34.18	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 17..151 e-value: 6.4E-69 score: 245.0
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..154
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 13..152 score: 24.353161
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 17..150 e-value: 4.34652E-63 score: 188.043
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..75 e-value: 2.6E-23 score: 81.6
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 80..150 e-value: 8.3E-28 score: 96.7
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 78..151 e-value: 1.1E-28 score: 101.2
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..151
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 13..152 e-value: 1.3E-54 score: 181.9
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 11..77 e-value: 9.5E-26 score: 91.3
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 13..80
None	No IPR available	PANTHER	PTHR11661:SF22	SUBFAMILY NOT NAMED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g061040.m01	Csor.00g061040.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome