Csor.00g058530 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g058530
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Growth-regulating factor
Location	Csor_Chr03: 7067195 .. 7067711 (+)
RNA-Seq Expression	Csor.00g058530
Synteny	Csor.00g058530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGCAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCTCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGTAAGTTGTTTGGTTTTTCTTGCAAGAGCATTCATTCTTGTGAAATTAGATCAAAATAATGTCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAATCCATCTTCTAAATTAAATGTTTTAGTAGTCGTGTAGGCCCAGAGCCAAAGTTGGGCTGTTCATTTCTCCGTGTGCTTAATGGGCCATCTTTGTAA

mRNA sequence

ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGCAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCTCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGCCCAGAGCCAAAGTTGGGCTGTTCATTTCTCCGTGTGCTTAATGGGCCATCTTTGTAA

Coding sequence (CDS)

ATGAATCACAGAAAAGTCCTTTCCCAACGAAATCTTCCCTTCTCATGGGAGCAAAACCCCGCCCGTTCCAAATTCTACTTCCGGGATTTTCAAGCCCTTGCCTTACAGCCCTCGCCGTCGTCCACCTACCACAGAGGAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCAGCAGCCCCGTTCAATTAGAAACGCCTCCGCCAAGGAAGACGACCCTTTTCTCATGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCCGCCGCCGTTTCGAAGAAGAGCCCAGAGCCAAAGTTGGGCTGTTCATTTCTCCGTGTGCTTAATGGGCCATCTTTGTAA

Protein sequence

MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSPEPKLGCSFLRVLNGPSL

Homology

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BLAST of Csor.00g058530 vs. NCBI nr
Match: KAG6604109.1 (hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264 bits (674), Expect = 5.39e-89
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP 60
           MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP
Sbjct: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPPP 60

Query: 61  YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSPEPKLGCSFL 120
           YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSPEPKLGCSFL
Sbjct: 61  YRQQPRSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKSPEPKLGCSFL 120

Query: 121 RVLNGPSL 128
           RVLNGPSL
Sbjct: 121 RVLNGPSL 128

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BLAST of Csor.00g058530 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 2.53e-23
Identity = 68/138 (49.28%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSK-FYFRDFQALALQPSPSSTYHRGDSEFDVVSKIPPP 60
           M+H+K+ S+ N+PFSWE+ P  SK   F+D     +QP P  + H  DSEFD V KIPPP
Sbjct: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD-----VQPLPLHSVHE-DSEFDDVGKIPPP 60

Query: 61  P-YRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVERGNK--GAAAVSKKSPE 120
           P  R QP S+RNAS K    E+DPFL AYKECTKSVK G  V + +K  G    S  S E
Sbjct: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCE 120

Query: 121 P------KLGCSFLRVLN 124
                  KLG   +RVL+
Sbjct: 121 IRDASVFKLGRDSIRVLS 132

[Close]

BLAST of Csor.00g058530 vs. NCBI nr
Match: KAA0036397.1 (hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK12793.1 hypothetical protein E5676_scaffold255G003820 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 3.27e-18
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 2  NHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQ--PSPSSTYHRGD-SEFD--VVSKI 61
          +HRKVLSQ N+    +  P  SKF  RDFQALAL      SSTY   D S+FD  V SKI
Sbjct: 4  HHRKVLSQGNIIPHHQNPPGLSKF--RDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63

Query: 62 PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKN 92
          PPPP R  P +  +A  + DDPFL+AYKECTKSVKN
Sbjct: 64 PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKN 97

[Close]

BLAST of Csor.00g058530 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_003745 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.44e-18
Identity = 63/115 (54.78%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 3   HRKVLSQRNLPFSWEQNPAR-SKFYFRDFQALALQPSPSSTYHRGD--SEFD--VVSKIP 62
           HRK+LSQ N+     QNP   SKF  RDFQALAL    SS Y   D  S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKF--RDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 110
           PPP R  P      SAKE  DDPFL+AYKECTKSVKN     +G      V KKS
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKS 112

[Close]

BLAST of Csor.00g058530 vs. NCBI nr
Match: OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])

HSP 1 Score: 76.6 bits (187), Expect = 1.11e-14
Identity = 50/119 (42.02%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRD-------FQALALQPSPSSTYHRGDSEFDVV 60
           MN  KV SQ N+PFSWE  P   K   +D        Q L   P P  T     S     
Sbjct: 1   MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60

Query: 61  SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKK 109
           +KIPPPP   QP    S R    K DDPFL AYKECTKS   G   +  N G +   KK
Sbjct: 61  NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKK 119

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BLAST of Csor.00g058530 vs. ExPASy TrEMBL
Match: A0A5D3CLL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003820 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.58e-18
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 2  NHRKVLSQRNLPFSWEQNPARSKFYFRDFQALALQ--PSPSSTYHRGD-SEFD--VVSKI 61
          +HRKVLSQ N+    +  P  SKF  RDFQALAL      SSTY   D S+FD  V SKI
Sbjct: 4  HHRKVLSQGNIIPHHQNPPGLSKF--RDFQALALHLHSHSSSTYKNPDASQFDHLVSSKI 63

Query: 62 PPPPYRQQPRSIRNASAKEDDPFLMAYKECTKSVKN 92
          PPPP R  P +  +A  + DDPFL+AYKECTKSVKN
Sbjct: 64 PPPPCRFPPYNAASAKEELDDPFLVAYKECTKSVKN 97

[Close]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL
Match: A0A0A0KGJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.66e-18
Identity = 63/115 (54.78%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 3   HRKVLSQRNLPFSWEQNPAR-SKFYFRDFQALALQPSPSSTYHRGD--SEFD--VVSKIP 62
           HRK+LSQ N+     QNP   SKF  RDFQALAL    SS Y   D  S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKF--RDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRQQPRSIRNASAKE--DDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKKS 110
           PPP R  P      SAKE  DDPFL+AYKECTKSVKN     +G      V KKS
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKS 112

[Close]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL
Match: A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.35e-15
Identity = 50/119 (42.02%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRD-------FQALALQPSPSSTYHRGDSEFDVV 60
           MN  KV SQ N+PFSWE  P   K   +D        Q L   P P  T     S     
Sbjct: 1   MNQTKVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQD 60

Query: 61  SKIPPPPYRQQP---RSIRNASAKEDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSKK 109
           +KIPPPP   QP    S R    K DDPFL AYKECTKS   G   +  N G +   KK
Sbjct: 61  NKIPPPPGAFQPPSRSSSRRGLKKSDDPFLAAYKECTKSTNKGKLAKNVNGGGSGNLKK 119

[Close]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL
Match: W9RVC8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.38e-14
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRDF------QALALQPSPSSTYHRGDSEFDVVS 60
           M HRKV SQ ++PF WE  P  SK   +D       QAL L  S SS   +   +F ++S
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQ-QFSLLS 60

Query: 61  -------------KIPPPPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVE 108
                        KIPPPP   QP S R++SAK    ++DPFL+AYKECTK VK G   E
Sbjct: 61  DGSKLVSATNDLLKIPPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE 120

[Close]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL
Match: A0A7J6I4Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.05e-13
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 1   MNHRKVLSQRNLPFSWEQNPARSKFYFRD--FQALALQPSPSSTYHRGDSEFDVVS---K 60
           M+HRKV SQ ++PFSWE  P  SK   ++   QAL L  SPS +    ++  D+V     
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVAQQNPRVQALDLTSSPSPSPSISNTNNDLVKLKIP 60

Query: 61  IPPPPYRQQPRSIRNASAK----EDDPFLMAYKECTKSVKNGSFVERGNKGAAAVSK 108
           +PP P   QP S R+ SAK    ++DPFL+AYKECTK  K G+     NK A+ V K
Sbjct: 61  LPPCPTPSQPPS-RSNSAKGLKWQEDPFLLAYKECTKPQKKGN-----NKKASKVRK 111

The following BLAST results are available for this feature:

BLAST of Csor.00g058530 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g058530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604109.1	5.39e-89	100.00	hypothetical protein SDJN03_04718, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594957.1	2.53e-23	49.28	hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0036397.1	3.27e-18	57.29	hypothetical protein E6C27_scaffold18G001980 [Cucumis melo var. makuwa] >TYK1279...	[more]
KGN48633.1	3.44e-18	54.78	hypothetical protein Csa_003745 [Cucumis sativus]	[more]
OMO70852.1	1.11e-14	42.02	hypothetical protein COLO4_28461 [Corchorus olitorius]	[more]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLL9	1.58e-18	57.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGJ1	1.66e-18	54.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1	[more]
A0A1R3HKK6	5.35e-15	42.02	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1	[more]
W9RVC8	8.38e-14	41.22	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]
A0A7J6I4Y5	1.05e-13	44.44	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_017327 PE=4 SV=1	[more]

BLAST of Csor.00g058530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..74
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 1..98
None	No IPR available	PANTHER	PTHR33696:SF3	SUBFAMILY NOT NAMED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g058530.m01	Csor.00g058530.m01	mRNA