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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTACTCACAATGGGATCAGAAGGAACGTAATATTGGACTACCAACTCAAACCTCTATCTGCTCGAAACGTGTAAGAACTGCAAAACCCAACTGGGTCCCCCTTCCTCTATTATATATTTATATTTATATTTATATATTTTCTAATCATTTGAGTATATATATTAAACCACCCGATTTTTAAAATTATTTGATTAATGGGCCTGGGAAATGAATGCGGGCCGGGGGCATTTAAAATTGGGCTTTATCAGTCGAGATTTCCATGTACAGCCCAGTTATGAAAATCTTTTACTCGTAATTACTGTAATTAATTATAAAATAAATGGTAGTTTAGATAGGGAGGCAGGGTTTGAAATTCGAATATTAAATCCACTTGGGTATTATCGATTTGGATTTATGGCTATTAAAAAGTTAAATCAATAATTTAAACATGACTCAGTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCTAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGATCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTAGATTTTTTTTTTTAATCCCTTTTTAATGCAATTCTTTTGCTTTCTAACTCGATCGTCCGCGATTTTTCTCGACTCCCCTTCTTCTTCTTCTCCTAATTGCAGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTAG mRNA sequence ATGGGTACTCACAATGGGATCAGAAGGAACGTAATATTGGACTACCAACTCAAACCTCTATCTGCTCGAAACGTTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCTAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGATCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTAG Coding sequence (CDS) ATGGGTACTCACAATGGGATCAGAAGGAACGTAATATTGGACTACCAACTCAAACCTCTATCTGCTCGAAACGTTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCTAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGATCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTAG Protein sequence MGTHNGIRRNVILDYQLKPLSARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLSLSLLVGISNIGISSSFSGFSPLILIVFPCCC
Homology
BLAST of Csor.00g058420 vs. NCBI nr
Match: KAG6604120.1 (hypothetical protein SDJN03_04729, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177 bits (450), Expect = 5.29e-56 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MGTHNGIRRNVILDYQLKPLSARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLS 60
MGTHNGIRRNVILDYQLKPLSARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLS
Sbjct: 1 MGTHNGIRRNVILDYQLKPLSARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLS 60
Query: 61 LSLLVGISNIGISSSFSGFSPLILIVFPCCC 91
LSLLVGISNIGISSSFSGFSPLILIVFPCCC
Sbjct: 61 LSLLVGISNIGISSSFSGFSPLILIVFPCCC 91
BLAST of Csor.00g058420 vs. NCBI nr
Match: KAG6594968.1 (hypothetical protein SDJN03_11521, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 58.2 bits (139), Expect = 1.80e-08 Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query: 1 MGTHNGIRRNVILDYQLKPLSARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLS 60
MGT+NGIRRNVIL+Y+LK LSA+NV LR H+++ S +L
Sbjct: 8 MGTYNGIRRNVILEYELKALSAQNV-------LR----------------HINSFSLNLK 67
Query: 61 LSLLVGISNIGISSSFSGFSPLILI---------VFPCCC 91
LSLLVG+SNI + SP +++ FPCCC
Sbjct: 68 LSLLVGVSNITSENHLRDPSPFVILWILSGSFHLFFPCCC 84
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| KAG6604120.1 | 5.29e-56 | 100.00 | hypothetical protein SDJN03_04729, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6594968.1 | 1.80e-08 | 41.00 | hypothetical protein SDJN03_11521, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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