Csor.00g057190 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g057190
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RRM domain-containing protein
Location	Csor_Chr04: 8314971 .. 8315887 (-)
RNA-Seq Expression	Csor.00g057190
Synteny	Csor.00g057190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTACCCTTTTATTTTTCTGCCCTTCTGAAGTAGAAAAGGCTCTCGGAGAAAATATAGAGTAAATTGGAAGCTCTCTTCTGATCATTCTTGTTGGGTGGAGATTTATGTAGCAGATTTTGTTTATCTTTTACTGTTTGCTGCATTTCTCGCATTCCTATATTAAAAATTTGAACTATTCCTTCATCTACTTTCGCAAATTTCTCAACGCCCATCTGAATTTAGGTCTTGATTTTGCGTGCAAAACTATAAATTGGCTAGGGCTTGAGACTCAATTGGATTTGCTGCTCTACTAGTTTTCATTGTGAATGGTGAAATTGAGGACATTTCCACAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

mRNA sequence

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Coding sequence (CDS)

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Protein sequence

MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

Homology

[Close]

BLAST of Csor.00g057190 vs. ExPASy Swiss-Prot
Match: P0CJ66 (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.9e-50
Identity = 107/206 (51.94%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]

BLAST of Csor.00g057190 vs. NCBI nr
Match: KAG6601405.1 (hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032185.1 hypothetical protein SDJN02_06228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387 bits (994), Expect = 1.25e-135
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383 bits (983), Expect = 5.95e-134
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. NCBI nr
Match: XP_022957251.1 (uncharacterized protein At1g27050 [Cucurbita moschata])

HSP 1 Score: 381 bits (978), Expect = 3.44e-133
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. NCBI nr
Match: XP_023000221.1 (uncharacterized protein At1g27050 [Cucurbita maxima])

HSP 1 Score: 380 bits (976), Expect = 6.94e-133
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. NCBI nr
Match: XP_038892024.1 (uncharacterized protein At1g27050 [Benincasa hispida])

HSP 1 Score: 344 bits (882), Expect = 1.49e-118
Identity = 175/194 (90.21%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S AKRRR  PP   P ED+D+DKPL KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSVAKRRRPPPPAPSPTEDEDMDKPLSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL
Match: A0A6J1GYQ1 (uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 PE=4 SV=1)

HSP 1 Score: 381 bits (978), Expect = 1.67e-133
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL
Match: A0A6J1KFA1 (uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE=4 SV=1)

HSP 1 Score: 380 bits (976), Expect = 3.36e-133
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL
Match: A0A6J1DBZ8 (uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 1.05e-111
Identity = 165/194 (85.05%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H   S +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRGREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL
Match: A0A5A7STE1 (Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003870 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 2.61e-111
Identity = 169/194 (87.11%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S AKRRR  PP ++   DDD++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL
Match: A0A1S3BE88 (uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 2.61e-111
Identity = 169/194 (87.11%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S AKRRR  PP ++   DDD++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 194
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Csor.00g057190 vs. TAIR 10
Match: AT1G27050.1 (homeobox protein 54 )

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-51
Identity = 107/206 (51.94%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

The following BLAST results are available for this feature:

BLAST of Csor.00g057190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CJ66	5.9e-50	51.94	Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P...	[more]

BLAST of Csor.00g057190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601405.1	1.25e-135	100.00	hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023537967.1	5.95e-134	98.45	uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]	[more]
XP_022957251.1	3.44e-133	97.94	uncharacterized protein At1g27050 [Cucurbita moschata]	[more]
XP_023000221.1	6.94e-133	98.45	uncharacterized protein At1g27050 [Cucurbita maxima]	[more]
XP_038892024.1	1.49e-118	90.21	uncharacterized protein At1g27050 [Benincasa hispida]	[more]

BLAST of Csor.00g057190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYQ1	1.67e-133	97.94	uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 ...	[more]
A0A6J1KFA1	3.36e-133	98.45	uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE...	[more]
A0A6J1DBZ8	1.05e-111	85.05	uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113...	[more]
A0A5A7STE1	2.61e-111	87.11	Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BE88	2.61e-111	87.11	uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 S...	[more]

BLAST of Csor.00g057190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27050.1	4.2e-51	51.94	homeobox protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..119 e-value: 1.0E-4 score: 31.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..101 e-value: 4.3E-6 score: 26.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 48..123 score: 10.42841
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..129 e-value: 9.5E-10 score: 40.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..181
None	No IPR available	CDD	cd00590	RRM_SF	coord: 52..94 e-value: 2.20237E-4 score: 36.5141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g057190.m01	Csor.00g057190.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding