Csor.00g052470 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g052470
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 2628147 .. 2628706 (+)
RNA-Seq Expression	Csor.00g052470
Synteny	Csor.00g052470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCGCTCTTCGAAACTCAAAACCAAATTCTTCTCTCTCTTTCCAATTCGGGCGGCATTTTCCTCTCTCTCGCTCTCTCTCTCTCAGGTTCTTTCGGCCTTCTTCATCTTTTTCTCGGTTAAATTTCTAGCTCGGAATCGAACCTGATGTTAGTTCTTTTTTGTTAATCTTCTTCGTATATCCTTTACGCATTCCAATCCTCTGTTCTTCTTTTTTCTTTTCCGAATAAGAATCTTTCCGTTTGTTTTGATTCATCTGCTGCTTTTTTATCTCGGAAATTGTAGGAGGAAGTTTGGTATTTTGAATTTCGTGCTCCATTTTTGCTCGTTTTGTTACTGAGATTACGAAGCTAACGATTGTTGCAGGTGATTTTGATTATTTGGAATGGCTTCTTCTACTCTTATCTCTGAATCCGAGGCGTGGAAGAACCTCAAGGTACTTGGTTGGTGGGTCTCAAGTTGATTTTAAGCTTGATATGTGCTATCATAATGCTGAACCTTTTGTTGGCTGTAGGCTCATGTTGGGGACATTGACAAGACCCATTTGCGTGATTTGA

mRNA sequence

ATGGTTTCGCTCTTCGAAACTCAAAACCAAATTCTTCTCTCTCTTTCCAATTCGGGCGGCATTTTCCTCTCTCTCGCTCTCTCTCTCTCAGGTGATTTTGATTATTTGGAATGGCTTCTTCTACTCTTATCTCTGAATCCGAGGCGTGGAAGAACCTCAAGGCTCATGTTGGGGACATTGACAAGACCCATTTGCGTGATTTGA

Coding sequence (CDS)

ATGGTTTCGCTCTTCGAAACTCAAAACCAAATTCTTCTCTCTCTTTCCAATTCGGGCGGCATTTTCCTCTCTCTCGCTCTCTCTCTCTCAGGTGATTTTGATTATTTGGAATGGCTTCTTCTACTCTTATCTCTGAATCCGAGGCGTGGAAGAACCTCAAGGCTCATGTTGGGGACATTGACAAGACCCATTTGCGTGATTTGA

Protein sequence

MVSLFETQNQILLSLSNSGGIFLSLALSLSGDFDYLEWLLLLLSLNPRRGRTSRLMLGTLTRPICVI

Homology

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BLAST of Csor.00g052470 vs. NCBI nr
Match: KAG6585606.1 (hypothetical protein SDJN03_18339, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 1.91e-36
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MVSLFETQNQILLSLSNSGGIFLSLALSLSGDFDYLEWLLLLLSLNPRRGRTSRLMLGTL 60
          MVSLFETQNQILLSLSNSGGIFLSLALSLSGDFDYLEWLLLLLSLNPRRGRTSRLMLGTL
Sbjct: 1  MVSLFETQNQILLSLSNSGGIFLSLALSLSGDFDYLEWLLLLLSLNPRRGRTSRLMLGTL 60

Query: 61 TRPICVI 67
          TRPICVI
Sbjct: 61 TRPICVI 67

The following BLAST results are available for this feature:

BLAST of Csor.00g052470 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g052470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585606.1	1.91e-36	100.00	hypothetical protein SDJN03_18339, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g052470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g052470 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g052470.m01	Csor.00g052470.m01	mRNA