Csor.00g052290 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g052290
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRING finger protein 5-like
LocationCsor_Chr12: 2723441 .. 2724568 (+)
RNA-Seq ExpressionCsor.00g052290
SyntenyCsor.00g052290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGGGAAAGACGTCGACTGACCCGAGGTCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGGTTTGGTAATTTCACATTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTGTTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTACTACCTGAAGCGGCTGCTTTTTTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAGATCAAAGGGTCCATTAGGGCATATATTATTGCTTTGTGGTGTTTAGTGTATTCAATCTCTAATGTAAGAATTATAGAAGTGAAAAAAATCCGATGGTACATTGTCTTGCTGTCTCATCATTATTGAAATGAACATCTACTTTTGTATACTTAGCACGATGAACGTTAGCTGACGTGCTTATGCAATTGTATTCGAAGGTTTCAATTTATTCACATCTATATATACTACATTTACATGCTGACCCACCAAATGCAATCACTTGGCTGAGTGAATGAAACACGTGCTGTGATGGCTCGTTCTCTCGAAAGATGATTTATTTGCCTAAGTGATTTCTCTAGTGCTCTTACTTTATGCACTACTTGTGATATGTGTTTCCTGTTTTTTGGTGAAGAAGTTCAGAATATACAGATGGGTTTCTGCTGCACATGGTACTACCAGAAACTTGTTCATCAGATTTTGTTTAGCTATGGTTCTATCCATGTTCATTATTTCAATTCTATCTCAGTATTTGTTTCGTTTTCTCAAGTCTTCGATTCCAGTTTGGTTTATTTTTGAACTTCAGTCTTGCACTAGGTTCGTGAAATACGTCGTTCTGATCGAAGAGCAGGACAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAGTAGGTCAGTGA

mRNA sequence

ATGGTAGGGGAAAGACGTCGACTGACCCGAGGTCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGTTTGGTTTATTTTTGAACTTCAGTCTTGCACTAGGTTCGTGAAATACGTCGTTCTGATCGAAGAGCAGGACAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAGTAGGTCAGTGA

Coding sequence (CDS)

ATGGTAGGGGAAAGACGTCGACTGACCCGAGGTCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGTTTGGTTTATTTTTGAACTTCAGTCTTGCACTAGGTTCGTGAAATACGTCGTTCTGATCGAAGAGCAGGACAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAGTAGGTCAGTGA

Protein sequence

MVGERRRLTRGRKVFRELIFLIVLRDRDLKQQALPQSQILLLTMDLDSWEVLEGLLQWHQQDPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVLIEEQDKDQDHHPLIPCWELVGQ
Homology
[Close]
BLAST of Csor.00g052290 vs. NCBI nr
Match: KAG6585624.1 (hypothetical protein SDJN03_18357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298 bits (763), Expect = 4.40e-102
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MVGERRRLTRGRKVFRELIFLIVLRDRDLKQQALPQSQILLLTMDLDSWEVLEGLLQWHQ 60
           MVGERRRLTRGRKVFRELIFLIVLRDRDLKQQALPQSQILLLTMDLDSWEVLEGLLQWHQ
Sbjct: 1   MVGERRRLTRGRKVFRELIFLIVLRDRDLKQQALPQSQILLLTMDLDSWEVLEGLLQWHQ 60

Query: 61  QDPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVV 120
           QDPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVV
Sbjct: 61  QDPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVV 120

Query: 121 LIEEQDKDQDHHPLIPCWELVGQ 143
           LIEEQDKDQDHHPLIPCWELVGQ
Sbjct: 121 LIEEQDKDQDHHPLIPCWELVGQ 143

[Close]
BLAST of Csor.00g052290 vs. NCBI nr
Match: KAG7020533.1 (putative galacturonosyltransferase-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (340), Expect = 9.70e-34
Identity = 74/116 (63.79%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQ----------VWFI----F 121
           DPSMYGAGANFPYGFPNMFHGSHGHGH  AHAHGYYHHLRQ          ++FI    F
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGH--AHAHGYYHHLRQGQQDYYLKRLLFFIGFCKF 230

Query: 122 EL---------------------QSCTRFVKYVVLIEEQDKDQDHHPLIPCWELVG 142
            +                      SCTRFVKYVVLIEEQDKDQDHHPLIPCWELVG
Sbjct: 231 RIYRWVSAAHGTTRNLFIRFCLAMSCTRFVKYVVLIEEQDKDQDHHPLIPCWELVG 284

[Close]
BLAST of Csor.00g052290 vs. NCBI nr
Match: XP_023002012.1 (RING finger protein 5-like [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 5.60e-21
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 230

[Close]
BLAST of Csor.00g052290 vs. NCBI nr
Match: ATS91247.1 (RING finger protein 5-like [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 1.86e-17
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGH  AHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGH--AHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 229

[Close]
BLAST of Csor.00g052290 vs. NCBI nr
Match: XP_022951148.1 (RING finger protein 5 [Cucurbita moschata] >XP_023537562.1 RING finger protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 1.86e-17
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGH  AHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGH--AHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 229

[Close]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match: A0A6J1KI92 (RING finger protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111496023 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.71e-21
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 230

[Close]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match: A0A6J1GGW7 (RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.03e-18
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGH  AHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGH--AHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 229

[Close]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match: A0A2D2VZT2 (RING finger protein 5-like OS=Cucurbita moschata OX=3662 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.03e-18
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGANFPYGFPNMFHGSHGHGH  AHAHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANFPYGFPNMFHGSHGHGH--AHAHGYYHHLRQGQQDYYLKRLLFFIGFCVL 229

[Close]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match: A0A6J1KA44 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111492032 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.98e-13
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGAN PYGFPNMFHGSHGH      AHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANVPYGFPNMFHGSHGH------AHGYYHHLRQGQQDYYLKRLLLFIGFCVL 225

[Close]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match: A0A6J1HCN0 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC111462860 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.98e-13
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 62  DPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQVWFIFELQSCTRFVKYVVL 121
           DPSMYGAGAN PYGFPNMFHGSHGH      AHGYYHHLRQ    + L+    F+ + VL
Sbjct: 171 DPSMYGAGANVPYGFPNMFHGSHGH------AHGYYHHLRQGQQDYYLKRLLLFIGFCVL 225

The following BLAST results are available for this feature:
BLAST of Csor.00g052290 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g052290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585624.14.40e-102100.00hypothetical protein SDJN03_18357, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020533.19.70e-3463.79putative galacturonosyltransferase-like 2, partial [Cucurbita argyrosperma subsp... [more]
XP_023002012.15.60e-2173.77RING finger protein 5-like [Cucurbita maxima][more]
ATS91247.11.86e-1770.49RING finger protein 5-like [Cucurbita moschata][more]
XP_022951148.11.86e-1770.49RING finger protein 5 [Cucurbita moschata] >XP_023537562.1 RING finger protein 5... [more]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KI922.71e-2173.77RING finger protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111496023 PE=4 SV=1[more]
A0A6J1GGW79.03e-1870.49RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1[more]
A0A2D2VZT29.03e-1870.49RING finger protein 5-like OS=Cucurbita moschata OX=3662 PE=2 SV=1[more]
A0A6J1KA443.98e-1362.30E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111492... [more]
A0A6J1HCN03.98e-1362.30E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
BLAST of Csor.00g052290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g052290.m01Csor.00g052290.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071712 ER-associated misfolded protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0044390 ubiquitin-like protein conjugating enzyme binding
molecular_function GO:0061630 ubiquitin protein ligase activity