Csor.00g046410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g046410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic
Location	Csor_Chr18: 192207 .. 194296 (+)
RNA-Seq Expression	Csor.00g046410
Synteny	Csor.00g046410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGTATTCACACTTCTACCAATTTGCTCCTCTTAAGTTGCCTATCTCGTTAATCCAAATCTAGATGAAATGTTTTTTTAGAAATTTTTGTTCGTTGTTCAATATTTACCTCATTTCTGGCTTTGTGGACACAGAATCCGCTTATCATGCGCATGTAAGAATGATAATTTTCCAGTTCGTTTGAATTTTATTTTTTCGAAGAGGAAAACTAAGCGTTTGATTATGGGGGAAAACTACAAATTGAAGCAAATCGTGCAGAGAAAATCTGAATCTTCTTGTTTGCATGTCTGTGTGCATCTATGGTGCAGTAATATAATGCTACTCTTGATTGTTCAGTAAAATCTTGTATATGTGACAACAGCATTCACACAACTCTTATGTCATGGTGAATTAAAATTTCTAAATATAGGGATCAACATGAGATTAGCGAGAAAGCTCAATGACTAAGTAGAAGTTTTAGAAGTTGAATGATCAAAATGAATAGGAAATGTTATTGTTTAGCTACCAAAATAATAGTTTGATCTTCTAGTTCTCTTTCTTTTACTTCAATCTATATTATTGCTGAAAGTCCATAGACAAAGTATATGAATTCCAGAATTCCAGAAATTTTAGAACTTGAACTTGCATGAGATGTTTATTGAGTATTAGACATTTATAATTGGTATTTGTGTGATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGTATAAAACAATTCTCCTCCTCTGAATGTCTGTCGCGTATGAGCAAGTAAAGATCTGTATGCATTTGGGAACTCGAGAGCTGAGCTTCCAATACAATTTTGATGTTCAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGGTTGTTGAATAGGGAGAAGAGATTATGTAATGTACTCTCTTCTGCCCATATTAAAATATATTGAATGTCATCAACTGCTACAAAATTATGTACATAAATAGAGATACTTCATAAAGAAATAAACTTCAATTTACAAATGCATGCTCATTCACTCCGGTTTCACTATTCTGTTAGTAGTACGCAGTTTTTAAGTGAATATGTGCTGTTTTCCTCCTCACCCACCCCATATCCCATGCATACATTAAGGAGAATTGTAAGAGTGGGGGAGGTTTTGCAGGCCTCTTTGTTCTCTCTGTTACTTAGATTGGGACAACACCAATAAGTTCAAGAATTATATTTCATATAGATTGAGCCTTCAAGAGCTGAAACTCTGCCTTCTGCCTTCCCACAAAGTTTCCAGCTCCACTCCTAGTTATGGAAATAGCTTAGAACGATTGGGATCTATCGATCTATCTATTTATCTAGATAGAGGGTAAAGAAAGTCAACATTCATGAATTTACGAAGGATTTATATATGTTTACCAACTTCAGCGGTTAGAAAGGTGAGAATTCGGATAAAAGTGAGAAAAAACAGGGTTAAAGGGAAGCATTATTTACCATTTTGTTGAGACCAACACATTGCTTTCCATATTGGCTTCTTCATCTTCTTGAGGGATGAGGAAGATGAAGGTGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGAAGCTATTCAAGTGTGTTGCAGGAGGACTCAACTTGAACTGCTCTTCATTTACTCAACTTGA

mRNA sequence

ATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGACCAACACATTGCTTTCCATATTGGCTTCTTCATCTTCTTGAGGGATGAGGAAGATGAAGGTGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGAAGCTATTCAAGTGTGTTGCAGGAGGACTCAACTTGAACTGCTCTTCATTTACTCAACTTGA

Coding sequence (CDS)

ATGGAAGCTGCGATTTGCGGTCGACTGCCTCTTTCACCCTACCATTTCTTCAATTCCACCAGGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAACGATGCTATCAGTTGCTGAGCTCGGAAAAGGTGGAGGATTGTTAGAAAAGCCAGCCACAGAGAAGACAACACCTGGCCGCGAATCTGAGTTTAATGTTAGGAAATCAAGGAAAATAGCTCCACCTTACCGAGTGTTGCTACACAACGACAATCACAATAAGCGGGAATATGTAGTGCAAGTTCTGATGAAGGTGATCCCTGGAATGACAGTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCCCAAGTGGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAATGGTCTTCTTAGTTCAATTGAGCCTGCAAGCGAAGACCAACACATTGCTTTCCATATTGGCTTCTTCATCTTCTTGAGGGATGAGGAAGATGAAGGTGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGATGAAGATAAAGATGAAGATGAAGATGAAGATGAAGAAGCTATTCAAGTGTGTTGCAGGAGGACTCAACTTGAACTGCTCTTCATTTACTCAACTTGA

Protein sequence

MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEDQHIAFHIGFFIFLRDEEDEGEDEDEDEDEDEDEDKDEDEDEDEDEDKDEDEDEDEEAIQVCCRRTQLELLFIYST

Homology

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BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-60
Identity = 119/155 (76.77%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPAT 60
           ME AICGRL L+P   FNS + GDK+   K  C NRSIL  LS  A LGKGGG+L+KP  
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQE 120
           EKTTPGRESEF++RKS+KIAPPYRV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEP 154

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BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 50  GGLLEKPATEKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTV 109
           GG+++ P T      ++    V +S+K  P Y+VLLHNDN+NKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPTTT-----QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP 159

[Close]

BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.1e-18
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 134
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVD 134
           RKIAP YRVLLHND+ N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot
Match: Q7NML9 (ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=clpS PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-13
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 72  RKS--RKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVII 131
           RKS  RK  P Y+VLLHND+H    YV++VLMK IP M    A  IM EAH  G+AVVI+
Sbjct: 8   RKSVQRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIV 67

Query: 132 CAQVDAEDHCMQLRGNGLLSSIEP 154
           CA   AE +   L  + L S+ EP
Sbjct: 68  CALEHAEFYSESLNRHNLTSTYEP 91

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BLAST of Csor.00g046410 vs. NCBI nr
Match: KAG6572932.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433 bits (1113), Expect = 1.65e-152
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEDQHIAFHIGFFIFLRDEEDEGEDE 180
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEDQHIAFHIGFFIFLRDEEDEGEDE
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASEDQHIAFHIGFFIFLRDEEDEGEDE 180

Query: 181 DEDEDEDEDEDKDEDEDEDEDEDKDEDEDEDEEAIQVCCRRTQLELLFIYST 232
           DEDEDEDEDEDKDEDEDEDEDEDKDEDEDEDEEAIQVCCRRTQLELLFIYST
Sbjct: 181 DEDEDEDEDEDKDEDEDEDEDEDKDEDEDEDEEAIQVCCRRTQLELLFIYST 232

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BLAST of Csor.00g046410 vs. NCBI nr
Match: XP_022954871.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita moschata] >XP_023541586.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318 bits (816), Expect = 2.17e-108
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 317 bits (812), Expect = 8.84e-108
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKP TEK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 296 bits (757), Expect = 2.11e-99
Identity = 143/156 (91.67%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP HFFN TRPGDKYYFHKQCRNRS L MLSVAELGKGGGLLEKP  EK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 290 bits (743), Expect = 2.85e-97
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPA EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 318 bits (816), Expect = 1.05e-108
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 317 bits (812), Expect = 4.28e-108
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKP TEK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 1.02e-99
Identity = 143/156 (91.67%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP HFFN TRPGDKYYFHKQCRNRS L MLSVAELGKGGGLLEKP  EK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 1.38e-97
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPA EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 5.61e-97
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60
           MEAAICGR+PLSP  FF ST+PGDKYYFHKQCRNRS L M+SVAELGKGGGLLEKP  EK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASE 156
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPAS+
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASD 156

[Close]

BLAST of Csor.00g046410 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 232.6 bits (592), Expect = 3.1e-61
Identity = 119/155 (76.77%), Postives = 131/155 (84.52%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPAT 60
           ME AICGRL L+P   FNS + GDK+   K  C NRSIL  LS  A LGKGGG+L+KP  
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQE 120
           EKTTPGRESEF++RKS+KIAPPYRV+LHNDN NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEP 154

[Close]

BLAST of Csor.00g046410 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-40
Identity = 92/155 (59.35%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHK-QCRNRSILTMLSV-AELGKGGGLLEKPAT 60
           ME AICGRL L+P   FNS + GDK+   K  C NRSIL  LS  A LGKGGG+L+KP  
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQE 120
           EKTTPGRESEF++RKS+KIAPPYRV+LHNDN NKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
                          DAE HCMQLRGNGLLSS+EP
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEP 124

The following BLAST results are available for this feature:

BLAST of Csor.00g046410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	4.4e-60	76.77	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.1e-21	51.92	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	4.1e-18	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.9e-15	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q7NML9	6.8e-13	51.19	ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter violaceus (strain...	[more]

BLAST of Csor.00g046410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572932.1	1.65e-152	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
XP_022954871.1	2.17e-108	99.36	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita mosch...	[more]
XP_022994956.1	8.84e-108	98.72	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_022136971.1	2.11e-99	91.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_004137466.1	2.85e-97	90.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]

BLAST of Csor.00g046410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GS56	1.05e-108	99.36	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1K0P0	4.28e-108	98.72	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1C511	1.02e-99	91.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A0A0LSY6	1.38e-97	90.38	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A1S3C561	5.61e-97	89.74	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]

BLAST of Csor.00g046410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.1e-61	76.77	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	3.0e-40	59.35	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 78..144 e-value: 1.2E-17 score: 63.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 76..153 e-value: 2.2E-20 score: 74.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..216
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 1..156
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g046410.m01	Csor.00g046410.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity