Csor.00g044510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g044510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Csor_Chr18: 1321468 .. 1324471 (-)
RNA-Seq Expression	Csor.00g044510
Synteny	Csor.00g044510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGGTATTGAACTATCGATTAATCTGCTTTTGAATACACATTGTCTTTCAGATGCTATCATTGTTTGGATAATCATAGACGATTCGATTCTTTACAAACACGCTTGAGTAATCTTGAACTCGATTAATATTAAGAACTCACTTGTTCGATTTTAGGGGTGATTTACAAATTAAGCCCTAAATCATTGTGCCTTTTCAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGGTCAGTAGTTGGCTGAAATTCTCTTGTTTTTTCATCCAGTATGCGGGTATCTATATGCATATATGTGATAATTCAATATTGATTTGGTTGTTCATCTTATTTTCAATCCATTTTGTATATCTGTATGAGAATCTGTACATGAACATCCTTAAGAGTCTCATTTGGTTGAAGCAATTTGCAGGTTGGTAGTGGTAAATTGCTTAAGCTTTGGAGTGGGCATCATAAGCCCATAAAATTCATCCTGTTTTCTTGGGATGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGGTAAATGTATTCTATTCTCTTCACAATGCCTTTACAACCTCTTTGATTGATGCATTTTCGGTAGCTTTTCGTCGTCGTAATTTTTCCCTCGAACTTTATGCTAGTTTGCTGGATGTGGAACTTGTGGGAAGCGCACAGCCAATATTATACTGTCTCATGGAACATAAGTCGTCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCGAGCTCCCTCGATGGCAGTTTAAAGGTTGGTAAACTATAACATTGTATCTATTATTCTTTTGAGGTCTGGTAACCTTATAGCTTGATTAACATTTCTGGGTTGCAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATGTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGAAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGCCAATTATTTGCATCAACAGGACACAAGTAATGTATGCTACTTGGAAATTTCTCTGTGTTGTTTGTAGTACGACTTTCCTTTTCTGTTATTTTTTAAATTCTTATTATCGTCGTTCTAAAATCCCACATCAGTTGGAAAGAGGAACGAAACATTCCTTATAAGGATGTGGAAATCTCTCCCTAGTGGATGTGTTTTAAAAACATTGAAGGGAAGCCTGAAAGTGAAAACCCAAAGAGGACAATATCTGCTAGTGGTGGATTTGAGCTGTTATATATGGTATCAAAGCCAGACACCAAGCGGTGTGCCAACAAGGACGCTGGGCCCCAAGGAGGTGGATTGTGAGATCCCGCATCGGTTGGAGAGGAGAACAAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTATTCGCGTTTTAAAAACCTTGAGGGGAAGCCCGAACTTGAAAACCCAAAGAGAACAATATTTGCTAGTGGTATCAAAGCCAGACACCAGGGGGTGTGCCAGCGAGGACACAGGGCCCCAAAAGGGTGGATTGTGAGAACCCACATTAGTTGGAGGGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAGAAACCTTGATGAGAATCCTGAATAGAAAAGTTAGGACAATATATGCCAGTGATGGGCTTGGGCTTGGCTGTTATATATTTTCTTTCCTTTGACAACAATTAATCTTATACAAGCTGCAATATATTTTCTTTCCTTTGACAACAATTAATCTTATACAAGCTGCAAGACCATCTTTGTTCCTTTGCCTTGTACACTTTAATGGTAACTTCATGTTCAAGTTTCCACCATTAATGCAGGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGTAATTACTCCTCAGATGTAATTTTCTTGTTCGAGGCAATTTAATGTTCTGTTCTTCGTGTCCTTTTGTCAATGAACACAAACTTATATGGGATCTATCAACAGGGAGAATAACCAACTTGGTAGCAGTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAGCCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCAGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCGGTTCACTGAATCAGCAAATATTTGATATGAAGGTCACTCTCTCTTTCAACTCTTCTACATTGTGCCTTTACTGTAGCTGCTAAGTAAGTCCAATGAATAAATCGCAGCTTCTATTATCAATATATTCATACTCCCTTGCCATTGTGTGTTCAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCAAAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCCATTGA

mRNA sequence

ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGGTTGGTAGTGGTAAATTGCTTAAGCTTTGGAGTGGGCATCATAAGCCCATAAAATTCATCCTGTTTTCTTGGGATGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAAGCGCACAGCCAATATTATACTGTCTCATGGAACATAAGTCGTCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCGAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATGTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGAAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGCCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCAGTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAGCCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCAGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCGGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCAAAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCCATTGA

Coding sequence (CDS)

ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCAAAAACAGGCGAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCTCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCTTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGGTTGGTAGTGGTAAATTGCTTAAGCTTTGGAGTGGGCATCATAAGCCCATAAAATTCATCCTGTTTTCTTGGGATGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTGTGTCTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAAGCGCACAGCCAATATTATACTGTCTCATGGAACATAAGTCGTCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCGAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGGTCATGTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGAAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGCCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCAAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCGATAGTCAGAGGATCATTCAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCAGTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAGCCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCAGGGAGAATCCAAATCTCGTCGGATTCACAAGTGCCGGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCAAAGTTGCTTGACATGATGCAGACTCGTTTGTTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCCATTGA

Protein sequence

MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIWDIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVMEMNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH

Homology

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BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-54
Identity = 150/443 (33.86%), Postives = 233/443 (52.60%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI  WD KTG   L    CASP++GL ++  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSG 127
           GS+F WS +KPQ+ ++SYP+EPI  LA+  +G YL GG  SG+I+LWEV +GKLLK W G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILY--CLMEHKSSLT 187
           H++ +  ++FS DDS L++GS DG I VWS+I L D +        LY     EH  S+T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVD 247
            ++   G   ++IISSS D + K W L  G +         I  + L P     ++G  D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GKIFASRLEFGLDNCITIKESQLFASTGHKG-AITALAFSQMD--LVSASEDCTVCIWDI 307
            KI+      G  N  +   +Q+  S   KG AIT LA+      L+S SED  VC+WD 
Sbjct: 241 SKIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDP 300

Query: 308 DSQRIIQKLDH----KKGRITNLVAVPRSSLL------ISTSSRKRVL-KQFDKYPQPAN 367
            S R ++ L H    +KG + N+  V ++ +       +S  SR  ++    +KY +P  
Sbjct: 301 KSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVE 360

Query: 368 LSTSTIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWA 427
            +   I +     P  + P    F SA  +++Q+ +++ +G SAA +M+++ RL+     
Sbjct: 361 DTMDGI-VTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEME-RLKLEY-- 420

Query: 428 SRMTKQVMEMNNHLQSKLLDMMQ 435
               K+ ++MN   Q    +++Q
Sbjct: 421 ----KRSLQMNEQWQKNYENLLQ 426

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BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.5e-32
Identity = 101/335 (30.15%), Postives = 168/335 (50.15%), Query Frame = 0


Query: 23  TIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLS-KPQSP 82
           T+W+P TG  LL      +   GL  L  ++L+       G +G   + VW L  + Q  
Sbjct: 21  TVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLG------GQLGKNYINVWELQRRDQLQ 80

Query: 83  LRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDD 142
            +     P+  L+++ +G+YL  G  + +I+LWEV +G LL + + H++ +  + F+ D 
Sbjct: 81  QKIVCPGPVNCLSASPNGLYLVAGI-AESIYLWEVSTGHLLAILNSHYQDVTCLTFTDDS 140

Query: 143 SFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGLITMSGYSMSMIISS 202
           S +I+G+ D ++ VW + S+L VE     +P  Y    H   +T +    G   + + +S
Sbjct: 141 SHIISGAKDSLVLVWGLYSVLQVETSRGPEP-RYVWSRHSLPITDVQCGIGGPQARVATS 200

Query: 203 SLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNC- 262
           SLD ++K WD+ SG +  +      IT +   P E  LF G  DG I+   L    +   
Sbjct: 201 SLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVIYQVDLYTTPEQRE 260

Query: 263 ITIKESQLFASTGHKGAITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDHKKGR 322
                 Q     GH+  +T L+ S +D   L+S S D TVC+WDI S++ ++ + H +G 
Sbjct: 261 RPFHPEQEMVFKGHRNQVTCLSVS-LDGSMLISGSHDETVCVWDIQSKQSLRSVPH-RGP 320

Query: 323 ITN--LVAVPRSSLLISTSSRKRVLKQFDKYPQPA 351
           +TN  ++A P S++L + S     L  F K+ Q A
Sbjct: 321 VTNVFIIAAP-SNMLRAESKPSFPLPHFSKHLQGA 344

[Close]

BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot
Match: Q68EI0 (WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-26
Identity = 94/344 (27.33%), Postives = 169/344 (49.13%), Query Frame = 0


Query: 24  IWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLR 83
           ++DP TG   L      + S  L  L  E+++ +Q      +G   + VW + + +  L+
Sbjct: 22  VYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQ------LGKNYINVWEIQR-KDQLQ 81

Query: 84  SYPLEP--IGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDD 143
              + P  +  L ++ DG+Y+  G     I+LWEV +G LL + S H + +  I F+ D 
Sbjct: 82  QKIVCPGIVTCLCASPDGLYVLAGIAEA-IYLWEVSTGNLLAILSRHFQDLSCIKFTDDS 141

Query: 144 SFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGLITMSGYSMSMIISS 203
           S  ++G  D +  +W++ S++ ++   + +P  + L  H   +T +        + + ++
Sbjct: 142 SHFVSGGKDNLAFIWNLSSVVQLDSSRTPEP-RHILSRHSLPITDIHCGLMGPQARVATA 201

Query: 204 SLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVDGKIF-ASRLEFGLDNC 263
           SLD ++K W++ SG +  +     GI  +   P E FLF G  DG IF  S     L   
Sbjct: 202 SLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDGNIFQVSLCSTSLSRD 261

Query: 264 ITIKE----SQLFASTGHKGAITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDH 323
            T +     +Q+F   GH+  +T L+ S MD   L+S S D TV +WD+ S++ I  ++H
Sbjct: 262 KTFQSDSEGNQVF--KGHRNLVTCLSVS-MDGTVLLSGSNDETVRMWDVQSKQCIWTINH 321

Query: 324 KKGRITNLVAVPR-SSLLISTSSRKRVLKQFDKYPQPANLSTST 357
            +G +TN   +P  +++ +S S     L +F ++  P+     T
Sbjct: 322 -RGPVTNAAIIPAPANMFLSDSHPAVPLPRFSRHLNPSEQGDGT 352

[Close]

BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-25
Identity = 94/347 (27.09%), Postives = 165/347 (47.55%), Query Frame = 0


Query: 8   MALAVCSDKNMGS-GITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVG 67
           M +AVC+D         +W+  +G  LL      +   GL  L  E+L+A+Q      +G
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------LG 64

Query: 68  GGSMFVWSLS-KPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLW 127
              +  W L  K Q   +     P+  L ++ +G+Y+  G  S NI+LWEV +G LL + 
Sbjct: 65  KNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAGI-SENIYLWEVSTGNLLVIL 124

Query: 128 SGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLT 187
           S H++ +  + F+ D S  I+G  D ++  WS+ S+L  +   +  P  +    H   +T
Sbjct: 125 SRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAP-RHVWSRHTLPIT 184

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVD 247
            L    G  ++ + ++SLD ++K W++ SG +  +     GI  + +   E ++F G  D
Sbjct: 185 DLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSD 244

Query: 248 GKIFASRL---EFGLDNCITIKESQLFASTGHKGAITALAFSQ--MDLVSASEDCTVCIW 307
           G IF   L       +     ++       GH+  +T L+ S     L+S S D TV +W
Sbjct: 245 GSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLW 304

Query: 308 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRV-LKQFDKY 347
           D+ SQ+ ++ +   KG +TN   +     ++S+  R  + L  F+K+
Sbjct: 305 DVQSQQCLRTVT-LKGPVTNACIMLAPVSMLSSDFRPGLPLPHFNKH 342

[Close]

BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 3.5e-24
Identity = 96/348 (27.59%), Postives = 166/348 (47.70%), Query Frame = 0


Query: 8   MALAVCSDK--NMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSV 67
           M +AVC+D    M S I +W+  +G  LL      +   GL  L  E+L+A+Q      +
Sbjct: 5   MEVAVCTDSAAPMWSCI-VWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------L 64

Query: 68  GGGSMFVWSLS-KPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKL 127
           G   +  W L  K Q   +     P+  L ++ +G+Y+  G  + +IHLWEV +G LL +
Sbjct: 65  GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAGV-AESIHLWEVSTGNLLVI 124

Query: 128 WSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSL 187
            S H++ +  + F+ D S  I+G  D ++ VWS+ S+L  +      P  +    H   +
Sbjct: 125 LSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAP-RHVWSHHALPI 184

Query: 188 TGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTV 247
           T L    G  ++ + +SSLD ++K W++ SG +  +      I  + +   E  +F G  
Sbjct: 185 TDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGS 244

Query: 248 DGKIFASRL---EFGLDNCITIKESQLFASTGHKGAITALAFSQ--MDLVSASEDCTVCI 307
           +G IF   L       +     ++       GH+  +T L+ S     L+S S D TV +
Sbjct: 245 EGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRL 304

Query: 308 WDIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRV-LKQFDKY 347
           WD+ S++ I+ +   KG +TN   +     ++S+  R  + L  F+K+
Sbjct: 305 WDVQSKQCIRTV-ALKGPVTNAAILLAPVSMLSSDFRPSLPLPHFNKH 342

[Close]

BLAST of Csor.00g044510 vs. NCBI nr
Match: KAG6573122.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 914 bits (2363), Expect = 0.0
Identity = 461/461 (100.00%), Postives = 461/461 (100.00%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. NCBI nr
Match: KAG7012309.1 (Protein ROOT INITIATION DEFECTIVE 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 910 bits (2353), Expect = 0.0
Identity = 459/461 (99.57%), Postives = 460/461 (99.78%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. NCBI nr
Match: XP_022954958.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata])

HSP 1 Score: 909 bits (2349), Expect = 0.0
Identity = 458/461 (99.35%), Postives = 459/461 (99.57%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDG YLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. NCBI nr
Match: XP_023542664.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 895 bits (2313), Expect = 0.0
Identity = 450/460 (97.83%), Postives = 456/460 (99.13%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVG+AQP+LYCL+EH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KS LTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGH+EGITEIVLHPTEQFLF
Sbjct: 181 KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVA PRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNLVGFTSA SLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSF 460
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSF
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSF 460

[Close]

BLAST of Csor.00g044510 vs. NCBI nr
Match: XP_022994395.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima])

HSP 1 Score: 890 bits (2299), Expect = 0.0
Identity = 450/461 (97.61%), Postives = 455/461 (98.70%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMI VWSMISLLDVELVGSAQPILY LMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMISLLDVELVGSAQPILYSLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQ HVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFS MDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DI+SQ IIQKL+HKKGRITNLVAVPRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DINSQMIIQKLEHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNL+GFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL
Match: A0A6J1GSK9 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111457062 PE=4 SV=1)

HSP 1 Score: 909 bits (2349), Expect = 0.0
Identity = 458/461 (99.35%), Postives = 459/461 (99.57%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDG YLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL
Match: A0A6J1K132 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111490125 PE=4 SV=1)

HSP 1 Score: 890 bits (2299), Expect = 0.0
Identity = 450/461 (97.61%), Postives = 455/461 (98.70%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKPIKFILFSWDDSFLITGSADGMI VWSMISLLDVELVGSAQPILY LMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMISLLDVELVGSAQPILYSLMEH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQ HVEGITEIVLHPTEQFLF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFS MDLVSASEDCTVCIW
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQFDKYPQPANLSTSTIPLF 360
           DI+SQ IIQKL+HKKGRITNLVAVPRSSLLISTS+RKRVLKQFDKYPQPANLSTSTIPLF
Sbjct: 301 DINSQMIIQKLEHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF 360

Query: 361 PSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420
           PSSRPL ENPNL+GFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
Sbjct: 361 PSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME 420

Query: 421 MNNHLQSKLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
           MNNHLQS+LLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH
Sbjct: 421 MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL
Match: A0A5A7UJJ9 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001670 PE=4 SV=1)

HSP 1 Score: 740 bits (1911), Expect = 1.43e-266
Identity = 373/474 (78.69%), Postives = 413/474 (87.13%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIP+CASP YG I LRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG++F+WSL+KPQ P+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKP+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELV ++QP++YCLM+H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMI+GTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+I ASRLE G DNCIT+KE+Q+ A  GHKGAITALAFSQ DL+SASEDCTVCIW
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQF-----DKYPQPANLSTS 360
           DI  QRIIQKLDHKKGRITNLVA+PRSSL ISTS+RKRVL QF     DKYPQPANL  S
Sbjct: 301 DISRQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVLNQFSMSSLDKYPQPANLMKS 360

Query: 361 TIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PL+EN N +GFTS  SLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420

Query: 421 KQVMEMNNHLQSKLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFH 461
           KQVM+MNNHLQS++LDMM+ RLF         KK+KD+RDRVA+  EK P SFH
Sbjct: 421 KQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKRPSSFH 473

[Close]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL
Match: A0A5D3BJZ3 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004600 PE=4 SV=1)

HSP 1 Score: 739 bits (1908), Expect = 4.09e-266
Identity = 373/474 (78.69%), Postives = 413/474 (87.13%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIP+CASP YG I LRNEF VASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG++F+WSL+KPQ P+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSGK
Sbjct: 61  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKP+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELV ++QP++YCLM+H
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 180

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMI+GTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+I ASRLE G DNCIT+KE+Q+ A  GHKGAITALAFSQ DL+SASEDCTVCIW
Sbjct: 241 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 300

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQF-----DKYPQPANLSTS 360
           DI  QRIIQKLDHKKGRITNLVA+PRSSL ISTS+RKRVL QF     DKYPQPANL  S
Sbjct: 301 DISRQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVLNQFSMSSLDKYPQPANLMKS 360

Query: 361 TIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PL+EN N +GFTS  SLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420

Query: 421 KQVMEMNNHLQSKLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFH 461
           KQVM+MNNHLQS++LDMM+ RLF         KK+KD+RDRVA+  EK P SFH
Sbjct: 421 KQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 473

[Close]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL
Match: A0A1S4DU43 (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 739 bits (1908), Expect = 7.67e-266
Identity = 373/474 (78.69%), Postives = 413/474 (87.13%), Query Frame = 0


Query: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIP+CASP YG I LRNEF VASQTR
Sbjct: 18  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 77

Query: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK 120
           KEGSVGGG++F+WSL+KPQ P+ SY LE IGPLASTKD VYLAGG HSGNIHLWEVGSGK
Sbjct: 78  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 137

Query: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180
           LLKLWSGHHKP+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELV ++QP++YCLM+H
Sbjct: 138 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 197

Query: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240
           KSSLTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMI+GTQ H+EGIT IVLHPTEQ LF
Sbjct: 198 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 257

Query: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300
           SGTVDG+I ASRLE G DNCIT+KE+Q+ A  GHKGAITALAFSQ DL+SASEDCTVCIW
Sbjct: 258 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 317

Query: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSSRKRVLKQF-----DKYPQPANLSTS 360
           DI  QRIIQKLDHKKGRITNLVA+PRSSL ISTS+RKRVL QF     DKYPQPANL  S
Sbjct: 318 DISRQRIIQKLDHKKGRITNLVAIPRSSL-ISTSNRKRVLNQFSMSSLDKYPQPANLMKS 377

Query: 361 TIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420
           TIPLF S +PL+EN N +GFTS  SLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 378 TIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 437

Query: 421 KQVMEMNNHLQSKLLDMMQTRLFP--------KKRKDQRDRVARTREKHPLSFH 461
           KQVM+MNNHLQS++LDMM+ RLF         KK+KD+RDRVA+  EK P SFH
Sbjct: 438 KQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 490

[Close]

BLAST of Csor.00g044510 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-55
Identity = 150/443 (33.86%), Postives = 233/443 (52.60%), Query Frame = 0


Query: 8   MALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGG 67
           M + V +  ++  GI  WD KTG   L    CASP++GL ++  +FL +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSG 127
           GS+F WS +KPQ+ ++SYP+EPI  LA+  +G YL GG  SG+I+LWEV +GKLLK W G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILY--CLMEHKSSLT 187
           H++ +  ++FS DDS L++GS DG I VWS+I L D +        LY     EH  S+T
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFD-DFQRQQGNTLYEHNFNEHTMSVT 180

Query: 188 GLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLFSGTVD 247
            ++   G   ++IISSS D + K W L  G +         I  + L P     ++G  D
Sbjct: 181 DIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARD 240

Query: 248 GKIFASRLEFGLDNCITIKESQLFASTGHKG-AITALAFSQMD--LVSASEDCTVCIWDI 307
            KI+      G  N  +   +Q+  S   KG AIT LA+      L+S SED  VC+WD 
Sbjct: 241 SKIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDP 300

Query: 308 DSQRIIQKLDH----KKGRITNLVAVPRSSLL------ISTSSRKRVL-KQFDKYPQPAN 367
            S R ++ L H    +KG + N+  V ++ +       +S  SR  ++    +KY +P  
Sbjct: 301 KSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVE 360

Query: 368 LSTSTIPLFPSSRPLRENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWA 427
            +   I +     P  + P    F SA  +++Q+ +++ +G SAA +M+++ RL+     
Sbjct: 361 DTMDGI-VTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQG-SAATEMEME-RLKLEY-- 420

Query: 428 SRMTKQVMEMNNHLQSKLLDMMQ 435
               K+ ++MN   Q    +++Q
Sbjct: 421 ----KRSLQMNEQWQKNYENLLQ 426

[Close]

BLAST of Csor.00g044510 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-13
Identity = 74/308 (24.03%), Postives = 124/308 (40.26%), Query Frame = 0


Query: 61  KEGSVGGGSMFVWSLSKPQS----PLRSYPL-----EPIGPLASTKDGVYLAGGAHSGNI 120
           K G  G G++   + S  QS      RSY L      P+     +  G ++   +    I
Sbjct: 383 KIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTI 442

Query: 121 HLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQ 180
            LW       L  + GH+ P+    FS    +  + S D    +WSM  +  + ++    
Sbjct: 443 RLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHL 502

Query: 181 PILYCLMEHKSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSG-MIRGTQGHVEGITEI 240
             + C+  H             + + I + S D +++ WD+ +G  +R   GH   +  +
Sbjct: 503 SDVDCVQWHP------------NCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSL 562

Query: 241 VLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMD--L 300
            + P  +++ SG  DG I     +     CIT          GH   + +L++S     L
Sbjct: 563 AMSPDGRYMASGDEDGTIM--MWDLSTARCIT-------PLMGHNSCVWSLSYSGEGSLL 622

Query: 301 VSASEDCTVCIWDIDSQRIIQKLDHKKG---RITNLVAVPRSSLLIST--SSRKRVLKQF 352
            S S DCTV +WD+ S   + K + K G   R+ +L   P  S  +     SR+ +L   
Sbjct: 623 ASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAA 669

[Close]

BLAST of Csor.00g044510 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-13
Identity = 66/258 (25.58%), Postives = 117/258 (45.35%), Query Frame = 0


Query: 90  IGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSA 149
           I  +A + D  ++   +    + LW+V +G L+K   GH      + F+   + +++GS 
Sbjct: 74  ISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSF 133

Query: 150 DGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGL-ITMSGYSMSMIISSSLDGSLK 209
           D  + +W +          +    L  L  H   +T +     G   S+I+SSS DG  +
Sbjct: 134 DETVRIWDV----------TTGKCLKVLPAHSDPVTAVDFNRDG---SLIVSSSYDGLCR 193

Query: 210 FWDLMSGMIRGTQGHVEG--ITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKES 269
            WD  +G    T    E   ++ +   P  +F+  GT+D  +        L N  + K  
Sbjct: 194 IWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTL-------RLWNISSAKFL 253

Query: 270 QLFASTGHKGA--ITALAFSQMD---LVSASEDCTVCIWDIDSQRIIQKLDHKKGRITNL 329
           + +  TGH  A    + AFS  +   +VS SED  V +W+++S++++QKL+     + N+
Sbjct: 254 KTY--TGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNV 309

Query: 330 VAVPRSSLLISTSSRKRV 340
              P  +L+ S S  K V
Sbjct: 314 ACHPTENLIASGSLDKTV 309

[Close]

BLAST of Csor.00g044510 vs. TAIR 10
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-12
Identity = 48/177 (27.12%), Postives = 80/177 (45.20%), Query Frame = 0


Query: 72  VWSLSKPQSPLR-SYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHK 131
           +WS+ K  SP+       P+  +A   + V +  GA SG I LW++   K+++ ++GH  
Sbjct: 42  LWSIGKTTSPMSLCGHTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRS 101

Query: 132 PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGLITM 191
               + F     FL +GS+D  + VW      D    G       C+  +K    G+ T+
Sbjct: 102 NCSAVEFHPFGEFLASGSSDTNLRVW------DTRKKG-------CIQTYKGHTRGISTI 161

Query: 192 S-GYSMSMIISSSLDGSLKFWDLMSG-MIRGTQGHVEGITEIVLHPTEQFLFSGTVD 246
                   ++S  LD  +K WDL +G ++   + H   I  +  HP E  L +G+ D
Sbjct: 162 EFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSAD 205

[Close]

BLAST of Csor.00g044510 vs. TAIR 10
Match: AT1G61210.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-10
Identity = 46/177 (25.99%), Postives = 79/177 (44.63%), Query Frame = 0


Query: 72  VWSLSKPQSPLR-SYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHK 131
           +W++ KP S +        +  +A     V +  GA SG I LW+V   K+++ ++GH  
Sbjct: 42  LWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRS 101

Query: 132 PIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEHKSSLTGLITM 191
               + F     FL +GS+D  + +W      D+   G       C+  +K    G+ T+
Sbjct: 102 NCSAVEFHPFGEFLASGSSDANLKIW------DIRKKG-------CIQTYKGHSRGISTI 161

Query: 192 S-GYSMSMIISSSLDGSLKFWDLMSG-MIRGTQGHVEGITEIVLHPTEQFLFSGTVD 246
                   ++S  LD  +K WDL +G ++   + H   I  +  HP E  L +G+ D
Sbjct: 162 RFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSAD 205

The following BLAST results are available for this feature:

BLAST of Csor.00g044510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	1.9e-54	33.86	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	4.5e-32	30.15	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q68EI0	1.7e-26	27.33	WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1	[more]
Q3SZD4	1.4e-25	27.09	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q9BV38	3.5e-24	27.59	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]

BLAST of Csor.00g044510 vs. NCBI nr


Match Name	Identity	Description
KAG6573122.1	100.00	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7012309.1	99.57	Protein ROOT INITIATION DEFECTIVE 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954958.1	99.35	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata]	[more]
XP_023542664.1	97.83	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994395.1	97.61	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima]	[more]

BLAST of Csor.00g044510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSK9	0.0	99.35	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K132	0.0	97.61	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7UJJ9	1.43e-266	78.69	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BJZ3	4.09e-266	78.69	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DU43	7.67e-266	78.69	protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of Csor.00g044510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	1.3e-55	33.86	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G25150.1	1.3e-13	24.03	TBP-associated factor 5	[more]
AT3G49660.1	1.6e-13	25.58	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G11160.1	9.0e-12	27.12	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G61210.1	5.0e-10	25.99	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 198..212 score: 35.67 coord: 144..158 score: 34.74 coord: 288..302 score: 37.37
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 170..211 e-value: 0.61 score: 18.4 coord: 264..301 e-value: 8.2E-6 score: 35.3 coord: 118..157 e-value: 2.4E-6 score: 37.1 coord: 213..252 e-value: 30.0 score: 7.7 coord: 78..115 e-value: 46.0 score: 6.5 coord: 304..344 e-value: 38.0 score: 7.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 272..301 e-value: 9.1E-4 score: 20.0 coord: 120..157 e-value: 2.8E-4 score: 21.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 125..158 score: 11.310488
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 271..310 score: 12.279615
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 177..220 score: 8.904377
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..163 e-value: 8.0E-19 score: 70.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 164..429 e-value: 8.5E-26 score: 92.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..461
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 8..452
None	No IPR available	PANTHER	PTHR18763:SF4	PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE	coord: 8..452
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 271..304 score: 9.414692
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 125..158 score: 9.467419
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 288..302
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 198..212
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g044510.m01	Csor.00g044510.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding