Csor.00g044280 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g044280
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein TAPETUM DETERMINANT 1-like
Location	Csor_Chr18: 1456334 .. 1458099 (+)
RNA-Seq Expression	Csor.00g044280
Synteny	Csor.00g044280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGGTCTATCTACTAGTACTACTACTACCCGGCGAGTTTTGGTGATTTTCGCTTCGGTTTTGTTCATCTTCTTGTCCGTATCCGCCTTTCTTACAGGTCTGTATCATCTCTTTCACATTATTCTCTGTCCTCCGCTCATTGTTTTGAATTTGTTTTTGCTGTGGTTGAGTTGTTACACTTATCCATTGCCTCTCTTTGTGTACCTTTCGTTTGTCTTCTTCTATTATTTTATTTGTTTTTCTATCATTGTGCTCCTTGTCCTGTATCTCCTTTGTCCCTTTTGTGCTGCCTATAGAAACAAAGATGTTATTCTTATTCTAGTACTTTTTTACATAATTCCCTGCCTTGCATGATTGCAGATCTGAATATTATTGGTTCCTTTATGGACTCAAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTTCTTACTAGTAAGTTCTTGAAATCTGATCTAATCGTGTTTCGTAAACGTCGGTACAAAATCGTGGAGGGAGGACTCGAATTCTGAGTTTGTTGCGCTGTTTTTTTACTTCTCTCGTTTTGTTTTCACTATGATTTTTGCTTTATTTTGAAATAATGATCTCGGGGTTGGGGGTAGGGAGAGATTGGCTACTCAATTGCATAAATGGTTGATTTGGTGTCAGAATTACACGCCCGTCCATTCTTAGTAATGAAGCTAAGGCGCACCTTTTGCTAGGTAGCTTTCCAGCCCTTCGGCTCTTTAACCCATATGGCCTTTCTGTATCTGTTTTTGGGGAAATCTTCTTTCATAGATCCCTGATACCCATCAGGCTTTCTTCCTGTTCTGTCCACGATTCATTGATTACACAAAAGAAACCTTTGGTTCAAAAGCGCCGAGCATTATAATGCCTTTCTGAGTTTTACCTTTATGGCTTCTAATTGATTCATTCCTTTAAGCCAAAAGCTTTGCCGTTTAGTGTGTATGTAGAATTATATAATACGATTAGCTGATGCTATATTCTCATTAGTGGGATGGGTGGCGGTAGGACAGTTTTATTAGCTTTTAAATTTATCATGTATGTAATGGACGTAATTTTAAATTTTCCTTCGTGCTAACAAATTGATTGTGATAAGGAAGTGCTCCCGCGGATTTCTCTTTTTCAGACTCTCTTTTAGTCTTTACCTCTCCTCTATTGCCATTGAATTTGCTTTATCTTTTTTAATTGCTTATTTATGCTTTCTCAACACATCTTTATGACCTCCAGAAAGTGTATTTTGTGTGTCTGGAGACTTTTGGCCCATTGGTGGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGTTGGTGCCTGAGCAATGCCCATTATCCGATGCTAACAAATGACGTCGACCCATTTCTTTATTTGAATGTGCTTTAGGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGAGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTCAACGACGGCAAGCCTCTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGA

mRNA sequence

ATGATGAAAGGTCTATCTACTAGTACTACTACTACCCGGCGAGTTTTGGTGATTTTCGCTTCGGTTTTGTTCATCTTCTTGTCCGTATCCGCCTTTCTTACAGATCTGAATATTATTGGTTCCTTTATGGACTCAAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTTCTTACTAGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGAGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTCAACGACGGCAAGCCTCTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGA

Coding sequence (CDS)

ATGATGAAAGGTCTATCTACTAGTACTACTACTACCCGGCGAGTTTTGGTGATTTTCGCTTCGGTTTTGTTCATCTTCTTGTCCGTATCCGCCTTTCTTACAGATCTGAATATTATTGGTTCCTTTATGGACTCAAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTTCTTACTAGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGAGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTCAACGACGGCAAGCCTCTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGA

Protein sequence

MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVCN

Homology

[Close]

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-37
Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 13  RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVT------PRRKL 72
           RR L++ A++L   L   A ++        +++S    LR  L  T+ T        RK+
Sbjct: 3   RRRLLVSATLLSYLLYGMALVS--------VEASGGEKLRDNLDLTKTTTSSPSISHRKM 62

Query: 73  LT------REAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 132
           L       +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C +GC I
Sbjct: 63  LLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 122

Query: 133 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 183
             IH  CGWFSSA LINPR+FKR+ YDDCLVN+GKPL +G TLSF YANTFPY LSV+ V
Sbjct: 123 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 175

[Close]

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 55  LRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENAC 114
           +   R    RKLL      +   RI G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+C
Sbjct: 52  INENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 111

Query: 115 ATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP 174
            + C+I  IH  CGWFSS  L+NPR+F+RL YDDCLVNDG+PL  G +LSFQYAN+F YP
Sbjct: 112 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 171

Query: 175 LSVSSVVC 183
           LSV+SV C
Sbjct: 172 LSVASVSC 178

[Close]

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-30
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 88  DIVINQGPTAPLPTGIPTYTVEVENACATG------CDIHGIHFKCGWFSSAHLINPRIF 147
           DI I QG   PLP+G+P YTV+V N CA G      C I GIH +CGWFSS  L++PR+F
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 148 KRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 183
           +RL +DDCL+NDG+PL+ G T+SF+Y N+FPY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

[Close]

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.7e-22
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 78  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDIHGIHFKCGWFSSAHLIN 137
           R+  + C++ ++V+ Q     LP+GIPTY+VE+ N C T C ++ +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 138 PRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 183
           P  F+R+ ++DCLV  G  L     +SFQY+N+F YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 106 YTVEVENACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYD--DCLVNDGKPLVYGGTL 165
           + VEV N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 166 SFQYANTFPYPL 176
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of Csor.00g044280 vs. NCBI nr
Match: KAG6573145.1 (Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369 bits (946), Expect = 1.13e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 183

[Close]

BLAST of Csor.00g044280 vs. NCBI nr
Match: XP_022955262.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022955263.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata])

HSP 1 Score: 364 bits (935), Expect = 5.36e-127
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKGLSTSTTTTRRVLVIFAS LFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGLSTSTTTTRRVLVIFASALFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 183

[Close]

BLAST of Csor.00g044280 vs. NCBI nr
Match: XP_023542781.1 (protein TAPETUM DETERMINANT 1 [Cucurbita pepo subsp. pepo] >XP_023542782.1 protein TAPETUM DETERMINANT 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360 bits (923), Expect = 3.50e-125
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKGLSTSTTT RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGLSTSTTT-RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 182

[Close]

BLAST of Csor.00g044280 vs. NCBI nr
Match: XP_022994477.1 (protein TAPETUM DETERMINANT 1 [Cucurbita maxima] >XP_022994478.1 protein TAPETUM DETERMINANT 1 [Cucurbita maxima])

HSP 1 Score: 353 bits (905), Expect = 1.94e-122
Identity = 178/183 (97.27%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKG S STT  RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGPSISTTN-RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 182

[Close]

BLAST of Csor.00g044280 vs. NCBI nr
Match: KAG7012329.1 (Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346 bits (887), Expect = 1.73e-118
Identity = 172/177 (97.18%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 4   GLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVTPR 63
            +S  TTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVTPR
Sbjct: 85  AISLFTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVTPR 144

Query: 64  RKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDIHGI 123
           RKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDIHGI
Sbjct: 145 RKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGI 204

Query: 124 HFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 205 HFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 261

[Close]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL
Match: A0A6J1GTG1 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111457275 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 2.59e-127
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKGLSTSTTTTRRVLVIFAS LFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGLSTSTTTTRRVLVIFASALFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 183

[Close]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL
Match: A0A6J1JVY2 (protein TAPETUM DETERMINANT 1 OS=Cucurbita maxima OX=3661 GN=LOC111490188 PE=4 SV=1)

HSP 1 Score: 353 bits (905), Expect = 9.41e-123
Identity = 178/183 (97.27%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMKG S STT  RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV
Sbjct: 1   MMKGPSISTTN-RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60

Query: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 120
           TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NACATGCDI
Sbjct: 61  TPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDI 120

Query: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180
           HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV
Sbjct: 121 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 180

Query: 181 VCN 183
           VCN
Sbjct: 181 VCN 182

[Close]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL
Match: A0A6J1C840 (protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 311 bits (796), Expect = 4.32e-106
Identity = 157/185 (84.86%), Postives = 167/185 (90.27%), Query Frame = 0


Query: 1   MMKG-LSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTR 60
           MMK  LST+TT TRRV VIFASV FIF S+SA LTDL+IIGSFM+SSPPS+L  GL +T 
Sbjct: 1   MMKDDLSTTTTATRRVSVIFASVFFIFFSLSALLTDLDIIGSFMNSSPPSYLPLGLNTTI 60

Query: 61  VTPRRKLL-TREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGC 120
           V P RKLL T+EA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NAC TGC
Sbjct: 61  VAPHRKLLLTKEATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGC 120

Query: 121 DIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVS 180
           DI+GIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVS
Sbjct: 121 DIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVS 180

Query: 181 SVVCN 183
           SVVC+
Sbjct: 181 SVVCS 185

[Close]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL
Match: A0A6J1C7I8 (protein TAPETUM DETERMINANT 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009090 PE=4 SV=1)

HSP 1 Score: 310 bits (795), Expect = 5.93e-106
Identity = 155/184 (84.24%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MMKG-LSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTR 60
           MMK  LST+TT TRRV VIFASV FIF S+SA LTDL+IIGSFM+SSPPS+L  GL +T 
Sbjct: 1   MMKDDLSTTTTATRRVSVIFASVFFIFFSLSALLTDLDIIGSFMNSSPPSYLPLGLNTTI 60

Query: 61  VTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCD 120
           V P RKLL  +A  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NAC TGCD
Sbjct: 61  VAPHRKLLLTKATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCD 120

Query: 121 IHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSS 180
           I+GIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSS
Sbjct: 121 IYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSS 180

Query: 181 VVCN 183
           VVC+
Sbjct: 181 VVCS 184

[Close]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL
Match: A0A6J1EDD3 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 6.17e-103
Identity = 155/183 (84.70%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MMKGLSTSTTTTRRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRV 60
           MMK LST    TRRV VIFASV FIF  VSA LTDL+I  SFMDSSPPSFLR GL ST  
Sbjct: 1   MMKDLST----TRRVSVIFASVFFIFFLVSAILTDLDIFHSFMDSSPPSFLRLGLNSTIG 60

Query: 61  TPRRKLL-TREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCD 120
            P RKLL TREA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NAC TGCD
Sbjct: 61  APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCD 120

Query: 121 IHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSS 180
           I+GIHFKCGWFSSAHLINPR+FKRL YDDCLVNDGKPLVYGGTLSFQYANT+PYPLSVSS
Sbjct: 121 IYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSS 179

Query: 181 VVC 182
           VVC
Sbjct: 181 VVC 179

[Close]

BLAST of Csor.00g044280 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-38
Identity = 88/182 (48.35%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 13  RRVLVIFASVLFIFLSVSAFLTDLNIIGSFMDSSPPSFLRSGLRSTRVT------PRRKL 72
           RR L++ A++L   L   A ++        +++S    LR  L  T+ T        RK+
Sbjct: 3   RRRLLVSATLLSYLLYGMALVS--------VEASGGEKLRDNLDLTKTTTSSPSISHRKM 62

Query: 73  LT------REAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENACATGCDI 132
           L       +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C +GC I
Sbjct: 63  LLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCII 122

Query: 133 HGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSV 183
             IH  CGWFSSA LINPR+FKR+ YDDCLVN+GKPL +G TLSF YANTFPY LSV+ V
Sbjct: 123 SRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFV 175

[Close]

BLAST of Csor.00g044280 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 154.5 bits (389), Expect = 8.5e-38
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 55  LRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVENAC 114
           +   R    RKLL      +   RI G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+C
Sbjct: 52  INENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 111

Query: 115 ATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP 174
            + C+I  IH  CGWFSS  L+NPR+F+RL YDDCLVNDG+PL  G +LSFQYAN+F YP
Sbjct: 112 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 171

Query: 175 LSVSSVVC 183
           LSV+SV C
Sbjct: 172 LSVASVSC 178

[Close]

BLAST of Csor.00g044280 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 48.1 bits (113), Expect = 8.6e-06
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 106 YTVEVENACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYD--DCLVNDGKPLVYGGTL 165
           + VEV N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 166 SFQYANTFPYPL 176
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

The following BLAST results are available for this feature:

BLAST of Csor.00g044280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TLJ2	2.4e-37	48.35	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q1G3T1	1.2e-36	56.25	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q2QR54	6.4e-30	57.43	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
Q8S6P9	3.7e-22	42.86	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
A8MS78	1.2e-04	38.89	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Csor.00g044280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573145.1	1.13e-128	100.00	Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022955262.1	5.36e-127	98.91	protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022955263.1 protein ...	[more]
XP_023542781.1	3.50e-125	98.91	protein TAPETUM DETERMINANT 1 [Cucurbita pepo subsp. pepo] >XP_023542782.1 prote...	[more]
XP_022994477.1	1.94e-122	97.27	protein TAPETUM DETERMINANT 1 [Cucurbita maxima] >XP_022994478.1 protein TAPETUM...	[more]
KAG7012329.1	1.73e-118	97.18	Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of Csor.00g044280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTG1	2.59e-127	98.91	protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111457275...	[more]
A0A6J1JVY2	9.41e-123	97.27	protein TAPETUM DETERMINANT 1 OS=Cucurbita maxima OX=3661 GN=LOC111490188 PE=4 S...	[more]
A0A6J1C840	4.32e-106	84.86	protein TAPETUM DETERMINANT 1-like isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1C7I8	5.93e-106	84.24	protein TAPETUM DETERMINANT 1-like isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1EDD3	6.17e-103	84.70	protein TAPETUM DETERMINANT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431507...	[more]

BLAST of Csor.00g044280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24972.1	1.7e-38	48.35	tapetum determinant 1	[more]
AT1G32583.1	8.5e-38	56.25	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G05835.1	8.6e-06	38.89	PHD finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 13..182
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 13..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g044280.m01	Csor.00g044280.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination
cellular_component	GO:0016021	integral component of membrane