Csor.00g043640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g043640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 1836111 .. 1836521 (-)
RNA-Seq Expression	Csor.00g043640
Synteny	Csor.00g043640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTAAGTTAAAATCTCCTCTTAAATTACAAACCCATGTCGTCCAAATTCAGGCTGTTAATGGTGTTCGTTCTGTTGCAGGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAA

mRNA sequence

ATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAA

Coding sequence (CDS)

ATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAA

Protein sequence

MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH

Homology

[Close]

BLAST of Csor.00g043640 vs. NCBI nr
Match: KAG6573209.1 (hypothetical protein SDJN03_27096, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (542), Expect = 1.94e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110

[Close]

BLAST of Csor.00g043640 vs. NCBI nr
Match: KAG7012383.1 (hypothetical protein SDJN02_25135, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (542), Expect = 2.97e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 14  MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 73

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 74  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 123

[Close]

BLAST of Csor.00g043640 vs. NCBI nr
Match: XP_022955080.1 (uncharacterized protein LOC111457151 isoform X2 [Cucurbita moschata])

HSP 1 Score: 213 bits (542), Expect = 3.61e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 20  MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 79

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 80  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 129

[Close]

BLAST of Csor.00g043640 vs. NCBI nr
Match: XP_022955079.1 (uncharacterized protein LOC111457151 isoform X1 [Cucurbita moschata])

HSP 1 Score: 213 bits (542), Expect = 3.85e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 22  MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 81

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 82  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 131

[Close]

BLAST of Csor.00g043640 vs. NCBI nr
Match: XP_023542794.1 (uncharacterized protein LOC111802598 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198 bits (504), Expect = 2.25e-63
Identity = 103/110 (93.64%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSA   AAEVALVVGSAKDHLGVQQFHHQITITT  TAA DEHALFRR
Sbjct: 20  MMIATSSAPMAEKSATAAAAEVALVVGSAKDHLGVQQFHHQITITTGTTAAPDEHALFRR 79

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL FH
Sbjct: 80  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELEFH 129

[Close]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL
Match: A0A6J1GU64 (uncharacterized protein LOC111457151 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457151 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.75e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 20  MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 79

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 80  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 129

[Close]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL
Match: A0A6J1GUX4 (uncharacterized protein LOC111457151 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457151 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.87e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR
Sbjct: 22  MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 81

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH
Sbjct: 82  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 131

[Close]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL
Match: A0A6J1K0E9 (uncharacterized protein LOC111489966 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489966 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 6.61e-60
Identity = 99/110 (90.00%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEK A  T AEVAL VGSAKDHLG+QQFHHQITITT +TAA DE ALFRR
Sbjct: 20  MMIATSSAPMAEKLA--TVAEVALAVGSAKDHLGIQQFHHQITITTGSTAAPDEQALFRR 79

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKP AGELGFH
Sbjct: 80  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPNAGELGFH 127

[Close]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL
Match: A0A6J1K229 (uncharacterized protein LOC111489966 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489966 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 7.04e-60
Identity = 99/110 (90.00%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRR 60
           MMIATSSAPMAEK A  T AEVAL VGSAKDHLG+QQFHHQITITT +TAA DE ALFRR
Sbjct: 22  MMIATSSAPMAEKLA--TVAEVALAVGSAKDHLGIQQFHHQITITTGSTAAPDEQALFRR 81

Query: 61  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH 110
           NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKP AGELGFH
Sbjct: 82  NSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPNAGELGFH 129

[Close]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL
Match: A0A6J1KQ53 (uncharacterized protein LOC111495477 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495477 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 3.11e-38
Identity = 74/102 (72.55%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 8   APMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRRNSFRRSS 67
           A MAEK+ A+ A  VA+ VGS +DHLGV Q HHQITITT+NTAA  E    RRNSFRR S
Sbjct: 102 ATMAEKAGAKVA--VAVAVGSQQDHLGVAQVHHQITITTANTAAPVERGFLRRNSFRRPS 161

Query: 68  SSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGF 109
           SSWFLDPKKVLL FATVSCIGSM+LI FTLAIGKP   E GF
Sbjct: 162 SSWFLDPKKVLLLFATVSCIGSMILIYFTLAIGKPDTEERGF 201

[Close]

BLAST of Csor.00g043640 vs. TAIR 10
Match: AT4G21215.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 40  HQITITTSNTAAAD---------EHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSM 99
           HQIT+TT+ TAA +              R++SF+RS +SW LDPKK++LFFAT+S +GS+
Sbjct: 118 HQITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSI 177

Query: 100 VLICFTLAIGKPTAGEL 108
           +LI FTL+I K   G++
Sbjct: 178 LLIIFTLSISKSNPGDM 194

[Close]

BLAST of Csor.00g043640 vs. TAIR 10
Match: AT4G21215.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 40  HQITITTSNTAAAD---------EHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSM 99
           HQIT+TT+ TAA +              R++SF+RS +SW LDPKK++LFFAT+S +GS+
Sbjct: 120 HQITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSI 179

Query: 100 VLICFTLAIGKPTAGEL 108
           +LI FTL+I K   G++
Sbjct: 180 LLIIFTLSISKSNPGDM 196

The following BLAST results are available for this feature:

BLAST of Csor.00g043640 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g043640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573209.1	1.94e-69	100.00	hypothetical protein SDJN03_27096, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012383.1	2.97e-69	100.00	hypothetical protein SDJN02_25135, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022955080.1	3.61e-69	100.00	uncharacterized protein LOC111457151 isoform X2 [Cucurbita moschata]	[more]
XP_022955079.1	3.85e-69	100.00	uncharacterized protein LOC111457151 isoform X1 [Cucurbita moschata]	[more]
XP_023542794.1	2.25e-63	93.64	uncharacterized protein LOC111802598 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g043640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GU64	1.75e-69	100.00	uncharacterized protein LOC111457151 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GUX4	1.87e-69	100.00	uncharacterized protein LOC111457151 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K0E9	6.61e-60	90.00	uncharacterized protein LOC111489966 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K229	7.04e-60	90.00	uncharacterized protein LOC111489966 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KQ53	3.11e-38	72.55	uncharacterized protein LOC111495477 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Csor.00g043640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21215.1	2.6e-13	48.05	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT4G21215.2	2.6e-13	48.05	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34064	OS04G0672300 PROTEIN	coord: 10..107
None	No IPR available	PANTHER	PTHR34064:SF4	PROTEIN, PUTATIVE-RELATED	coord: 10..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g043640.m01	Csor.00g043640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane