Csor.00g042610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g042610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Csor_Chr07: 6280350 .. 6280952 (+)
RNA-Seq Expression	Csor.00g042610
Synteny	Csor.00g042610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTGGATTAATGTTTTTCCGTCTAGTGCTGAATCGTTTCTACTGTTCAATGGTTGGAATTTCATCCAATTCTCTTATTGCTCGGTATTCTCGACTGGGTCAAATCGAGAAAGCTCGGGCTGTGTTCGATGAAATGCGTGACAAAAGCATTGTGTCATGGAACTCCATTGTTGCTGGGTACTTTCACAACAATCGGCCTCAGGAAGCCCAGAACATGTTTGATAAAATGTCTGAGAGAAATACTGTATCTTGGAACAGCTTGATTTCTGGGTATATTAAGAATGGGATGATCAATGAAGCTCGGAAAGTGTTTGATAAAATGCCTGAGAGGAATGTTGTTTCTTGGACTGCAATGGTTAGGGGGTATGCGAAGGAGGGTATGATTTCTGAGGCAGAGGCACTTTTTTGGCAAATGCCTGAAAGGAATGTAGTGTCTTGGACGGTGATGTTGGAGGGGCTTATTCAAGAAGGTCGGATTGATGAGGCTTGTAGGCTTTTTGATATGATGCCGGAGAAGGATGTGGTGGCTAGAACTAGTATGATTGGAGGGTATTGCCAAGCAGGACGTTTAGCTGAAGCTCGTAGGACTTTTCGATGA

mRNA sequence

ATGTCCTCTGGATTAATGTTTTTCCGTCTAGTGCTGAATCGTTTCTACTGTTCAATGGTTGGAATTTCATCCAATTCTCTTATTGCTCGGTATTCTCGACTGGGTCAAATCGAGAAAGCTCGGGCTGTGTTCGATGAAATGCGTGACAAAAGCATTGTGTCATGGAACTCCATTGTTGCTGGGTACTTTCACAACAATCGGCCTCAGGAAGCCCAGAACATGTTTGATAAAATGTCTGAGAGAAATACTGTATCTTGGAACAGCTTGATTTCTGGGTATATTAAGAATGGGATGATCAATGAAGCTCGGAAAGTGTTTGATAAAATGCCTGAGAGGAATGTTGTTTCTTGGACTGCAATGGTTAGGGGGTATGCGAAGGAGGGTATGATTTCTGAGGCAGAGGCACTTTTTTGGCAAATGCCTGAAAGGAATGTAGTGTCTTGGACGGTGATGTTGGAGGGGCTTATTCAAGAAGGTCGGATTGATGAGGCTTGTAGGCTTTTTGATATGATGCCGGAGAAGGATGTGGTGGCTAGAACTAGTATGATTGGAGGGTATTGCCAAGCAGGACGTTTAGCTGAAGCTCGTAGGACTTTTCGATGA

Coding sequence (CDS)

ATGTCCTCTGGATTAATGTTTTTCCGTCTAGTGCTGAATCGTTTCTACTGTTCAATGGTTGGAATTTCATCCAATTCTCTTATTGCTCGGTATTCTCGACTGGGTCAAATCGAGAAAGCTCGGGCTGTGTTCGATGAAATGCGTGACAAAAGCATTGTGTCATGGAACTCCATTGTTGCTGGGTACTTTCACAACAATCGGCCTCAGGAAGCCCAGAACATGTTTGATAAAATGTCTGAGAGAAATACTGTATCTTGGAACAGCTTGATTTCTGGGTATATTAAGAATGGGATGATCAATGAAGCTCGGAAAGTGTTTGATAAAATGCCTGAGAGGAATGTTGTTTCTTGGACTGCAATGGTTAGGGGGTATGCGAAGGAGGGTATGATTTCTGAGGCAGAGGCACTTTTTTGGCAAATGCCTGAAAGGAATGTAGTGTCTTGGACGGTGATGTTGGAGGGGCTTATTCAAGAAGGTCGGATTGATGAGGCTTGTAGGCTTTTTGATATGATGCCGGAGAAGGATGTGGTGGCTAGAACTAGTATGATTGGAGGGTATTGCCAAGCAGGACGTTTAGCTGAAGCTCGTAGGACTTTTCGATGA

Protein sequence

MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTFR

Homology

[Close]

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot
Match: Q9FXB9 (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-66
Identity = 120/191 (62.83%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 9   RLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRP 68
           +L+L R Y +  G++ +  I+R SR+G+I +AR  FD ++ K+I SWNSIV+GYF N  P
Sbjct: 5   KLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLP 64

Query: 69  QEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEG 128
           +EA+ +FD+MSERN VSWN L+SGYIKN MI EAR VF+ MPERNVVSWTAMV+GY +EG
Sbjct: 65  KEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEG 124

Query: 129 MISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQ 188
           M+ EAE+LFW+MPERN VSWTVM  GLI +GRID+A +L+DMMP KDVVA T+MIGG C+
Sbjct: 125 MVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCR 184

Query: 189 AGRLAEARRTF 200
            GR+ EAR  F
Sbjct: 185 EGRVDEARLIF 195

[Close]

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 5.8e-61
Identity = 109/192 (56.77%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 9   RLVLNRFYCSMV-GISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNR 68
           +++L R Y + +   ++N  I   SR+G+I +AR +FD    KSI SWNS+VAGYF N  
Sbjct: 4   QILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLM 63

Query: 69  PQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKE 128
           P++A+ +FD+M +RN +SWN L+SGY+KNG I+EARKVFD MPERNVVSWTA+V+GY   
Sbjct: 64  PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123

Query: 129 GMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYC 188
           G +  AE+LFW+MPE+N VSWTVML G +Q+GRID+AC+L++M+P+KD +ARTSMI G C
Sbjct: 124 GKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLC 183

Query: 189 QAGRLAEARRTF 200
           + GR+ EAR  F
Sbjct: 184 KEGRVDEAREIF 195

[Close]

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-44
Identity = 82/178 (46.07%), Postives = 121/178 (67.98%), Query Frame = 0


Query: 22  ISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSER 81
           +S N++I  Y++ G+I+KA  +FDEM +++IVSWNS+V       R  EA N+F++M  R
Sbjct: 141 VSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR 200

Query: 82  NTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMP 141
           + VSW +++ G  KNG ++EAR++FD MPERN++SW AM+ GYA+   I EA+ LF  MP
Sbjct: 201 DVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMP 260

Query: 142 ERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTF 200
           ER+  SW  M+ G I+   +++AC LFD MPEK+V++ T+MI GY +     EA   F
Sbjct: 261 ERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVF 318

[Close]

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-39
Identity = 78/178 (43.82%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 22  ISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSER 81
           +S N L+  + +  +I +AR  FD M  + +VSWN+I+ GY  + +  EA+ +FD+   +
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 82  NTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMP 141
           +  +W +++SGYI+N M+ EAR++FDKMPERN VSW AM+ GY +   +  A+ LF  MP
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339

Query: 142 ERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTF 200
            RNV +W  M+ G  Q G+I EA  LFD MP++D V+  +MI GY Q+G   EA R F
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397

[Close]

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot
Match: Q9FHF9 (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 74/174 (42.53%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 27  LIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSERNTVSW 86
           LI  +    +I++AR VF+++    +  +  ++ GY  +NR  +A N+FD+M  R+ VSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 87  NSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMPERNVV 146
           NS+ISG ++ G +N A K+FD+MPER+VVSWTAMV G  + G + +AE LF+QMP ++  
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160

Query: 147 SWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTFR 201
           +W  M+ G +Q G++D+A +LF  MP K+V++ T+MI G  Q  R  EA   F+
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFK 214

[Close]

BLAST of Csor.00g042610 vs. NCBI nr
Match: KAG6595446.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1028), Expect = 1.29e-140
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTFR 200
           SMIGGYCQAGRLAEARRTFR
Sbjct: 181 SMIGGYCQAGRLAEARRTFR 200

[Close]

BLAST of Csor.00g042610 vs. NCBI nr
Match: XP_022924963.1 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita moschata] >XP_022924964.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita moschata] >KAG7027446.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1013), Expect = 3.47e-131
Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCS+VGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSVVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           SMIGGYCQAGRLAEARR F
Sbjct: 181 SMIGGYCQAGRLAEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. NCBI nr
Match: XP_022966207.1 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita maxima] >XP_022966208.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 390 bits (1001), Expect = 2.21e-129
Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCSM+GISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSMLGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQ AQNMFDKMSERNTVSWN LISGYIKNGMINEARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFHNNRPQAAQNMFDKMSERNTVSWNGLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRID+ACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDDACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           SMIGGYCQAGRLAEARR F
Sbjct: 181 SMIGGYCQAGRLAEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. NCBI nr
Match: XP_023517429.1 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389 bits (1000), Expect = 3.13e-129
Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEM DKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMGDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQEAQNMFDKMSERNTVSWN LISGYIKNGMINEARKVFDKMPERNVVSWT+M
Sbjct: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNGLISGYIKNGMINEARKVFDKMPERNVVSWTSM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGM+SEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMMSEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           SMIGGYCQAGRLAEARR F
Sbjct: 181 SMIGGYCQAGRLAEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. NCBI nr
Match: XP_022158883.1 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 363 bits (933), Expect = 1.13e-119
Identity = 178/199 (89.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVL+RFYCS VGISSNSLIARYSRLGQIEKAR+VFD+MR+KSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLDRFYCSTVGISSNSLIARYSRLGQIEKARSVFDQMREKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYF NN+P+EAQNMFDKMSERNT+SWN L+SGYIKNGMI+EARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFQNNQPEEAQNMFDKMSERNTISWNGLVSGYIKNGMISEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGY KEGMI EAE LFWQMPE+NVVSWTVML GLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYVKEGMIYEAETLFWQMPEKNVVSWTVMLGGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           +MIGGYCQ GRL EARR F
Sbjct: 181 NMIGGYCQKGRLIEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL
Match: A0A6J1EAQ8 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432351 PE=3 SV=1)

HSP 1 Score: 394 bits (1013), Expect = 1.68e-131
Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCS+VGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSVVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           SMIGGYCQAGRLAEARR F
Sbjct: 181 SMIGGYCQAGRLAEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL
Match: A0A6J1HMD2 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111465947 PE=3 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 1.07e-129
Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVLNRFYCSM+GISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLNRFYCSMLGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYFHNNRPQ AQNMFDKMSERNTVSWN LISGYIKNGMINEARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFHNNRPQAAQNMFDKMSERNTVSWNGLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRID+ACRLFDMMPEKDVVART
Sbjct: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDDACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           SMIGGYCQAGRLAEARR F
Sbjct: 181 SMIGGYCQAGRLAEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL
Match: A0A6J1DXB5 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025343 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 5.49e-120
Identity = 178/199 (89.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVL+RFYCS VGISSNSLIARYSRLGQIEKAR+VFD+MR+KSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLDRFYCSTVGISSNSLIARYSRLGQIEKARSVFDQMREKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYF NN+P+EAQNMFDKMSERNT+SWN L+SGYIKNGMI+EARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFQNNQPEEAQNMFDKMSERNTISWNGLVSGYIKNGMISEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGY KEGMI EAE LFWQMPE+NVVSWTVML GLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYVKEGMIYEAETLFWQMPEKNVVSWTVMLGGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           +MIGGYCQ GRL EARR F
Sbjct: 181 NMIGGYCQKGRLIEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL
Match: A0A6J1DX33 (pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025343 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 1.73e-119
Identity = 178/199 (89.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           MSSGLMFFRLVL+RFYCS VGISSNSLIARYSRLGQIEKAR+VFD+MR+KSIVSWNSIVA
Sbjct: 1   MSSGLMFFRLVLDRFYCSTVGISSNSLIARYSRLGQIEKARSVFDQMREKSIVSWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYF NN+P+EAQNMFDKMSERNT+SWN L+SGYIKNGMI+EARKVFDKMPERNVVSWTAM
Sbjct: 61  GYFQNNQPEEAQNMFDKMSERNTISWNGLVSGYIKNGMISEARKVFDKMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGY KEGMI EAE LFWQMPE+NVVSWTVML GLIQEGRIDEACRLFDMMPEKDVVART
Sbjct: 121 VRGYVKEGMIYEAETLFWQMPEKNVVSWTVMLGGLIQEGRIDEACRLFDMMPEKDVVART 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           +MIGGYCQ GRL EARR F
Sbjct: 181 NMIGGYCQKGRLIEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL
Match: A0A5A7SMU0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00070 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 2.72e-115
Identity = 174/199 (87.44%), Postives = 183/199 (91.96%), Query Frame = 0


Query: 1   MSSGLMFFRLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVA 60
           M SGLMFFRLVLNRFY S   ISSN+LIARYSRLGQIEKARAVFDEMRDK+I+SWNSIVA
Sbjct: 1   MFSGLMFFRLVLNRFYSSNFIISSNALIARYSRLGQIEKARAVFDEMRDKNIISWNSIVA 60

Query: 61  GYFHNNRPQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAM 120
           GYF N RPQEAQNMFDKMSERNT+SWN LISGYI NGMINEARKVFD+MPERNVVSWTAM
Sbjct: 61  GYFQNKRPQEAQNMFDKMSERNTISWNGLISGYINNGMINEARKVFDRMPERNVVSWTAM 120

Query: 121 VRGYAKEGMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVART 180
           VRGY KEG+ISEAE LFWQMPE+NVVSWTVML GLIQEGR+DEACRLFDMMPEKDVV RT
Sbjct: 121 VRGYVKEGIISEAETLFWQMPEKNVVSWTVMLGGLIQEGRMDEACRLFDMMPEKDVVTRT 180

Query: 181 SMIGGYCQAGRLAEARRTF 199
           +MIGGYCQ GRL EARR F
Sbjct: 181 NMIGGYCQVGRLVEARRLF 199

[Close]

BLAST of Csor.00g042610 vs. TAIR 10
Match: AT1G56690.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-67
Identity = 120/191 (62.83%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 9   RLVLNRFYCSMVGISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRP 68
           +L+L R Y +  G++ +  I+R SR+G+I +AR  FD ++ K+I SWNSIV+GYF N  P
Sbjct: 5   KLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLP 64

Query: 69  QEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEG 128
           +EA+ +FD+MSERN VSWN L+SGYIKN MI EAR VF+ MPERNVVSWTAMV+GY +EG
Sbjct: 65  KEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEG 124

Query: 129 MISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQ 188
           M+ EAE+LFW+MPERN VSWTVM  GLI +GRID+A +L+DMMP KDVVA T+MIGG C+
Sbjct: 125 MVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCR 184

Query: 189 AGRLAEARRTF 200
            GR+ EAR  F
Sbjct: 185 EGRVDEARLIF 195

[Close]

BLAST of Csor.00g042610 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 235.3 bits (599), Expect = 4.1e-62
Identity = 109/192 (56.77%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 9   RLVLNRFYCSMV-GISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNR 68
           +++L R Y + +   ++N  I   SR+G+I +AR +FD    KSI SWNS+VAGYF N  
Sbjct: 4   QILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLM 63

Query: 69  PQEAQNMFDKMSERNTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKE 128
           P++A+ +FD+M +RN +SWN L+SGY+KNG I+EARKVFD MPERNVVSWTA+V+GY   
Sbjct: 64  PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123

Query: 129 GMISEAEALFWQMPERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYC 188
           G +  AE+LFW+MPE+N VSWTVML G +Q+GRID+AC+L++M+P+KD +ARTSMI G C
Sbjct: 124 GKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLC 183

Query: 189 QAGRLAEARRTF 200
           + GR+ EAR  F
Sbjct: 184 KEGRVDEAREIF 195

[Close]

BLAST of Csor.00g042610 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 7.1e-46
Identity = 82/178 (46.07%), Postives = 121/178 (67.98%), Query Frame = 0


Query: 22  ISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSER 81
           +S N++I  Y++ G+I+KA  +FDEM +++IVSWNS+V       R  EA N+F++M  R
Sbjct: 141 VSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR 200

Query: 82  NTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMP 141
           + VSW +++ G  KNG ++EAR++FD MPERN++SW AM+ GYA+   I EA+ LF  MP
Sbjct: 201 DVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMP 260

Query: 142 ERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTF 200
           ER+  SW  M+ G I+   +++AC LFD MPEK+V++ T+MI GY +     EA   F
Sbjct: 261 ERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVF 318

[Close]

BLAST of Csor.00g042610 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-41
Identity = 78/178 (43.82%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 22  ISSNSLIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSER 81
           +S N L+  + +  +I +AR  FD M  + +VSWN+I+ GY  + +  EA+ +FD+   +
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 82  NTVSWNSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMP 141
           +  +W +++SGYI+N M+ EAR++FDKMPERN VSW AM+ GY +   +  A+ LF  MP
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP 339

Query: 142 ERNVVSWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTF 200
            RNV +W  M+ G  Q G+I EA  LFD MP++D V+  +MI GY Q+G   EA R F
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397

[Close]

BLAST of Csor.00g042610 vs. TAIR 10
Match: AT5G46460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-37
Identity = 74/174 (42.53%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 27  LIARYSRLGQIEKARAVFDEMRDKSIVSWNSIVAGYFHNNRPQEAQNMFDKMSERNTVSW 86
           LI  +    +I++AR VF+++    +  +  ++ GY  +NR  +A N+FD+M  R+ VSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 87  NSLISGYIKNGMINEARKVFDKMPERNVVSWTAMVRGYAKEGMISEAEALFWQMPERNVV 146
           NS+ISG ++ G +N A K+FD+MPER+VVSWTAMV G  + G + +AE LF+QMP ++  
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160

Query: 147 SWTVMLEGLIQEGRIDEACRLFDMMPEKDVVARTSMIGGYCQAGRLAEARRTFR 201
           +W  M+ G +Q G++D+A +LF  MP K+V++ T+MI G  Q  R  EA   F+
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFK 214

The following BLAST results are available for this feature:

BLAST of Csor.00g042610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FXB9	2.1e-66	62.83	Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop...	[more]
Q56XI1	5.8e-61	56.77	Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop...	[more]
O64766	1.0e-44	46.07	Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop...	[more]
Q9SY02	1.3e-39	43.82	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9FHF9	1.7e-36	42.53	Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidop...	[more]

BLAST of Csor.00g042610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595446.1	1.29e-140	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022924963.1	3.47e-131	98.99	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucur...	[more]
XP_022966207.1	2.21e-129	97.49	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucur...	[more]
XP_023517429.1	3.13e-129	97.49	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucur...	[more]
XP_022158883.1	1.13e-119	89.45	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isofor...	[more]

BLAST of Csor.00g042610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAQ8	1.68e-131	98.99	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like OS=Cuc...	[more]
A0A6J1HMD2	1.07e-129	97.49	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like OS=Cuc...	[more]
A0A6J1DXB5	5.49e-120	89.45	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isofor...	[more]
A0A6J1DX33	1.73e-119	89.45	pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isofor...	[more]
A0A5A7SMU0	2.72e-115	87.44	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Csor.00g042610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56690.1	1.5e-67	62.83	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09410.1	4.1e-62	56.77	pentatricopeptide (PPR) repeat-containing protein	[more]
AT2G35030.1	7.1e-46	46.07	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	9.0e-41	43.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G46460.1	1.2e-37	42.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 146..177 e-value: 2.0E-7 score: 28.7 coord: 180..200 e-value: 0.0031 score: 15.6 coord: 25..53 e-value: 1.3E-6 score: 26.2 coord: 115..146 e-value: 2.4E-6 score: 25.3 coord: 84..115 e-value: 1.3E-9 score: 35.6 coord: 53..82 e-value: 9.6E-5 score: 20.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 53..82 e-value: 2.6E-6 score: 27.3 coord: 180..199 e-value: 0.0018 score: 18.4 coord: 84..114 e-value: 1.3E-10 score: 40.7 coord: 115..145 e-value: 1.8E-8 score: 34.1 coord: 146..175 e-value: 7.0E-7 score: 29.1 coord: 23..51 e-value: 3.5E-6 score: 26.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 144..178 score: 11.542307
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 82..116 score: 12.912469
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 51..81 score: 9.613118
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 143..200 e-value: 9.4E-16 score: 59.7 coord: 1..81 e-value: 3.4E-15 score: 57.8 coord: 82..142 e-value: 2.2E-21 score: 78.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 31..173
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 93..168
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 69..133 coord: 23..96
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 124..200
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 69..133 coord: 23..96
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 124..200
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 93..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g042610.m01	Csor.00g042610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding