Csor.00g042010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g042010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description30S ribosomal protein S31, chloroplastic-like
LocationCsor_Chr07: 5795472 .. 5795985 (-)
RNA-Seq ExpressionCsor.00g042010
SyntenyCsor.00g042010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGGTATGCATTTGTTACCTTCTTTTGTACTGTTCACCTTCAATCGATTGATTTTTGTTCTATTTTTGCTTTTTTAGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGTATTTGTCTTTACTCTCTCTTTTCTTTGTTCGTTCGAATTTCCTTTGTTCTCATTTGATTTTTTTTGGGGAAAAACGTTCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCGCCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATTAAGATCGAAATTGACGAGTCTCTTTTCTCTCGCTAG

mRNA sequence

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCGCCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATTAAGATCGAAATTGACGAGTCTCTTTTCTCTCGCTAG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCGCCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATTAAGATCGAAATTGACGAGTCTCTTTTCTCTCGCTAG

Protein sequence

MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Homology
[Close]
BLAST of Csor.00g042010 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 24  SFSKSETLGTSLR--TSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]
BLAST of Csor.00g042010 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 23  FSFSKSETL-GTSLRTSTGTSATSSPSSIPA---VYCGRGDKKTEKGKRFKHSFGNARPR 82
           FSFS S+++ G SL +    S +SS S+ PA   +YCGRGD+KT KGKRF HSFGNARP+
Sbjct: 18  FSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPK 77

Query: 83  DKTKGRGTPRVPTPPSPPRKDKFD 103
           +K KGRG P+ P  P      K D
Sbjct: 78  NKNKGRGPPKAPIFPKGDPSQKED 101

[Close]
BLAST of Csor.00g042010 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 52 AVYCGRGDKKTEKGKRFKHSFGNARP-RDKTKGRGTPRVPTPPSPP 97
          AV CGRGDKKT++GKRFK S+GNARP R+K   R   RV  P S P
Sbjct: 29 AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]
BLAST of Csor.00g042010 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227 bits (578), Expect = 1.13e-74
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]
BLAST of Csor.00g042010 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (572), Expect = 9.30e-74
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTG SATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGISATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]
BLAST of Csor.00g042010 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 199 bits (507), Expect = 4.40e-63
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTG---TSATSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]
BLAST of Csor.00g042010 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 192 bits (487), Expect = 9.71e-61
Identity = 104/121 (85.95%), Postives = 109/121 (90.08%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR S+     TS TSSPSSIPAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTEKGKRF  S+GNARPR+KTKGRGTPRVPTPPSPPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]
BLAST of Csor.00g042010 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (472), Expect = 1.88e-58
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 5.47e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match: A0A6J1EV33 (30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438171 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 5.47e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60
           MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTGTSATSSPSSIPAVYCGRGDK 60

Query: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118
           KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR
Sbjct: 61  KTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFSR 118

[Close]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 2.13e-63
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTSTG---TSATSSPSSIPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEID+SLF+
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 186 bits (472), Expect = 9.09e-59
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 186 bits (472), Expect = 9.09e-59
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 0 

Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]
BLAST of Csor.00g042010 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-29
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 24  SFSKSETLGTSLR--TSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]
BLAST of Csor.00g042010 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.8e-04
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 28 SETLGTSLRTSTGTSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNAR-PRDKTKGRGT 87
          S  L  S R S+ + A ++P+      CGRGDKKT+KGKRFK S+GN+R  + K   R  
Sbjct: 21 SAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGSYGNSRGKKQKMIERIK 80

Query: 88 PRVPTPPSPP 97
           ++  P S P
Sbjct: 81 DKLELPRSTP 90

The following BLAST results are available for this feature:
BLAST of Csor.00g042010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O804393.8e-2871.8830S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3... [more]
P479101.3e-1253.5730S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
P479093.5e-0563.0430S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
BLAST of Csor.00g042010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022931892.11.13e-74100.0030S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545... [more]
XP_023517799.19.30e-7499.1530S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022151467.14.40e-6387.6030S ribosomal protein S31, chloroplastic [Momordica charantia][more]
XP_038882305.19.71e-6185.9530S ribosomal protein S31, chloroplastic [Benincasa hispida][more]
XP_008449316.11.88e-5882.64PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1... [more]
BLAST of Csor.00g042010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HRX45.47e-75100.0030S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146... [more]
A0A6J1EV335.47e-75100.0030S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1DDL32.13e-6387.6030S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7TU279.09e-5982.6430S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BL519.09e-5982.6430S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228... [more]
BLAST of Csor.00g042010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G38140.12.7e-2971.88plastid-specific ribosomal protein 4 [more]
AT2G21290.16.8e-0442.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 20..99
e-value: 2.1E-30
score: 104.8
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 56..80
e-value: 3.2E-9
score: 34.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..85
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..117
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g042010.m01Csor.00g042010.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding