Csor.00g040610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g040610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 6109377 .. 6109613 (+)
RNA-Seq Expression	Csor.00g040610
Synteny	Csor.00g040610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGATTCGCGGTGCCGTCTGGCTGGTCGCTGCGGTGGTGGCGACGAGGACGAATCGCGGCGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCGCGGCGGTCATCTCGGTCACTGCGTCGTTTTTGTCTCTGGGTCGATGAGCGGGATTCACTTGGTCCATCAGTCCCCTCCATGGCCCGTGCTACTCTCATCGCGTCAGCGTAGGTCTTAG

mRNA sequence

ATGGGGATGATTCGCGGTGCCGTCTGGCTGGTCGCTGCGGTGGTGGCGACGAGGACGAATCGCGGCGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCGCGGCGGTCATCTCGGTCACTGCGTCGTTTTTGTCTCTGGGTCGATGAGCGGGATTCACTTGGTCCATCAGTCCCCTCCATGGCCCGTGCTACTCTCATCGCGTCAGCGTAGGTCTTAG

Coding sequence (CDS)

ATGGGGATGATTCGCGGTGCCGTCTGGCTGGTCGCTGCGGTGGTGGCGACGAGGACGAATCGCGGCGGTCACCCCAGTCACGGCGTCGCCTCCGTCTCTCGGTTGGTGAGCGGGACCCGCGGCGGTCATCTCGGTCACTGCGTCGTTTTTGTCTCTGGGTCGATGAGCGGGATTCACTTGGTCCATCAGTCCCCTCCATGGCCCGTGCTACTCTCATCGCGTCAGCGTAGGTCTTAG

Protein sequence

MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHLVHQSPPWPVLLSSRQRRS

Homology

[Close]

BLAST of Csor.00g040610 vs. NCBI nr
Match: KAG6605641.1 (hypothetical protein SDJN03_02958, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158 bits (400), Expect = 8.88e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60
          MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL
Sbjct: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHQSPPWPVLLSSRQRRS 78
          VHQSPPWPVLLSSRQRRS
Sbjct: 61 VHQSPPWPVLLSSRQRRS 78

[Close]

BLAST of Csor.00g040610 vs. NCBI nr
Match: KAG6585823.1 (hypothetical protein SDJN03_18556, partial [Cucurbita argyrosperma subsp. sororia] >KAG6602413.1 hypothetical protein SDJN03_07646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (386), Expect = 1.22e-46
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60
          MGM R AVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL
Sbjct: 1  MGMNRDAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHQSPPWPVLLSSRQRRS 78
          VHQSPPWPVLLSSRQRRS
Sbjct: 61 VHQSPPWPVLLSSRQRRS 78

[Close]

BLAST of Csor.00g040610 vs. NCBI nr
Match: KAG6585479.1 (hypothetical protein SDJN03_18212, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151 bits (382), Expect = 4.96e-46
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60
          MGM R AVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL
Sbjct: 1  MGMNRDAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60

Query: 61 VHQSPPWPVLLSSRQRRS 78
          VH+SPPWPVLLSSRQRRS
Sbjct: 61 VHRSPPWPVLLSSRQRRS 78

[Close]

BLAST of Csor.00g040610 vs. NCBI nr
Match: KAG6588580.1 (hypothetical protein SDJN03_17145, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (300), Expect = 6.03e-33
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60
          M M RGAVWLVAA VA R N GGHPSHGVA VSRLVSGT  GHLGHCVV VSGS SGI  
Sbjct: 1  MRMNRGAVWLVAAGVAMRMNHGGHPSHGVAFVSRLVSGTHNGHLGHCVVSVSGSTSGIRS 60

Query: 61 VHQSPPWPVLLSSRQRRS 78
          V +SPPWPVLLSSRQR+S
Sbjct: 61 VDRSPPWPVLLSSRQRKS 78

[Close]

BLAST of Csor.00g040610 vs. NCBI nr
Match: KAG6588345.1 (hypothetical protein SDJN03_16910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (272), Expect = 3.01e-29
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MGMIRGAVWLVAAVVATRTNRGGHPSHGVASVSRLVSGTRGGHLGHCVVFVSGSMSGIHL 60
          M + RGAVWLVAAVVA R N GGHPSHGVASVSRLVSGT  GHLG CVV + GS S    
Sbjct: 1  MRLNRGAVWLVAAVVAMRMNHGGHPSHGVASVSRLVSGTHDGHLGCCVVSIPGSTSQTRS 60

Query: 61 VHQSPPWPVLLSSRQRRS 78
          VH+SP WPVLLSSRQ +S
Sbjct: 61 VHRSPTWPVLLSSRQFKS 78

The following BLAST results are available for this feature:

BLAST of Csor.00g040610 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g040610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605641.1	8.88e-49	100.00	hypothetical protein SDJN03_02958, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585823.1	1.22e-46	97.44	hypothetical protein SDJN03_18556, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585479.1	4.96e-46	96.15	hypothetical protein SDJN03_18212, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588580.1	6.03e-33	79.49	hypothetical protein SDJN03_17145, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588345.1	3.01e-29	73.08	hypothetical protein SDJN03_16910, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g040610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g040610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g040610.m01	Csor.00g040610.m01	mRNA