Csor.00g039010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g039010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description(thale cress) hypothetical protein
LocationCsor_Chr09: 11368645 .. 11368941 (+)
RNA-Seq ExpressionCsor.00g039010
SyntenyCsor.00g039010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTTAGAAGAGGTAGAAAGGAAGATCACTGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAACAAGGTATGGCCGAGTGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCGGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCAAGTGGAACAAAACTTGATCTGTAA

mRNA sequence

ATGGGAGGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTTAGAAGAGGTAGAAAGGAAGATCACTGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAACAAGGTATGGCCGAGTGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCGGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCAAGTGGAACAAAACTTGATCTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAATAGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTTAGAAGAGGTAGAAAGGAAGATCACTGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAACAAGGTATGGCCGAGTGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCGGGCATTGATAGAAAAGCTAAGGATTACATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCAAGTGGAACAAAACTTGATCTGTAA

Protein sequence

MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL
Homology
BLAST of Csor.00g039010 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (538), Expect = 3.28e-69
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98
          PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98

BLAST of Csor.00g039010 vs. NCBI nr
Match: KAG6592314.1 (hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (515), Expect = 1.06e-65
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MGGNNRSKK HSSFSIFNFFKF+RGRKEDH DHSGCWDEMPRS+KVWPSDEDKMHRWVAE
Sbjct: 1  MGGNNRSKKTHSSFSIFNFFKFKRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98
          PGIDRKAKDYIDRIYRNRVLESERQT+TLPASGTKLDL
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTITLPASGTKLDL 98

BLAST of Csor.00g039010 vs. NCBI nr
Match: KAG6592315.1 (hypothetical protein SDJN03_14661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (498), Expect = 4.17e-63
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MG NNRSKKAHSSFSIFNFFKFRRGRKEDH DHS CWDEMPRS+KVWPSDEDKMH WVAE
Sbjct: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDCWDEMPRSSKVWPSDEDKMHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98
          PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKL+L
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLNL 98

BLAST of Csor.00g039010 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (494), Expect = 1.70e-62
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MGGNNRSKKAHSSFSIFNFFK RR RKEDHCDHSG WDE+PRS+K+WPSDEDK+HRWVAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98
          PGIDRKAKDYIDRIYRNRV ESERQTVTLPASGTKLDL
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTKLDL 98

BLAST of Csor.00g039010 vs. NCBI nr
Match: KAG6592307.1 (hypothetical protein SDJN03_14653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (487), Expect = 1.99e-61
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSG WDEMPRS+KVWPSDEDK HRWVAE
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGYWDEMPRSSKVWPSDEDKAHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTKLDL 98
          PGIDRKAKDYID+IYRN V +SERQTVTLPA G KLD+
Sbjct: 61 PGIDRKAKDYIDKIYRNHVFQSERQTVTLPAYGAKLDV 98

BLAST of Csor.00g039010 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 8.19e-52
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSG-CWDEMPRSNKVWPSDEDKMHRWVA 60
          MGGNNR KKAH+SFSIF+FFK RRGRK DHC+HSG C DEMPRS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +G K
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIK 96

BLAST of Csor.00g039010 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.65e-51
Identity = 78/96 (81.25%), Postives = 85/96 (88.54%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSG-CWDEMPRSNKVWPSDEDKMHRWVA 60
          MGGNNR KK+HSSFSIF+FFK RRGRK D+C+HSG C DEMPRS KVWPSDEDK H WVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95
          EPGIDRKAKDYIDRIYRNRV ESERQT+T+  +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTK 96

BLAST of Csor.00g039010 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 3.78e-50
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60
          MGGN R KK+HSSFSIF+FFK RRGRK DH DH G W DEMPRSNKVWPSDEDK H WVA
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

BLAST of Csor.00g039010 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 1.54e-49
Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60
          MGGN R KK+HSSFSIF+FFK +RGRK DH DH G W DEMPRSNKVWPSDEDK H W+A
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+  +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95

BLAST of Csor.00g039010 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 4.56e-42
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 0

Query: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAE 60
          MGG++R KK HSSFSIF+FFK +RGRK D  +H   W+++P S+KVWPSDEDK +RWVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTLPASG 93
          PGIDRKAKDYIDRIY+NRV E+ERQTVT+  +G
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNG 93

BLAST of Csor.00g039010 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 5.4e-15
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 1  MGGNNRSKKAHSS--FSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWV 60
          MGG NRS   HSS  FS+F+FFK RR  +    +  G WD+   + K   SDEDK + WV
Sbjct: 1  MGGKNRS---HSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRVLESERQTVT 89
          AEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLS 83

BLAST of Csor.00g039010 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-10
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 37 WDEMPRSNKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTV 88
          WD++  + K W SDEDK + WVAEPGIDRKA  +I + + +RV ESERQT+
Sbjct: 17 WDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6592316.13.28e-69100.00hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592314.11.06e-6594.90hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592315.14.17e-6393.88hypothetical protein SDJN03_14661, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592308.11.70e-6291.84hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592307.11.99e-6189.80hypothetical protein SDJN03_14653, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KAK68.19e-5282.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1[more]
A0A5A7SWT91.65e-5181.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KBW13.78e-5082.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0K7Y21.54e-4980.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0K8W04.56e-4269.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.15.4e-1551.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.12.4e-1056.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 1..88
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g039010.m01Csor.00g039010.m01mRNA