Csor.00g037170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g037170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr09: 5131977 .. 5132375 (-)
RNA-Seq Expression	Csor.00g037170
Synteny	Csor.00g037170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTACGCAAGAGAATCCACCGCCGGCAAGAAAAAGAAGATCAGAAGGACTACCCCCTTCGGAGGGCAAAGCACCACGTCCACCGTGCGGCGAGGGGTTAGTAAGAGTTATACAACCCTTTCGTCGTACAGACCGGACATGAACGAACGACCGGAAACCCACGTGTATAGCCGTGATGTCTACAACTTGACGAACCCGGGTTTTACCCCCACCGGAAAATCCCCCGTCTATATCGACGATCCTTCACCTTCAGAAACTCAAATCCACGCACCAGTTACTCAAAATCGAACCTGGGAAGCTGATTTTGAAGCGAAATTTGCAGAACCCAGATCGGAAAACGGAACCGGACGACGAAGGAGAAAAAGAAAAATGAAGAATCAGCGAAGGCCAAGGTGA

mRNA sequence

ATGCTCTACGCAAGAGAATCCACCGCCGGCAAGAAAAAGAAGATCAGAAGGACTACCCCCTTCGGAGGGCAAAGCACCACGTCCACCGTGCGGCGAGGGGTTAGTAAGAGTTATACAACCCTTTCGTCGTACAGACCGGACATGAACGAACGACCGGAAACCCACGTGTATAGCCGTGATGTCTACAACTTGACGAACCCGGGTTTTACCCCCACCGGAAAATCCCCCGTCTATATCGACGATCCTTCACCTTCAGAAACTCAAATCCACGCACCAGTTACTCAAAATCGAACCTGGGAAGCTGATTTTGAAGCGAAATTTGCAGAACCCAGATCGGAAAACGGAACCGGACGACGAAGGAGAAAAAGAAAAATGAAGAATCAGCGAAGGCCAAGGTGA

Coding sequence (CDS)

ATGCTCTACGCAAGAGAATCCACCGCCGGCAAGAAAAAGAAGATCAGAAGGACTACCCCCTTCGGAGGGCAAAGCACCACGTCCACCGTGCGGCGAGGGGTTAGTAAGAGTTATACAACCCTTTCGTCGTACAGACCGGACATGAACGAACGACCGGAAACCCACGTGTATAGCCGTGATGTCTACAACTTGACGAACCCGGGTTTTACCCCCACCGGAAAATCCCCCGTCTATATCGACGATCCTTCACCTTCAGAAACTCAAATCCACGCACCAGTTACTCAAAATCGAACCTGGGAAGCTGATTTTGAAGCGAAATTTGCAGAACCCAGATCGGAAAACGGAACCGGACGACGAAGGAGAAAAAGAAAAATGAAGAATCAGCGAAGGCCAAGGTGA

Protein sequence

MLYARESTAGKKKKIRRTTPFGGQSTTSTVRRGVSKSYTTLSSYRPDMNERPETHVYSRDVYNLTNPGFTPTGKSPVYIDDPSPSETQIHAPVTQNRTWEADFEAKFAEPRSENGTGRRRRKRKMKNQRRPR

Homology

[Close]

BLAST of Csor.00g037170 vs. NCBI nr
Match: KAG6592056.1 (hypothetical protein SDJN03_14402, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258 bits (658), Expect = 2.00e-86
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MLYARESTAGKKKKIRRTTPFGGQSTTSTVRRGVSKSYTTLSSYRPDMNERPETHVYSRD 60
           MLYARESTAGKKKKIRRTTPFGGQSTTSTVRRGVSKSYTTLSSYRPDMNERPETHVYSRD
Sbjct: 1   MLYARESTAGKKKKIRRTTPFGGQSTTSTVRRGVSKSYTTLSSYRPDMNERPETHVYSRD 60

Query: 61  VYNLTNPGFTPTGKSPVYIDDPSPSETQIHAPVTQNRTWEADFEAKFAEPRSENGTGRRR 120
           VYNLTNPGFTPTGKSPVYIDDPSPSETQIHAPVTQNRTWEADFEAKFAEPRSENGTGRRR
Sbjct: 61  VYNLTNPGFTPTGKSPVYIDDPSPSETQIHAPVTQNRTWEADFEAKFAEPRSENGTGRRR 120

Query: 121 RKRKMKNQRRPR 132
           RKRKMKNQRRPR
Sbjct: 121 RKRKMKNQRRPR 132

[Close]

BLAST of Csor.00g037170 vs. NCBI nr
Match: KAG6607789.1 (hypothetical protein SDJN03_01131, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (259), Expect = 6.89e-26
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 6  ESTAGKKKKIRRTTPFGGQSTTSTVRRGVSKSYTTLSSYRPDMNERPETHVYSRDVYNLT 65
          ++TAG+KKKI RTTPF  QSTT  VRR + +SYTTLSSY PDMN++P  +VYSRDVYN T
Sbjct: 23 KTTAGEKKKIGRTTPFRRQSTTPAVRRRIGRSYTTLSSYSPDMNKQPGNYVYSRDVYNST 82

Query: 66 NPGFTPTGKSP 76
          NPGFTPTGK P
Sbjct: 83 NPGFTPTGKIP 93

The following BLAST results are available for this feature:

BLAST of Csor.00g037170 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g037170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592056.1	2.00e-86	100.00	hypothetical protein SDJN03_14402, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607789.1	6.89e-26	71.83	hypothetical protein SDJN03_01131, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g037170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g037170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g037170.m01	Csor.00g037170.m01	mRNA