Csor.00g036630 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g036630
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 5495818 .. 5497439 (+)
RNA-Seq ExpressionCsor.00g036630
SyntenyCsor.00g036630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTCGGGTCGGTAAGTATTTCTCGTCTTTCCTTGTTATATGTTTCCTTTTCTAGAGCTTTTCTCTGTATTCATGATGCTGATCTGGTTGGTAAGTACTCATCGTCTTTCCTTGTTGTACGTATTACTGTATTCATGATGCTGGTCACGTCGGTAAGTGCTCGTCGTCTTTCCTTATTATACGTAGTCCTTTTCGAGAGCTTTTCTTTGTATTCATGATGCTGATCAGATCGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGGTTGGGTCGGTAAGTACTCGTCGTCTTTCCTTATCGAGAGTTTTTCTCTGTATCCATGATGCTGATCAGGTCGGTAAGTACTTATCGTCTTTCCTTGTTATGTGTATTATTGTATTCATGATGCTGATTGGGTCGGTAAGTACTCGTCGTCTTTCCTTATTATACGTATTCCTTTTCGAGAGCTTTTCTCTGTATTCATGATGCTGATCTGGCCGATAAGTACTCATCGTCTTTCCTTGTTATACGTATTATTGTATTCATGATGCTGGTCGGGTCGTTAAGTACTTATCGTCTTTCCTTGTTATACGTATTCCTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATTTGGTTGGTAAGTACTCGTCGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGAATTGGTTGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGTTGGTTAGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTAAGTACTCTTCGTCTTTCCTTATTATACGTATTCCTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATCTGGACGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATATTACTGTATTCATGATGCTCGTCAGGTTGGTAAGTTCGTTGTCTTTCCTTATTATACGCATTACTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATCTGGACGGTAAGTACTCATCGTCGTTATACGTATATTACTGTATTCATGATGCTCGTCAAGTCGATAAGTTCTTTGTCTTTCCTTATTATATGCATTACTTTTTGAGAGCTTCTCACTGTATTCATGATGATGGTCGGGTCAGTAAGTACTCATTGTCTTTCCTTATTATATGTATTATTTTTCGAGAGCTTCTCACTGTATTCATGTTGTTGGTCAGGTAGGTAAAGACTCATCGTCTTTCCTTATTATACGTTTTACTTTTCGAGAGTTTTTGATTGTAGTCATGATAATGGTCGGGTCGGTAAGCACTCATTGTCTTTCCTTGTCATGTGTATCACAATTTAATGATTCTTTGAAAGTATTATAAATGATATATCGAATTATCATATGGCTAGGATTGAGTAGAATCTAGAAACTTTTCCAATTTTACCCTTTGACCAATATGCCACGTGGCAAACAAACAATCAAGTGCTCGAGTGTAGGCTTACGTCATAACTGTTATTTTCATGTAGGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAA

mRNA sequence

ATGCTGGTCGGGTCGGTAAGTATTTCTCGTCTTTCCTTGTTATATGTTTCCTTTTCTAGAGCTTTTCTCTGTATTCATGATGCTGATCTGGTTGGTAAGTACTCATCGTCTTTCCTTGTTGTACGTATTACTGTATTCATGATGCTGGTCACGTCGATCGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGGTTGGGTCGGTAAGTACTCGTCGTCTTTCCTTATCGAGAGTTTTTCTCTGTATCCATGATGCTGATCAGGTCGTACTCGTCGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGAATTGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTTGGTAAGTTCGTTGTCTTTCCTTATTATACGCATTACTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATCTGGACGGTAAGTACTCATCGTCGTTATACGTATATTACTGTATTCATGATGCTCGTCAAGTCGATAAGTTCTTTGTCTTTCCTTATTATATGCATTACTTTTTGAGAGCTTCTCACTGTATTCATGATGATGGTCGGGTCAGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAA

Coding sequence (CDS)

ATGCTGGTCGGGTCGGTAAGTATTTCTCGTCTTTCCTTGTTATATGTTTCCTTTTCTAGAGCTTTTCTCTGTATTCATGATGCTGATCTGGTTGGTAAGTACTCATCGTCTTTCCTTGTTGTACGTATTACTGTATTCATGATGCTGGTCACGTCGATCGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGGTTGGGTCGGTAAGTACTCGTCGTCTTTCCTTATCGAGAGTTTTTCTCTGTATCCATGATGCTGATCAGGTCGTACTCGTCGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGAATTGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTTGGTAAGTTCGTTGTCTTTCCTTATTATACGCATTACTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATCTGGACGGTAAGTACTCATCGTCGTTATACGTATATTACTGTATTCATGATGCTCGTCAAGTCGATAAGTTCTTTGTCTTTCCTTATTATATGCATTACTTTTTGAGAGCTTCTCACTGTATTCATGATGATGGTCGGGTCAGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAA

Protein sequence

MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRITVFMMLVTSIGKYSLSFLVIRITVFMMLVGSVSTRRLSLSRVFLCIHDADQVVLVVFPCYTYYCIHDAELVSKYSSSFLVIHITVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSSLYVYYCIHDARQVDKFFVFPYYMHYFLRASHCIHDDGRVSSEFDELAAGSLPRVHGNFS
Homology
[Close]
BLAST of Csor.00g036630 vs. NCBI nr
Match: KAG6592110.1 (hypothetical protein SDJN03_14456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437 bits (1123), Expect = 3.36e-154
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 

Query: 1   MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRITVFMMLVTSIGKYSLSF 60
           MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRITVFMMLVTSIGKYSLSF
Sbjct: 1   MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRITVFMMLVTSIGKYSLSF 60

Query: 61  LVIRITVFMMLVGSVSTRRLSLSRVFLCIHDADQVVLVVFPCYTYYCIHDAELVSKYSSS 120
           LVIRITVFMMLVGSVSTRRLSLSRVFLCIHDADQVVLVVFPCYTYYCIHDAELVSKYSSS
Sbjct: 61  LVIRITVFMMLVGSVSTRRLSLSRVFLCIHDADQVVLVVFPCYTYYCIHDAELVSKYSSS 120

Query: 121 FLVIHITVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSSLYVYYCIHDARQ 180
           FLVIHITVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSSLYVYYCIHDARQ
Sbjct: 121 FLVIHITVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSSLYVYYCIHDARQ 180

Query: 181 VDKFFVFPYYMHYFLRASHCIHDDGRVSSEFDELAAGSLPRVHGNFS 227
           VDKFFVFPYYMHYFLRASHCIHDDGRVSSEFDELAAGSLPRVHGNFS
Sbjct: 181 VDKFFVFPYYMHYFLRASHCIHDDGRVSSEFDELAAGSLPRVHGNFS 227

[Close]
BLAST of Csor.00g036630 vs. NCBI nr
Match: XP_022976008.1 (uncharacterized protein LOC111476538 [Cucurbita maxima])

HSP 1 Score: 134 bits (337), Expect = 4.74e-34
Identity = 118/280 (42.14%), Postives = 133/280 (47.50%), Query Frame = 0 

Query: 1   MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRIT------VFMMLVTSI- 60
           ML+ SVS   LSLLYV +     CIHDA  VGKYSSSFL++RIT      V MML+ S+ 
Sbjct: 2   MLIWSVSTLHLSLLYVYY-----CIHDAGQVGKYSSSFLIIRITFRELLTVLMMLIWSVS 61

Query: 61  -------------------GKYSLSFLVIRI------TVFMMLVGSVSTRRLSLSRVFLC 120
                              GKYS SFL+IRI      TVFMML+ SVST RLSL  V+ C
Sbjct: 62  TLRLSLLYVYYCIHDAGQVGKYSSSFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYYC 121

Query: 121 IHDADQV----------------VLVVFPC-------------YTYYCIHDAELVSKYSS 180
           IHD  QV                +L VF               Y YYCIHD   V KYSS
Sbjct: 122 IHDVGQVGKYSSSFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYYCIHDVGQVGKYSS 181

Query: 181 SFLVIHI------TVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSS----- 184
           SFL+I I      TVFMML+ SV    +   Y +Y      CIHDA   GKYSSS     
Sbjct: 182 SFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYY------CIHDAGQVGKYSSSFLIIR 241

[Close]
BLAST of Csor.00g036630 vs. ExPASy TrEMBL
Match: A0A6J1IKV0 (uncharacterized protein LOC111476538 OS=Cucurbita maxima OX=3661 GN=LOC111476538 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 2.29e-34
Identity = 118/280 (42.14%), Postives = 133/280 (47.50%), Query Frame = 0 

Query: 1   MLVGSVSISRLSLLYVSFSRAFLCIHDADLVGKYSSSFLVVRIT------VFMMLVTSI- 60
           ML+ SVS   LSLLYV +     CIHDA  VGKYSSSFL++RIT      V MML+ S+ 
Sbjct: 2   MLIWSVSTLHLSLLYVYY-----CIHDAGQVGKYSSSFLIIRITFRELLTVLMMLIWSVS 61

Query: 61  -------------------GKYSLSFLVIRI------TVFMMLVGSVSTRRLSLSRVFLC 120
                              GKYS SFL+IRI      TVFMML+ SVST RLSL  V+ C
Sbjct: 62  TLRLSLLYVYYCIHDAGQVGKYSSSFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYYC 121

Query: 121 IHDADQV----------------VLVVFPC-------------YTYYCIHDAELVSKYSS 180
           IHD  QV                +L VF               Y YYCIHD   V KYSS
Sbjct: 122 IHDVGQVGKYSSSFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYYCIHDVGQVGKYSS 181

Query: 181 SFLVIHI------TVFMMLVRSVGKFVVFPYYTHYFSRASHCIHDADLDGKYSSS----- 184
           SFL+I I      TVFMML+ SV    +   Y +Y      CIHDA   GKYSSS     
Sbjct: 182 SFLIIRIPFRELLTVFMMLIWSVSTLRLSLLYVYY------CIHDAGQVGKYSSSFLIIR 241

The following BLAST results are available for this feature:
BLAST of Csor.00g036630 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g036630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592110.13.36e-154100.00hypothetical protein SDJN03_14456, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022976008.14.74e-3442.14uncharacterized protein LOC111476538 [Cucurbita maxima][more]
BLAST of Csor.00g036630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IKV02.29e-3442.14uncharacterized protein LOC111476538 OS=Cucurbita maxima OX=3661 GN=LOC111476538... [more]
BLAST of Csor.00g036630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g036630.m01Csor.00g036630.m01mRNA