Csor.00g035580 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCTTCAAGGAATGTGGTGGGGCTGAAGGATGAGGAGAAGCTGAAGGAAGAGAACTCGACGGCTAAGAAGGCTAAATTTGAGAGGTTTCCATTGTCGAAGTGGGAGGTAGCGGCGGCTTTTGGCATCTTCCTTGTCTGCTCCACTGGCCTCGTTTGTGTGTATATGACGATGCCCTCTGCAGAATACCAGAGCGTTAAGATCCCACGAACGCTTTCGGATCTTCGGATGCTTAAGTATGTGTTTCTCTGTTCAGCCCTTTTCGTTTTAGAACATGTTACGATATTTCATTGCCTCCCTTCTTCTTGTGCTATATAGTATTTTTGAACTGATTGTTGATTTGTTGTGAATTTGGAAGAGGAAATGTAGATTGAGGGTTGTTGTTTTCTTTAATTCAAGTCTTTGATTGTCTTTGGAACATGAGAGGGGGTATGGAATTATGTTTGGAGTTCTGAATGATGAGGATAGTTTCTTGCTTACTTAGAATGGTTGAGGAACACTTCATGGGGTTTCATATCTCGGATTGAAGGATGAAGAACTCTTGGAATTGAAGAATTAGTTTGAGATTGCTTTTCATCGGTGCATATCATGGGTTAAATGTGTGAAAATGAGGTTAAAGGATTGAATATGACCGAACCTATCAACTTAAGCTTTTGGTTTTGGGCTAGTTTAACCTGGTATCAAAGTTAGGGGGTGAGATCTTACATCGGTTGGAGAGAGGAACGAAGTATTCCTTATAAGGGTGTGAAAACCTCTCCCTAGTAAACGCGTTTTAAAAACCTTGAGGAGAAACTCGAAAGGGAAAGTTTAAAGCGGCAATGTCTGCTAGTAGTGAGCTTGGGCTGTTACAAATGGTATCAGAGCTAGGTTATCGGGCGGTGTGCCAACGAGGACGTTGGGCCCTTAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGTGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTATTAGACGCATTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGGCAAAAGAGGACAATGTCTGCTAGCGGTGGGTCTAGGCTGTTACAAATGGTATTAGAGCTAGGTTATCGGGCGGTGTGCCAATTAGGACGTTGGGACCCCAAGGGGGTAGATTATGAGGTCCCACATCTGTTGGAGAGGTGAACAAAACATTCCTTATAAGGGTGTAGAAACCTCTCCCTAATAGACGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGGCAAAAGAGGACAATGTCTGCAATCGGTGGGCTTGGGCTGTTACAAATGGTATCGGAGCCAAGTTACCGGGGGGTGTGTCAACGAGGATGCTGGGCACCCAAGGGGGTGGATTATGAGATCTCACATCGGTTGGAGAGGAGAACGAAACATTCCTTAGAAGGGTGTGGATAAACCTCTCCCTAGTAGACGCATTTTAAAAACCTTGAGGAGAAGCCCGAAAGGAAAAGTTCAAAAAGGACAACATCTACTAGCGGTGGGCTTGGACTGCTACGTAGGGGTCCTAAACTTGAATCACCTAATGTCGTTTACCTCTCGATTAATATCAAAAAATGCTTATTGAGTTTAGTAGTTTAACAAAATGTTCCAGCAAATTATTGTTATCTGTCGCTATTTCGAGTTAGTACCCGAACATTATAATATTCTCCATTGTTATTCTGATTTGTATATCTGTTGAATTATACTCCAGGGATCTCTTTGCAAATTATGCCAAAGATCATCCAGCACAATTCATTCTAGGTTATTGCTCCACCTACATATTCATGCAAACGTTCATGATTCCTGGAACAATTTTCATGTCATTGCTGGCTGGAGCTCTATTTGGTGTTATCAGAGGCCTTCTATTAGTTGTCTTTAATGCAACAGCTGGTGCATCCTCTTGCTTTTTTCTCTCCAAGTTGGTTGGAAGACCTTTAGTTTACTGGGTGTGGCCCGAAAAGTTGAAATTGTTCCAGGCAGAGGTACTTATTTACTGTGAGTTTTGTTTAAATTCGATTCGGTGACGACTCTCTAGTCACATCTAATCTCATGTTGGTTTGAAATCTTGGCTTCGATTATCCAGATAGCGAAGCATCGAGAAAAGCTACTCAATTATATGCTCTTTCTAAGGATAACACCGACGTTACCGAACCTTTTTATCAACTTGGCTTCACCTATTGTTGACATCCCATTTCATGTGTTCTTCTTGGCTACTTTAATTGGCCTTGTTCCAGCATCCTATATCACTGTCCGGGTAAGTTTCTATCATTGTAGATTTAAATGTCTTGTTCATATTGGGATTTGTTTTCCGTTATGTAATGAAAATCTCTCAAGTCAGTTGTTCTTATATCGTTTTTATATTGCTTTCCTTGTAAATAATGTTGGAGAATACCTGAAATTTGAGTTTTCTTTGACACTTGAGATAAATGAATAGTTGAAATTTTAGTTTAGTGAATGCAGTGGATAAATGGCGGTTGTGTTGTGTCTGATGTTTTGGTTGATCTTATCCTTTATATAATTTGGTAGTTGAGAGGCATGACTCCTATCATACCTTGGATTATCTTGGATTTGTCTATATGTGAGGGTGAGATCCCACATCGATTGGAGAGGAGAATGAGTGTTAGTAAGGACGCTGAGCCTCAAAGGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGGGAACGAGTGCCAGCGAAGATGTTGGGTCTCGAAGGGGGATGAATTTTGAGATCCCACATCGATTGGAGAGGGGAACGAGTGCTAATGAGGGTGTTGGGTCTTGAACGGGGTGGATTGTGAGATCGCACATTGATTGGAGAGGAGAACGATATCGATTGGAAAGGGAAACGACATTGATTTGAAAGAGGAACGACATCGGTTGGAAAGGGGAACGAGTGCCAGTGAGGACACTAGGCCTCGAAGGAGAAATGATTGTGAGATTCCATATCGATTGGAGAGGGGAACGAGTGCCAACGAGGACGCTGGACCCTGAAAGGGGGTGGATTGTGCGATCCCACATCAATTGGAGAGAGGAACGACATCGATTGGAAAAGGGAACGAGTGTCAATGAGGACGCTAGGCCTCGAAGGGGAGTGGATTGTGAGATCCCATATCGATTGGAGAGGGGAATGAGTATCAGCGAGGACATTAGGCCTAGAAGGGGGGGAGGGGGAATTGTGAGATCCCACATCGATCGGAGAGGGTAACAAGTGCCAGCAAGAACGCTAGGCCTCGAAGGGGGTGGATTGTGAGAGCCCACATCGGTTGGTGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGGGAATCCAAAAGGGAAAGCCCAAAGAGAACAGTATTTGCTAGCAGTAGGCTTAGGCCATTAGGCCATTACAATAATGTTTATTTTGTTCTGTACGTTTATATGTGTGTGTACGTGTATATGTTATAATTATTTCTTCCCTCTACGAGTACCATATTTGGTGGAAATTTCCTCGACATTTGTTACGTTTTACGTCGCTTTTTTTTCTTTTTATCAACTTCTTGCAAGATCTTACATTTACTGTGCTATTTTTTCATCTTGAAGATAATTATCTAACTGTTAATTCATTATTTTACTATCATCAGGCTGGACTTGCACTCGGAGATCTGAAATCAGTCAAGGATTTATATGATTTCAAAACTTTGTCTGTGCTGTTCTTTATTGGTTTCATCTCCATTCTGCCTACACTTCTAAAAAGGAAACGAGTATACGAATAA ATGGCAGCTTCAAGGAATGTGGTGGGGCTGAAGGATGAGGAGAAGCTGAAGGAAGAGAACTCGACGGCTAAGAAGGCTAAATTTGAGAGGTTTCCATTGTCGAAGTGGGAGGTAGCGGCGGCTTTTGGCATCTTCCTTGTCTGCTCCACTGGCCTCGTTTGTGTGTATATGACGATGCCCTCTGCAGAATACCAGAGCGTTAAGATCCCACGAACGCTTTCGGATCTTCGGATGCTTAAGGATCTCTTTGCAAATTATGCCAAAGATCATCCAGCACAATTCATTCTAGGTTATTGCTCCACCTACATATTCATGCAAACGTTCATGATTCCTGGAACAATTTTCATGTCATTGCTGGCTGGAGCTCTATTTGGTGTTATCAGAGGCCTTCTATTAGTTGTCTTTAATGCAACAGCTGGTGCATCCTCTTGCTTTTTTCTCTCCAAGTTGGTTGGAAGACCTTTAGTTTACTGGGTGTGGCCCGAAAAGTTGAAATTGTTCCAGGCAGAGATAGCGAAGCATCGAGAAAAGCTACTCAATTATATGCTCTTTCTAAGGATAACACCGACGTTACCGAACCTTTTTATCAACTTGGCTTCACCTATTGTTGACATCCCATTTCATGTGTTCTTCTTGGCTACTTTAATTGGCCTTGTTCCAGCATCCTATATCACTGTCCGGGCTGGACTTGCACTCGGAGATCTGAAATCAGTCAAGGATTTATATGATTTCAAAACTTTGTCTGTGCTGTTCTTTATTGGTTTCATCTCCATTCTGCCTACACTTCTAAAAAGGAAACGAGTATACGAATAA ATGGCAGCTTCAAGGAATGTGGTGGGGCTGAAGGATGAGGAGAAGCTGAAGGAAGAGAACTCGACGGCTAAGAAGGCTAAATTTGAGAGGTTTCCATTGTCGAAGTGGGAGGTAGCGGCGGCTTTTGGCATCTTCCTTGTCTGCTCCACTGGCCTCGTTTGTGTGTATATGACGATGCCCTCTGCAGAATACCAGAGCGTTAAGATCCCACGAACGCTTTCGGATCTTCGGATGCTTAAGGATCTCTTTGCAAATTATGCCAAAGATCATCCAGCACAATTCATTCTAGGTTATTGCTCCACCTACATATTCATGCAAACGTTCATGATTCCTGGAACAATTTTCATGTCATTGCTGGCTGGAGCTCTATTTGGTGTTATCAGAGGCCTTCTATTAGTTGTCTTTAATGCAACAGCTGGTGCATCCTCTTGCTTTTTTCTCTCCAAGTTGGTTGGAAGACCTTTAGTTTACTGGGTGTGGCCCGAAAAGTTGAAATTGTTCCAGGCAGAGATAGCGAAGCATCGAGAAAAGCTACTCAATTATATGCTCTTTCTAAGGATAACACCGACGTTACCGAACCTTTTTATCAACTTGGCTTCACCTATTGTTGACATCCCATTTCATGTGTTCTTCTTGGCTACTTTAATTGGCCTTGTTCCAGCATCCTATATCACTGTCCGGGCTGGACTTGCACTCGGAGATCTGAAATCAGTCAAGGATTTATATGATTTCAAAACTTTGTCTGTGCTGTTCTTTATTGGTTTCATCTCCATTCTGCCTACACTTCTAAAAAGGAAACGAGTATACGAATAA MAASRNVVGLKDEEKLKEENSTAKKAKFERFPLSKWEVAAAFGIFLVCSTGLVCVYMTMPSAEYQSVKIPRTLSDLRMLKDLFANYAKDHPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLLLVVFNATAGASSCFFLSKLVGRPLVYWVWPEKLKLFQAEIAKHREKLLNYMLFLRITPTLPNLFINLASPIVDIPFHVFFLATLIGLVPASYITVRAGLALGDLKSVKDLYDFKTLSVLFFIGFISILPTLLKRKRVYE Homology
BLAST of Csor.00g035580 vs. ExPASy Swiss-Prot
Match: Q8L586 (Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1) HSP 1 Score: 402.9 bits (1034), Expect = 2.8e-111 Identity = 208/287 (72.47%), Postives = 239/287 (83.28%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy Swiss-Prot
Match: Q8MXN7 (Transmembrane protein 41 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275543 PE=3 SV=2) HSP 1 Score: 184.5 bits (467), Expect = 1.6e-45 Identity = 90/235 (38.30%), Postives = 152/235 (64.68%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy Swiss-Prot
Match: Q5ZIL6 (Transmembrane protein 41B OS=Gallus gallus OX=9031 GN=TMEM41B PE=2 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 8.2e-42 Identity = 89/226 (39.38%), Postives = 138/226 (61.06%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy Swiss-Prot
Match: Q5U4K5 (Transmembrane protein 41B OS=Xenopus laevis OX=8355 GN=tmem41b PE=2 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 5.3e-41 Identity = 86/226 (38.05%), Postives = 139/226 (61.50%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy Swiss-Prot
Match: Q5FVN2 (Transmembrane protein 41B OS=Rattus norvegicus OX=10116 GN=Tmem41b PE=2 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 9.0e-41 Identity = 87/227 (38.33%), Postives = 139/227 (61.23%), Query Frame = 0
BLAST of Csor.00g035580 vs. NCBI nr
Match: XP_022935860.1 (uncharacterized membrane protein At4g09580-like [Cucurbita moschata] >XP_023537153.1 uncharacterized membrane protein At4g09580-like [Cucurbita pepo subsp. pepo] >XP_023537162.1 uncharacterized membrane protein At4g09580-like [Cucurbita pepo subsp. pepo] >KAG6592213.1 putative membrane protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 518 bits (1334), Expect = 6.27e-185 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
BLAST of Csor.00g035580 vs. NCBI nr
Match: XP_022976934.1 (uncharacterized membrane protein At4g09580-like [Cucurbita maxima] >XP_022976935.1 uncharacterized membrane protein At4g09580-like [Cucurbita maxima]) HSP 1 Score: 514 bits (1323), Expect = 2.98e-183 Identity = 267/270 (98.89%), Postives = 268/270 (99.26%), Query Frame = 0
BLAST of Csor.00g035580 vs. NCBI nr
Match: KAG7025075.1 (putative membrane protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 509 bits (1311), Expect = 1.87e-181 Identity = 268/270 (99.26%), Postives = 268/270 (99.26%), Query Frame = 0
BLAST of Csor.00g035580 vs. NCBI nr
Match: XP_031745009.1 (uncharacterized membrane protein At4g09580 [Cucumis sativus] >KGN44374.1 hypothetical protein Csa_016650 [Cucumis sativus]) HSP 1 Score: 488 bits (1256), Expect = 4.85e-173 Identity = 254/271 (93.73%), Postives = 267/271 (98.52%), Query Frame = 0
BLAST of Csor.00g035580 vs. NCBI nr
Match: XP_008461958.1 (PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis melo] >XP_008461960.1 PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis melo] >XP_016902793.1 PREDICTED: uncharacterized membrane protein At4g09580-like [Cucumis melo] >KAA0048737.1 putative membrane protein [Cucumis melo var. makuwa] >TYK31598.1 putative membrane protein [Cucumis melo var. makuwa]) HSP 1 Score: 487 bits (1253), Expect = 1.39e-172 Identity = 253/271 (93.36%), Postives = 267/271 (98.52%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy TrEMBL
Match: A0A6J1FBV7 (uncharacterized membrane protein At4g09580-like OS=Cucurbita moschata OX=3662 GN=LOC111442641 PE=4 SV=1) HSP 1 Score: 518 bits (1334), Expect = 3.03e-185 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy TrEMBL
Match: A0A6J1IKV1 (uncharacterized membrane protein At4g09580-like OS=Cucurbita maxima OX=3661 GN=LOC111477156 PE=4 SV=1) HSP 1 Score: 514 bits (1323), Expect = 1.44e-183 Identity = 267/270 (98.89%), Postives = 268/270 (99.26%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy TrEMBL
Match: A0A0A0K623 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G273650 PE=4 SV=1) HSP 1 Score: 488 bits (1256), Expect = 2.35e-173 Identity = 254/271 (93.73%), Postives = 267/271 (98.52%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy TrEMBL
Match: A0A1S4E3J1 (uncharacterized membrane protein At4g09580-like OS=Cucumis melo OX=3656 GN=LOC103500434 PE=4 SV=1) HSP 1 Score: 487 bits (1253), Expect = 6.73e-173 Identity = 253/271 (93.36%), Postives = 267/271 (98.52%), Query Frame = 0
BLAST of Csor.00g035580 vs. ExPASy TrEMBL
Match: A0A5A7U377 (Putative membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G001030 PE=4 SV=1) HSP 1 Score: 487 bits (1253), Expect = 6.73e-173 Identity = 253/271 (93.36%), Postives = 267/271 (98.52%), Query Frame = 0
BLAST of Csor.00g035580 vs. TAIR 10
Match: AT1G71940.1 (SNARE associated Golgi protein family ) HSP 1 Score: 405.6 bits (1041), Expect = 3.1e-113 Identity = 193/253 (76.28%), Postives = 235/253 (92.89%), Query Frame = 0
BLAST of Csor.00g035580 vs. TAIR 10
Match: AT4G09580.1 (SNARE associated Golgi protein family ) HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-112 Identity = 208/287 (72.47%), Postives = 239/287 (83.28%), Query Frame = 0
BLAST of Csor.00g035580 vs. TAIR 10
Match: AT1G71940.2 (SNARE associated Golgi protein family ) HSP 1 Score: 369.8 bits (948), Expect = 1.9e-102 Identity = 174/229 (75.98%), Postives = 213/229 (93.01%), Query Frame = 0
BLAST of Csor.00g035580 vs. TAIR 10
Match: AT4G17790.1 (SNARE associated Golgi protein family ) HSP 1 Score: 309.3 bits (791), Expect = 3.0e-84 Identity = 145/237 (61.18%), Postives = 194/237 (81.86%), Query Frame = 0
BLAST of Csor.00g035580 vs. TAIR 10
Match: AT1G03260.1 (SNARE associated Golgi protein family ) HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06 Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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