Csor.00g029130 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g029130
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	polyadenylate-binding protein-interacting protein 7 isoform X3
Location	Csor_Chr01: 12496564 .. 12496914 (+)
RNA-Seq Expression	Csor.00g029130
Synteny	Csor.00g029130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGGATGGCATGCTTTTCTTCAAACCCAGCAGCACCGCCCCATCTAGAGGTGCTGCATATTTTGCTTCCACTGTCAGGAAATGGTTCTGCTGGTGATTCTATTGGCTCATGTAGAAGTTCTCATATTTTAGCTAGCAAGTACATTATGAAAGACACCTATAGTAAGAGGTTGCTACATCGAGGTTCAGCTCGGGCTGCTCCTATTTGGCTGGAAACTGCTTTGCCATTCGTCGTTCAATACTACCTCAAACATTATTTTCGATCTAAAGAATATGCAATAAACCATCAAACAAGAAGTCTAAGTCTAATCTCATACTTTACCTCGAGACAAGTTTGTGACCAATAA

mRNA sequence

ATGATAAGGATGGCATGCTTTTCTTCAAACCCAGCAGCACCGCCCCATCTAGAGGTGCTGCATATTTTGCTTCCACTGTCAGGAAATGGTTCTGCTGGTGATTCTATTGGCTCATGTAGAAGTTCTCATATTTTAGCTAGCAAGTACATTATGAAAGACACCTATAGTAAGAGGTTGCTACATCGAGGTTCAGCTCGGGCTGCTCCTATTTGGCTGGAAACTGCTTTGCCATTCGTCGTTCAATACTACCTCAAACATTATTTTCGATCTAAAGAATATGCAATAAACCATCAAACAAGAAGTCTAAGTCTAATCTCATACTTTACCTCGAGACAAGTTTGTGACCAATAA

Coding sequence (CDS)

ATGATAAGGATGGCATGCTTTTCTTCAAACCCAGCAGCACCGCCCCATCTAGAGGTGCTGCATATTTTGCTTCCACTGTCAGGAAATGGTTCTGCTGGTGATTCTATTGGCTCATGTAGAAGTTCTCATATTTTAGCTAGCAAGTACATTATGAAAGACACCTATAGTAAGAGGTTGCTACATCGAGGTTCAGCTCGGGCTGCTCCTATTTGGCTGGAAACTGCTTTGCCATTCGTCGTTCAATACTACCTCAAACATTATTTTCGATCTAAAGAATATGCAATAAACCATCAAACAAGAAGTCTAAGTCTAATCTCATACTTTACCTCGAGACAAGTTTGTGACCAATAA

Protein sequence

MIRMACFSSNPAAPPHLEVLHILLPLSGNGSAGDSIGSCRSSHILASKYIMKDTYSKRLLHRGSARAAPIWLETALPFVVQYYLKHYFRSKEYAINHQTRSLSLISYFTSRQVCDQ

Homology

[Close]

BLAST of Csor.00g029130 vs. NCBI nr
Match: KAG6608255.1 (hypothetical protein SDJN03_01597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 3.02e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MIRMACFSSNPAAPPHLEVLHILLPLSGNGSAGDSIGSCRSSHILASKYIMKDTYSKRLL 60
           MIRMACFSSNPAAPPHLEVLHILLPLSGNGSAGDSIGSCRSSHILASKYIMKDTYSKRLL
Sbjct: 1   MIRMACFSSNPAAPPHLEVLHILLPLSGNGSAGDSIGSCRSSHILASKYIMKDTYSKRLL 60

Query: 61  HRGSARAAPIWLETALPFVVQYYLKHYFRSKEYAINHQTRSLSLISYFTSRQVCDQ 116
           HRGSARAAPIWLETALPFVVQYYLKHYFRSKEYAINHQTRSLSLISYFTSRQVCDQ
Sbjct: 61  HRGSARAAPIWLETALPFVVQYYLKHYFRSKEYAINHQTRSLSLISYFTSRQVCDQ 116

[Close]

BLAST of Csor.00g029130 vs. NCBI nr
Match: XP_022939994.1 (polyadenylate-binding protein-interacting protein 7 isoform X3 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 3.65e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. NCBI nr
Match: XP_022981258.1 (polyadenylate-binding protein-interacting protein 7 isoform X3 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.65e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. NCBI nr
Match: XP_022939993.1 (polyadenylate-binding protein-interacting protein 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 3.67e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. NCBI nr
Match: XP_022981257.1 (polyadenylate-binding protein-interacting protein 7 isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.67e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL
Match: A0A6J1J1L3 (polyadenylate-binding protein-interacting protein 7 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111480447 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.77e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL
Match: A0A6J1FIS3 (polyadenylate-binding protein-interacting protein 7 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111445761 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.77e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL
Match: A0A6J1ITH5 (polyadenylate-binding protein-interacting protein 7 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480447 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.78e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL
Match: A0A6J1FN30 (polyadenylate-binding protein-interacting protein 7 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445761 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.78e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

[Close]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL
Match: A0A6J1FHA7 (polyadenylate-binding protein-interacting protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445761 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.85e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 27  SGNGSAGDSIGSCRSSHILASKYIM----KDTYSKRLLHRGSARAAPIWLET 74
           +GNGSA DSIGS RSSH LASKY      KDTYS+RLLHRGSARAAP+WLET
Sbjct: 357 NGNGSADDSIGSSRSSHTLASKYTTGGHGKDTYSERLLHRGSARAAPVWLET 408

The following BLAST results are available for this feature:

BLAST of Csor.00g029130 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g029130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608255.1	3.02e-78	100.00	hypothetical protein SDJN03_01597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939994.1	3.65e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X3 [Cucurbita moscha...	[more]
XP_022981258.1	3.65e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X3 [Cucurbita maxima...	[more]
XP_022939993.1	3.67e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X2 [Cucurbita moscha...	[more]
XP_022981257.1	3.67e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X2 [Cucurbita maxima...	[more]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1L3	1.77e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X3 OS=Cucurbita maxi...	[more]
A0A6J1FIS3	1.77e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X3 OS=Cucurbita mosc...	[more]
A0A6J1ITH5	1.78e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1FN30	1.78e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1FHA7	1.85e-14	76.92	polyadenylate-binding protein-interacting protein 7 isoform X1 OS=Cucurbita mosc...	[more]

BLAST of Csor.00g029130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g029130.m01	Csor.00g029130.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding