Csor.00g028990 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g028990
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	signal peptidase complex-like protein DTM1
Location	Csor_Chr01: 12430000 .. 12430849 (-)
RNA-Seq Expression	Csor.00g028990
Synteny	Csor.00g028990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTCGGTTACTTTTGATTCTTTTTTATCTTCGCGCTCTGTTTCTGTTGTTTGATTGATTCCAGAGCAAAAATTGTGCGAAAAAAATTAGGTTAAGTGATTTTGAAGCCTTTGCCAAATCAATTTCATAATCGTGTTTATTGAAACTTCGTTTGGTTTTTGAAAGTGATTTTTCGAACTCTTCATTTGAAGGCATGGAAACTGTTGCAGGTTTAAGATTTATCCAAAATTGTGCGAGAAAGTTAGGTTAAGTGATTTTGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATTGAAACTTCTTTTGGTTTTTGAAAGTGATTTTTCGAACTTTTCATTTGAATGCATTGAAACTGTTGCAGGTTTAGGATTTATCCAGAATTGTGCGAGAAAGTTAGGTTAAGTGATTATGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATGGAAACTTCTTTTGGTTTTTGAAACTGATTTTTCGAAATTTTCATTAGAATTCTTGGAAACTGTTGCAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAA

mRNA sequence

ATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAA

Coding sequence (CDS)

ATGGCCGAAGACGCCGCACTTAAATCCTCTCTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCAATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAA

Protein sequence

MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRWISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST

Homology

[Close]

BLAST of Csor.00g028990 vs. ExPASy Swiss-Prot
Match: Q7XI45 (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-21
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           M  D  L+ SLV LAAAVV+ G+ T S +K A TY  G+ AIAG+LLPDW FFDR++S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  ISPVTEEERESYRISTASRNP--RFRIYPIRLAVYAIVYSVALYKWWKFVST 111
           ++P+    R +   +    +   +F+ YP+R+A+   +Y   LYKWW +VS+
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

[Close]

BLAST of Csor.00g028990 vs. NCBI nr
Match: KAG6608241.1 (Signal peptidase complex-like protein DTM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216 bits (549), Expect = 1.66e-70
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 214 bits (545), Expect = 6.78e-70
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. NCBI nr
Match: KAG7037595.1 (Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214 bits (544), Expect = 9.63e-70
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212 bits (540), Expect = 3.93e-69
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 209 bits (531), Expect = 9.27e-68
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYA VYS ALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL
Match: A0A6J1FJI2 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446307 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 3.28e-70
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL
Match: A0A6J1J358 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480862 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 4.49e-68
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYA VYS ALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

[Close]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL
Match: A0A6J1DGG6 (signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC111020250 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.23e-56
Identity = 91/110 (82.73%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MAEDAALKSSLVFLAA VV+VGI+THSF  MAVTYLVGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVVVGIATHSFTNMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
            SPVT EERES RIST S+  RFRIYPIRL VY IVYS ALYKWWKF+S+
Sbjct: 61  TSPVTAEERESDRISTGSQLRRFRIYPIRLIVYTIVYSFALYKWWKFISS 110

[Close]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL
Match: A0A5A7TAS9 (Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006230 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 6.84e-54
Identity = 84/110 (76.36%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
            SPVTEEERESYR +T S+  RFRIYP+R+ VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL
Match: A0A1S3CQR6 (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 6.84e-54
Identity = 84/110 (76.36%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110
            SPVTEEERESYR +T S+  RFRIYP+R+ VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of Csor.00g028990 vs. TAIR 10
Match: AT1G34640.1 (peptidases )

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60
           M  +AAL+SS+V LA  +V+V + T S KK  VTY VG+  I GILLPDW FFDR+FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 110
             PVT EER S  ++  S   RFR+YP+R+ +Y  VY  A+Y+WW FVS
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVS 108

The following BLAST results are available for this feature:

BLAST of Csor.00g028990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XI45	4.2e-21	44.64	Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Csor.00g028990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608241.1	1.66e-70	100.00	Signal peptidase complex-like protein DTM1, partial [Cucurbita argyrosperma subs...	[more]
XP_022940831.1	6.78e-70	99.09	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata]	[more]
KAG7037595.1	9.63e-70	99.09	Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023524429.1	3.93e-69	98.18	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022981833.1	9.27e-68	96.36	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g028990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJI2	3.28e-70	99.09	signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1J358	4.49e-68	96.36	signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1DGG6	1.23e-56	82.73	signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7TAS9	6.84e-54	76.36	Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQR6	6.84e-54	76.36	uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=...	[more]

BLAST of Csor.00g028990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34640.1	1.2e-26	55.05	peptidases	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Signal peptidase complex subunit Spc1/SPCS1	PFAM	PF06645	SPC12	coord: 9..63 e-value: 7.1E-8 score: 32.4
IPR039955	Signal peptidase complex-like protein DTM1	PANTHER	PTHR38354	SIGNAL PEPTIDASE COMPLEX-LIKE PROTEIN DTM1	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g028990.m01	Csor.00g028990.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048658	anther wall tapetum development
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0005789	endoplasmic reticulum membrane