Csor.00g027980 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g027980
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptioncleavage and polyadenylation specificity factor subunit 3-II
LocationCsor_Chr20: 4801198 .. 4801574 (+)
RNA-Seq ExpressionCsor.00g027980
SyntenyCsor.00g027980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTATTGCTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTGTAGTCCTATATATTTTGGAAGCTTAGATGATACCCATGTCATGGATTGCATATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGACGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

mRNA sequence

ATGAACTATTGCTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGACGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Coding sequence (CDS)

ATGAACTATTGCTTCTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAACTCTATCTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATTTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAGGAAAGTTGCCCTTACCGAACTACAAACAGAATTGAAAATGAATCTGCTGCAGCATTCTATTGCTGTAGTTGGCTAGTCGCAGACGAAGTCCTCGCATGGCAAATCATTTCCATCTTGGAGAAGCATGATCTCAGTTCAACATGA

Protein sequence

MNYCFSWENKSMRLGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST
Homology
BLAST of Csor.00g027980 vs. ExPASy Swiss-Prot
Match: Q8GUU3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 19  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVA 78
           LS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W +A
Sbjct: 541 LSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNWSIA 600

Query: 79  DEVLAWQIISILE 92
           D  L W+II+ ++
Sbjct: 601 DLELGWEIINAIK 610

BLAST of Csor.00g027980 vs. NCBI nr
Match: KAG6571197.1 (Cleavage and polyadenylation specificity factor subunit 3-II, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 7.47e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MNYCFSWENKSMRLGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTN 60
          MNYCFSWENKSMRLGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTN
Sbjct: 1  MNYCFSWENKSMRLGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTN 60

Query: 61 RIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST 98
          RIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST
Sbjct: 61 RIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST 98

BLAST of Csor.00g027980 vs. NCBI nr
Match: XP_022944196.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucurbita moschata])

HSP 1 Score: 165 bits (418), Expect = 1.46e-45
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 563 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 622

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 623 SWLVADEVLAWQIISILEKHDLSST 647

BLAST of Csor.00g027980 vs. NCBI nr
Match: KAG7011001.1 (Cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165 bits (418), Expect = 1.78e-45
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 584 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 643

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 644 SWLVADEVLAWQIISILEKHDLSST 668

BLAST of Csor.00g027980 vs. NCBI nr
Match: XP_023513382.1 (cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (418), Expect = 1.91e-45
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 592 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 651

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 652 SWLVADEVLAWQIISILEKHDLSST 676

BLAST of Csor.00g027980 vs. NCBI nr
Match: XP_022944195.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita moschata])

HSP 1 Score: 165 bits (418), Expect = 1.91e-45
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 592 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 651

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 652 SWLVADEVLAWQIISILEKHDLSST 676

BLAST of Csor.00g027980 vs. ExPASy TrEMBL
Match: A0A6J1FTR8 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 7.06e-46
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 563 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 622

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 623 SWLVADEVLAWQIISILEKHDLSST 647

BLAST of Csor.00g027980 vs. ExPASy TrEMBL
Match: A0A6J1FYI7 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=3 SV=1)

HSP 1 Score: 165 bits (418), Expect = 9.27e-46
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 592 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 651

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLVADEVLAWQIISILEKHDLSST
Sbjct: 652 SWLVADEVLAWQIISILEKHDLSST 676

BLAST of Csor.00g027980 vs. ExPASy TrEMBL
Match: A0A6J1JG52 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484204 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 2.62e-45
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 563 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 622

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLV DEVLAWQIISILEKHDLSST
Sbjct: 623 SWLVTDEVLAWQIISILEKHDLSST 647

BLAST of Csor.00g027980 vs. ExPASy TrEMBL
Match: A0A6J1J7M0 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484204 PE=3 SV=1)

HSP 1 Score: 164 bits (414), Expect = 3.41e-45
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 73
           L L  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC
Sbjct: 592 LWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCC 651

Query: 74  SWLVADEVLAWQIISILEKHDLSST 98
           SWLV DEVLAWQIISILEKHDLSST
Sbjct: 652 SWLVTDEVLAWQIISILEKHDLSST 676

BLAST of Csor.00g027980 vs. ExPASy TrEMBL
Match: A0A5D3C3J3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00090 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 1.21e-39
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0

Query: 14  LGLLTLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAA-AFYC 73
           L L  LS KLS+ELSDRNVQN GEYLQVES TLSICSKE+CPYRTTNRIENES+A  F C
Sbjct: 196 LWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESSAMVFCC 255

Query: 74  CSWLVADEVLAWQIISILEKHDLSST 98
           CSWLVADE+LAW+IISILEKHDL ST
Sbjct: 256 CSWLVADEILAWKIISILEKHDLGST 281

BLAST of Csor.00g027980 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 19  LSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRTTNRIENESAAAFYCCSWLVA 78
           LS+K+   +S   +      LQV SF  S+C K+ C +R+++   + S A F CC+W +A
Sbjct: 541 LSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSS---SSSEAVFLCCNWSIA 600

Query: 79  DEVLAWQIISILE 92
           D  L W+II+ ++
Sbjct: 601 DLELGWEIINAIK 610

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8GUU31.2e-0635.62Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal... [more]
Match NameE-valueIdentityDescription
KAG6571197.17.47e-66100.00Cleavage and polyadenylation specificity factor subunit 3-II, partial [Cucurbita... [more]
XP_022944196.11.46e-4596.47cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucurbi... [more]
KAG7011001.11.78e-4596.47Cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita argyrosp... [more]
XP_023513382.11.91e-4596.47cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo sub... [more]
XP_022944195.11.91e-4596.47cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbi... [more]
Match NameE-valueIdentityDescription
A0A6J1FTR87.06e-4696.47cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucur... [more]
A0A6J1FYI79.27e-4696.47cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucur... [more]
A0A6J1JG522.62e-4595.29cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucur... [more]
A0A6J1J7M03.41e-4595.29cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucur... [more]
A0A5D3C3J31.21e-3982.56Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var... [more]
Match NameE-valueIdentityDescription
AT2G01730.18.4e-0835.62cleavage and polyadenylation specificity factor 73 kDa subunit-II [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g027980.m01Csor.00g027980.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0016180 snRNA processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus