Csor.00g027180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g027180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	GATA type zinc finger transcription factor family protein
Location	Csor_Chr04: 5913872 .. 5916897 (+)
RNA-Seq Expression	Csor.00g027180
Synteny	Csor.00g027180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACGGTGGAGTTTCGGTAGTACTGAAAAAGTTGAAGAAGTAGCACCGGGACGGAGTAAAGTTGAAGCAAGCAATGTGTGTCTTTCCGGCAAAGGTATTTTCACTTTTTCTCCTTTTTTTTCTTTTTTTTTTTTTCTCTCTATAAAGAATCGACGCTGTGAATAATCTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAACACATTCTCTGCATTTTGTTCCTTCTATCATTGGAGGTACCCATCTTCAATTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTTGGTTTGATCCTATTCTCCACTAGATTTTCAAGTGTTTTAGTTTAAGCTCGTCGATTTAATTTTCTGAGATTCTCAGATCATTTGCCTGCTTCTTGTTTTGTCTTCTGAATTTGATCTGGGTTTTTGCGTATTGGTTGTGTTTGATGAAATGACATCAGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGGTACATCACTTAAGCTTCGATGTACATGATTACGGAGCACTTTTTTGAGTCAGAATGTGAGAACTTTTCTAAAATGATTTGTTAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTAGTATGTTCCAAACTTGGTCGAATTTAGAAGACACTCTACATCATGGATCTTGTAGCTATTGCTTTTTACTAACATTTTCTGTACTTCTCTTTTTCTACAGCTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGGTAAATTTAAACCCAATGCTGCAATTAGTTGTGATTGAATTTATAAACAGCCTGCTCATACCGTAGCCTCTTGTTGGTTCCAGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAAAAGACATTAAAAAGATATTCAAATATTTAAAACCCTCTTAATCACATTAATAGTCAATTTTCACTCTCTATTTGAACTGTCTGTATATATATGTTGCACCGAATTATCTTTTTGCGGTCGTTTGAATTTGTTTTGCATACCATTGTTTCAACATTTACTTATCGACCTCTATAAGAAAGGGATATTCTTTAAAGCTACTGCATCTAAATGAGTTGGTTTTCTGAATGGCTTGAATGTGGCTCTTGTTTGAGACAATTAGTGAACTGATGATATATAAGCTTTGAGGAACTGTGGAAGTTGCATGTTCTTAGTTTTCTTTATCTAAGTATTTCCTGCTGACGTAGAAATGGTTCCATCTCAATTTTGAAGTAGTTTTGCTGGTATTGGCACTTTGTATGCATCAGTGCTACAGTTATTTTATCTGCCGGGCATTGCTTGTATGCAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTGCCTCTGCTTTCCCCCTTCCCCAGTGTGTTCTACTTTGTTCCTCACGATTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAGACAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCAATTTGCAGCTGTTAGTTTTGGGTTAGTGCAAGATAGATATGAAGTCATTCTGTATCCTGCTGAATTATTCTGAGTTTTACGTTGACCAGTACTTCAATTGGTCTAGAAAAGAGTTTCACTTTCTTTCATCTTGATATCAGTTGGAAATGACACAAATCGTAGGCTTCATTACTATCTTTTACATGTTCTTCTGGGCGTCAATGTGAATACTGGAGGACCTGGCTACCTTGCTCCATGAAGAATGGTAAAAACCAATAGTTCATTTTTTGTATTTTTAGTTCAACAATGGTAGGGTGGAGATTGAACCATCATTTTTTGAGATCGTAATTGCAAATTATAAGCTAAGTTTTTAATAATTTAAATTAAAAAAAAAAAAGTTTTTAATGGCTTCTTGAAAGGTTACAGCCTGAAGAAGCTGTTATAATAGGGGTGGAAGGACCAGTTAGCTTAACCTTGGCCATGAGGTGTATCTCAACTCTTACAAGGCAACCCTCTAGCAAACCAGGTGACGATTAGCATTGTCTTAAGATCTTCCTATGGTGGTTGAACACAGAACTGAAGAGATGGGTTATATAGGATACTACTTTGACTCCTAAGATCGAAGAAGATGAAGCTGCAGCAGACGCGATTAGCAGACCTGAAACATCTCCCAAGCATACAACAAAGGCAAAACCTCAAGCAGACCTGAAGCCAAAAGTCAAATCTGACCCTGAATCAGTGGTGAAGATTGAAGAGTCGGGATTGGTTCCATTCCATCCAAATCCTCTGAGTATGGAAGGAGAAATTCAAATGACAAATTTATCTGTTTCTATATTTTCTTCCAAACAAGAAATATTACCCTCCAACAAAGTTCAGAGTAACTCGGAATTAACAAAATAG

mRNA sequence

ATGCCGACGGTGGAGTTTCGATCTTCTTCGTTCAGCATTTTTGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGATACTACTTTGACTCCTAAGATCGAAGAAGATGAAGCTGCAGCAGACGCGATTAGCAGACCTGAAACATCTCCCAAGCATACAACAAAGGCAAAACCTCAAGCAGACCTGAAGCCAAAAGTCAAATCTGACCCTGAATCAGTGGTGAAGATTGAAGAGTCGGGATTGGTTCCATTCCATCCAAATCCTCTGAGTATGGAAGGAGAAATTCAAATGACAAATTTATCTGTTTCTATATTTTCTTCCAAACAAGAAATATTACCCTCCAACAAAGTTCAGAGTAACTCGGAATTAACAAAATAG

Coding sequence (CDS)

ATGCCGACGGTGGAGTTTCGATCTTCTTCGTTCAGCATTTTTGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGATACTACTTTGACTCCTAAGATCGAAGAAGATGAAGCTGCAGCAGACGCGATTAGCAGACCTGAAACATCTCCCAAGCATACAACAAAGGCAAAACCTCAAGCAGACCTGAAGCCAAAAGTCAAATCTGACCCTGAATCAGTGGTGAAGATTGAAGAGTCGGGATTGGTTCCATTCCATCCAAATCCTCTGAGTATGGAAGGAGAAATTCAAATGACAAATTTATCTGTTTCTATATTTTCTTCCAAACAAGAAATATTACCCTCCAACAAAGTTCAGAGTAACTCGGAATTAACAAAATAG

Protein sequence

MPTVEFRSSSFSIFGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSKDTTLTPKIEEDEAAADAISRPETSPKHTTKAKPQADLKPKVKSDPESVVKIEESGLVPFHPNPLSMEGEIQMTNLSVSIFSSKQEILPSNKVQSNSELTK

Homology

[Close]

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 3.0e-86
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-85
Identity = 145/187 (77.54%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK+CFKCSHC   L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKS-SEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLE 167
           HFEQLFKE+G+FSKNF S AK  ++KPTPEL R+PS+ A MFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 168 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALM 227
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 228 KRQVATS 234
           KR  A +
Sbjct: 181 KRATAAA 187

[Close]

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-72
Identity = 132/224 (58.93%), Postives = 168/224 (75.00%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GT  KCKAC+KTVY +D L+ +G  +HKSCF+C+HC GTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+GN+SKNF   A  +EKP   LTR+PSK +S FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A   
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 228 RQVAT-------SDPDTSKDTTLTPKIEEDEAAADAISRPETSP 265
           R+ A+       SD     DT   P+ +ED+AA +A    E  P
Sbjct: 181 RRSASSGGASPPSDDHKPDDTASIPEAKEDDAAPEAAGEEEPEP 222

[Close]

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-67
Identity = 118/205 (57.56%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GT  KC  C+KTVY VD LS +G+ +HKSCF+C+HC GTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+GNFSKNF    +  +   PELTR+PSK +S+F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF----QPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           + +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H++++A  +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 228 RQVATSDPDTSKDTTLTPKIEEDEA 253
           R        T+   TL P+  ED A
Sbjct: 181 R--------TASGNTLPPEPTEDVA 193

[Close]

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.2e-67
Identity = 121/207 (58.45%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 49  SFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPH 108
           +F GT  KCKAC+KTVY +D ++ +G+ +HKSCF+CSHCNGTL + NYSSM+GVLYCK H
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 109 FEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKV 168
           FEQLFKE+GNFSKNF  TA  +EK + + T++P++ +S FSGTQ+KCA C KT YPLEK+
Sbjct: 63  FEQLFKESGNFSKNF-QTAGKTEK-SNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKM 122

Query: 169 TVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSAL-MK 228
           T+E ++YHK+CF+C+H GC L+ S+YAALDG+LYCK HFSQLF EKG+YNH++++A   +
Sbjct: 123 TMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 182

Query: 229 RQVATSDPDTSKDTTLTPKIEEDEAAA 255
           R  A  D    K+    P  EE   AA
Sbjct: 183 RSTAEEDKTEPKEDEANPTEEETSDAA 207

[Close]

BLAST of Csor.00g027180 vs. NCBI nr
Match: KAG6600951.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 681 bits (1756), Expect = 6.21e-247
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0


Query: 1   MPTVEFRSSSFSIFGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKAC 60
           MPTVEFRSSSFSIFGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKAC
Sbjct: 1   MPTVEFRSSSFSIFGEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKAC 60

Query: 61  EKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFS 120
           EKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFS
Sbjct: 61  EKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFS 120

Query: 121 KNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCF 180
           KNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCF
Sbjct: 121 KNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCF 180

Query: 181 KCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSKD 240
           KCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSKD
Sbjct: 181 KCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSKD 240

Query: 241 TTLTPKIEEDEAAADAISRPETSPKHTTKAKPQADLKPKVKSDPESVVKIEESGLVPFHP 300
           TTLTPKIEEDEAAADAISRPETSPKHTTKAKPQADLKPKVKSDPESVVKIEESGLVPFHP
Sbjct: 241 TTLTPKIEEDEAAADAISRPETSPKHTTKAKPQADLKPKVKSDPESVVKIEESGLVPFHP 300

Query: 301 NPLSMEGEIQMTNLSVSIFSSKQEILPSNKVQSNSELTK 339
           NPLSMEGEIQMTNLSVSIFSSKQEILPSNKVQSNSELTK
Sbjct: 301 NPLSMEGEIQMTNLSVSIFSSKQEILPSNKVQSNSELTK 339

[Close]

BLAST of Csor.00g027180 vs. NCBI nr
Match: KAG7031583.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469 bits (1208), Expect = 3.28e-165
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 15  GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG 74
           GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG
Sbjct: 4   GEGSLFDWDSLVALNWRRFWLVETSQIYSKALAMSFIGTQQKCKACEKTVYPVDQLSADG 63

Query: 75  VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT 134
           VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT
Sbjct: 64  VAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPT 123

Query: 135 PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY 194
           PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY
Sbjct: 124 PELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNY 183

Query: 195 AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 239
           AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK
Sbjct: 184 AALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSK 228

[Close]

BLAST of Csor.00g027180 vs. NCBI nr
Match: XP_022957291.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM domain-containing protein WLIM2b [Cucurbita moschata])

HSP 1 Score: 400 bits (1027), Expect = 3.58e-138
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 228 RQVATSDPDTSK 239
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]

BLAST of Csor.00g027180 vs. NCBI nr
Match: XP_023549296.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.1 LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1020), Expect = 3.48e-137
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 228 RQVATSDPDT 237
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Csor.00g027180 vs. NCBI nr
Match: XP_022987406.1 (LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM domain-containing protein WLIM2b [Cucurbita maxima])

HSP 1 Score: 395 bits (1014), Expect = 3.41e-136
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 228 RQVATSDPDTSK 239
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 400 bits (1027), Expect = 1.73e-138
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 228 RQVATSDPDTSK 239
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL
Match: A0A6J1JGT3 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962 PE=4 SV=1)

HSP 1 Score: 395 bits (1014), Expect = 1.65e-136
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 228 RQVATSDPDTSK 239
           RQVATSDPDTSK
Sbjct: 181 RQVATSDPDTSK 192

[Close]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 386 bits (991), Expect = 5.21e-133
Identity = 183/192 (95.31%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 228 RQVATSDPDTSK 239
           RQ ATSDPD SK
Sbjct: 181 RQAATSDPDPSK 192

[Close]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 380 bits (977), Expect = 7.02e-131
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE GNFSKNFLS AKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 228 RQVATSDPD 236
           RQ ATS PD
Sbjct: 181 RQAATSVPD 189

[Close]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 380 bits (976), Expect = 9.97e-131
Identity = 180/192 (93.75%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTRSPS+AASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL+GILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 228 RQVATSDPDTSK 239
           RQ ATSD D SK
Sbjct: 181 RQAATSDSDPSK 192

[Close]

BLAST of Csor.00g027180 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Csor.00g027180 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Csor.00g027180 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Csor.00g027180 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Csor.00g027180 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 228 RQVATS 234
           R  A +
Sbjct: 181 RSAAAA 186

The following BLAST results are available for this feature:

BLAST of Csor.00g027180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	3.0e-86	79.03	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	2.6e-85	77.54	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	1.5e-72	58.93	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	1.9e-67	57.56	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q500W4	3.2e-67	58.45	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]

BLAST of Csor.00g027180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600951.1	6.21e-247	100.00	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7031583.1	3.28e-165	100.00	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022957291.1	3.58e-138	99.48	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM do...	[more]
XP_023549296.1	3.48e-137	99.47	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303....	[more]
XP_022987406.1	3.41e-136	98.96	LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM doma...	[more]

BLAST of Csor.00g027180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYT7	1.73e-138	99.48	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1JGT3	1.65e-136	98.96	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962...	[more]
A0A0A0KQF5	5.21e-133	95.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A6J1DT64	7.02e-131	95.77	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A1S3CIM8	9.97e-131	93.75	LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141...	[more]

BLAST of Csor.00g027180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	2.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	2.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	2.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	2.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	2.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 154..206 e-value: 4.7E-12 score: 56.0 coord: 56..108 e-value: 4.8E-13 score: 59.3
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 57..112 e-value: 3.1E-11 score: 43.3 coord: 155..210 e-value: 3.5E-10 score: 39.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 57..91
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 153..213 score: 12.5434
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 55..115 score: 13.573
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 149..219 e-value: 3.1E-19 score: 70.9 coord: 51..121 e-value: 2.2E-20 score: 74.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..287
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 48..233
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 48..233
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 53..115 e-value: 2.20481E-44 score: 144.53
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 155..215 e-value: 9.89113E-39 score: 129.898
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 181..220
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 147..180
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 83..123
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 50..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g027180.m01	Csor.00g027180.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding