Csor.00g024700 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g024700
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 4604864 .. 4607962 (+)
RNA-Seq Expression	Csor.00g024700
Synteny	Csor.00g024700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGAATGAAGAGAAGTGCAGCTGGCCAACAATTTGTAGCGGAGTAACAGATGGAATGACGCAAGAGAGGGTGGGAAAATGGAAGACGACTTTTACTGTCATTAATGGAATTTATATCCTCTGCAATTTGTGGTACTTGTTCTTAGTTGTAGGCTAGTGGGGATCGAGGCCTTTTTGCAACATTTTCTCTTTTGTTTTTGTTTAAATTCTAAGTTAATTAATAAAAAAATTAGTAAATTTTGTATTTTATTTAGAAAATAACTCTTAATTTTTTTTTTTTCAACATTAATAATATGCTTGAATTTCTAAAAAATTTAGAAAATAAGTATACTTTATTTTAAACTAACTTTAAAATTTTTAAAAGTATTTTAATACCCGTAAATTTTTAAATGGTCCTTTCACCTTTTAAAAAAATTCAAAGTAACTAAGGTTAGGATCATTTCTATGTTGGTTCGGTCCATTGTAATACTCTGTCTCAATACTACATGTTCTAGGAAAATCATCTCCAGAAGCCAAAACTCGTAATTCGATAACTTGACATGTAACTAGTTCACTCTCAACACTGTTAAAACTCTTTTTAGATGATCCTTGTGTGTGACTAATCTCCATTATGGAGTACACCAGCATGTCGTTAATAGAGACAATGATAAAAGTATTGATAAAGTCCTTAAACACTCGTTCATTGGTTTCATAAACACTCGAAAGCTTTGGTTAGGACGAAGGACATAACAATAAGTCTCGTAGTAGCCGTATTGGCTCCTAGAAGTCGTATTTTATATGTTTTTCTCCCAAATATTCATCAAAAGGAAACTTGAACCCTTTGTGACCCTTGTTGTCCTTGTTGTCTCGCTTTAGTTATCCTAGTAGTTCCTTCTTGTGTGACCAATTCGAGCCTATACCATAGCGTGACACTTTGTAACATTGCTCTTAAGGGTATTGTTACTCATATGAATTTTGTACAGGCATCTCGAGAATCGTTAATCCTTTCACGAGTCTTATGGTATTCACTTAGATTGGCTCTTGTAATTTCTTGTGTTGGTCCATTCGGCCATCCTTTGATACTTATATATCATGATGGCTCACTTGAACATCTCAACCCGTCGAGTGTCTTTTCGGGATCCTAGGGAACTCTAAGTATTGGTTTTGGTGGCTAGTTTTTTATTAAGCTCTAAGATGCTTCCTTAACATGTAAGTGTCATGCTTGGTGCCTATGATTTGGAATCTAAATTTGACACTTAGCAGCCTCATCAATTTCTACATCTCCTGTGACATGACTACGCCATCCACTGGCCATAACTTGTTTGCTAGTCATTAACACGGCCACCGCTGAGGTCGATACTATAATCAAGATATCTAGGTTCCACCTTTGCCTATGCATGCTTCACCAACATTCCACACACAATCATGCTCATGGAACCTAATTTACCATACTTTAAATTCATATGACCTAAAACGATGGTAGATTCCCATCTTAATGGCATGTGGTCCATCATTTTTCCAAAAAGTAATAAAGTGGGTCACAACTTTACCCTATTGATGTTGTACTTAACCCAAAGGTACACTAGCCTGTTATGACGATTCCACGACCTTAATTTGGTGGACACATGTGCCCAATCTTGAAGGTGGCTTATAGTGTGGTCGTATAATCTTAACAACTTTGTGCTAGTGCTAAACTTGAATCTCTCCTACGATATTAATTAACAAATTTATCGTATGTTAGGTGATTCTCCACTGAGAATATCCTTCACTCCTTGCTCATAGGACTCCTAGAAATTCATAAACTTGAATATAGTATTTGTAGCTTCCAACCAAAACCTTCATAGCCATGATTTTCACCGCACAATACTTTAGGTTGGTGGTTCATATATCTTGTAATGTCACAGTAATTTGAAAGTTATAAGTGGCAACGATACGCTTGCAGGGTGCACAATTAAAATTCTGTCTTAAAATGCACAATCCTTCTATTCGCAGCGTAGGGTCTAACGGAAAAAAAATAGTGTATGTAAAGTGAAAAATCAAACTAGACCCCAAATAAAAAAGTTATGACTCAATAGAGTTTAATATTAATTTTATAATAGTTTTTTTATAAAAGTTTAATATTACTTTTTATAATTGTTGCATGCCTCGCGAGCCGGGCTGATAAAGATGAGGCCTTTTGGCGAAGGCAAGTCAATTTTTTTTGAGTAGAAACGTGTTAGAAATTTGAATATAAAATTATAATTTTTGGTGATTTGGAAGGACGTGACAATTACTTATAACACTTTTTAATTAAGTCGAAAGAATAATTTTCATGGCATCTAGTAATTTAATTCTAATGAATATAGTCAATCCGGAAAGAATAAAAATATTTTTGAATTAATAAAGAATTCAATGTAATTATGGACTAATTAAGAATATCTCGAGTATTTTTAAAAATATTTATTCCACAAGGTATGGACTAGCCGGTAACATTTTTATAAATAAATAAAAATAGAGATTTGTTAGATATTTGAGGCAATGGTTAATGAAATTTATGTAAATACTGTCATACTCGCGCCTTATTAGATAGTCTCGCCTGATCTTCCCTCGCGCGCCTGGCTTCTGAAGTTCCGATTGAACTGACACAACTTCTTCGCTCCGTTGCATCGGGTGCTCTTCTTCGCAGGTCAGTTCTCCTTTATGGTATTCTTTGTTCTTCCTTCTCCCATTGCCATGGCTTGATTCTGTTCTTCCTTATTTGAATCCACTTCATTTCAATCCCCGTTGATGTATCAATCGTCATTGCTGTAGTTTCCGTTGCTTTGCTGTTGCTTTTGCTGTCTAGGGTTTTCCCTCTTGAGTATCATCCTATTTTCTAACGCGTACGGATGATGACGTTGCGGTCTGGTTTTGTGTCTTAGGGTTTCTTTCTTAACGTGCACTGTCATTTCGGATATCACTTTCAAGAGGCCGTTAACTGGTGCCAGTTTCAATCTGGAGAATTTTATTACTAACCAATTTAAATATACATATTGGCGTTCTTTGTGACCGTGCTGATCTTTGTTTGCTATGTTGCGACTTCTCAGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAA

mRNA sequence

ATGGAAGAGAATGAAGAGAAGTGCAGCTGGCCAACAATTTGTAGCGGAGTAACAGATGGAATGACGCAAGAGAGGGTGGGAAAATGGAAGACGACTTTTACTGTCATTAATGGAATTTATATCCTCTGCAATTTGTGGGTTTCTTTCTTAACGTGCACTGTCATTTCGGATATCACTTTCAAGAGGCCGTTAACTGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAA

Coding sequence (CDS)

ATGGAAGAGAATGAAGAGAAGTGCAGCTGGCCAACAATTTGTAGCGGAGTAACAGATGGAATGACGCAAGAGAGGGTGGGAAAATGGAAGACGACTTTTACTGTCATTAATGGAATTTATATCCTCTGCAATTTGTGGGTTTCTTTCTTAACGTGCACTGTCATTTCGGATATCACTTTCAAGAGGCCGTTAACTGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAA

Protein sequence

MEENEEKCSWPTICSGVTDGMTQERVGKWKTTFTVINGIYILCNLWVSFLTCTVISDITFKRPLTDHSHSTVLTLAVIFPA

Homology

[Close]

BLAST of Csor.00g024700 vs. NCBI nr
Match: KAG6600705.1 (hypothetical protein SDJN03_05938, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 2.04e-53
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEENEEKCSWPTICSGVTDGMTQERVGKWKTTFTVINGIYILCNLWVSFLTCTVISDITF 60
          MEENEEKCSWPTICSGVTDGMTQERVGKWKTTFTVINGIYILCNLWVSFLTCTVISDITF
Sbjct: 1  MEENEEKCSWPTICSGVTDGMTQERVGKWKTTFTVINGIYILCNLWVSFLTCTVISDITF 60

Query: 61 KRPLTDHSHSTVLTLAVIFPA 81
          KRPLTDHSHSTVLTLAVIFPA
Sbjct: 61 KRPLTDHSHSTVLTLAVIFPA 81

The following BLAST results are available for this feature:

BLAST of Csor.00g024700 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g024700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600705.1	2.04e-53	100.00	hypothetical protein SDJN03_05938, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g024700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g024700 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g024700.m01	Csor.00g024700.m01	mRNA