Csor.00g022460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g022460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	VQ domain-containing protein
Location	Csor_Chr04: 3349413 .. 3349643 (+)
RNA-Seq Expression	Csor.00g022460
Synteny	Csor.00g022460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTGGCGAAGCTCATTCGACCAGGGTTGTCATTATCGACACCAAGTATGTCCACACAGACGCCAAGAGCTTCAAGACCGTGGTGCAGAAGCTCACCGGGAAAGATCCAGCGGCCGAGGAGAACCGTCAAACGGGCGGCGGTTGGAGCTCCGGTCTTGTGATCACAGATTCTTCGTTCAAGAAGTTCCAAACAGAGCTGCGAGAGATGCCAACAATTCATCGATGA

mRNA sequence

ATGTCAGGTGGCGAAGCTCATTCGACCAGGGTTGTCATTATCGACACCAAGTATGTCCACACAGACGCCAAGAGCTTCAAGACCGTGGTGCAGAAGCTCACCGGGAAAGATCCAGCGGCCGAGGAGAACCGTCAAACGGGCGGCGGTTGGAGCTCCGGTCTTGTGATCACAGATTCTTCGTTCAAGAAGTTCCAAACAGAGCTGCGAGAGATGCCAACAATTCATCGATGA

Coding sequence (CDS)

ATGTCAGGTGGCGAAGCTCATTCGACCAGGGTTGTCATTATCGACACCAAGTATGTCCACACAGACGCCAAGAGCTTCAAGACCGTGGTGCAGAAGCTCACCGGGAAAGATCCAGCGGCCGAGGAGAACCGTCAAACGGGCGGCGGTTGGAGCTCCGGTCTTGTGATCACAGATTCTTCGTTCAAGAAGTTCCAAACAGAGCTGCGAGAGATGCCAACAATTCATCGATGA

Protein sequence

MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSSFKKFQTELREMPTIHR

Homology

[Close]

BLAST of Csor.00g022460 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-05
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 10  RVVIIDTKYVHTDAKSFKTVVQKLTGKD----------PAA-------------EENRQT 69
           +VV I+T+YV TDA+SFKTVVQ+LTGK+          P+A             E+ RQ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 70  -GGGWSSGLVITDSSFKKFQTELREMPTIHR 77
            GGG   G + T + F +   E+  M  +++
Sbjct: 73  HGGGGGGGRMGTTTEFDRLFKEMPHMEELYK 103

[Close]

BLAST of Csor.00g022460 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-04
Identity = 28/86 (32.56%), Postives = 42/86 (48.84%), Query Frame = 0


Query: 2  SGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSSF 61
          +G  +   +VV I+T+YV TDA+SFKT+VQ+LTGK+    +      G   G   +   F
Sbjct: 3  AGVRSEPMKVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRF 62

Query: 62 -------------KKFQTELREMPTI 75
                        +F +  REMP +
Sbjct: 63 CGVGKEAERGVETTEFDSFFREMPPV 88

[Close]

BLAST of Csor.00g022460 vs. NCBI nr
Match: KAG6600481.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (396), Expect = 3.14e-48
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS 60

Query: 61 FKKFQTELREMPTIHR 76
          FKKFQTELREMPTIHR
Sbjct: 61 FKKFQTELREMPTIHR 76

[Close]

BLAST of Csor.00g022460 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 153 bits (386), Expect = 1.06e-46
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPA EENRQT GGWSSGLVITDSS
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAVEENRQTSGGWSSGLVITDSS 60

Query: 61 FKKFQTELREMPTIHR 76
          FKKFQTELREMPTIHR
Sbjct: 61 FKKFQTELREMPTIHR 76

[Close]

BLAST of Csor.00g022460 vs. NCBI nr
Match: XP_023543644.1 (VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148 bits (374), Expect = 7.16e-45
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP AEE RQTG GWSS LVITDSS
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPTAEETRQTGAGWSSNLVITDSS 60

Query: 61 FKKFQTELREMPTIHR 76
          FKKFQTELREMPTIHR
Sbjct: 61 FKKFQTELREMPTIHR 76

[Close]

BLAST of Csor.00g022460 vs. NCBI nr
Match: XP_022142787.1 (VQ motif-containing protein 10-like [Momordica charantia])

HSP 1 Score: 105 bits (262), Expect = 9.03e-28
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA--EENRQTGGGWSSGLVIT- 60
          M+GGEA STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA  EE+R++GGG S    +T 
Sbjct: 1  MAGGEAPSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTR 60

Query: 61 DSSFKKFQTELREM 71
          DSSFK+FQ  LREM
Sbjct: 61 DSSFKEFQRVLREM 74

[Close]

BLAST of Csor.00g022460 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.80e-25
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEE-NRQTGGGWSSGLVITDSSFKKF 65
          AHSTRVVIIDTKYV TDAKSFKTVVQKLTGKD  AEE NR TGG  +SGL + DSSFK+F
Sbjct: 4  AHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVAEEENRHTGGTRNSGL-LRDSSFKEF 63

Query: 66 QTELREMPTI 74
          Q  LREMP I
Sbjct: 64 QRVLREMPRI 72

[Close]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.11e-47
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSS 60
          MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPA EENRQT GGWSSGLVITDSS
Sbjct: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAVEENRQTSGGWSSGLVITDSS 60

Query: 61 FKKFQTELREMPTIHR 76
          FKKFQTELREMPTIHR
Sbjct: 61 FKKFQTELREMPTIHR 76

[Close]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.37e-28
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA--EENRQTGGGWSSGLVIT- 60
          M+GGEA STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA  EE+R++GGG S    +T 
Sbjct: 1  MAGGEAPSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTR 60

Query: 61 DSSFKKFQTELREM 71
          DSSFK+FQ  LREM
Sbjct: 61 DSSFKEFQRVLREM 74

[Close]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.11e-22
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP----AAEENRQTGGGWSSGLVITDSSFK 66
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKD     A E  RQTG   +S L + DSSFK
Sbjct: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSL-LRDSSFK 64

Query: 67 KFQTELREMPTI 74
          +FQ  LREMP I
Sbjct: 65 EFQRVLREMPRI 75

[Close]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.53e-21
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAA----EENRQTGGGWSSGLVITDSSFK 66
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKD       E  RQTG   +S L + DSSFK
Sbjct: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSL-LRDSSFK 64

Query: 67 KFQTELREMPTI 74
          +FQ  LREMP I
Sbjct: 65 EFQRVLREMPRI 75

[Close]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL
Match: A0A0L9UJH2 (VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.77e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 10 RVVIIDTKYVHTDAKSFKTVVQKLTGKD-----PAAEENRQTGGGWSSGLVITDSSFKKF 69
          +VVII+T+YV TDA SFK+VVQKLTGKD     P A+ NR   GG     ++ D SFK+F
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 70 QTELREMPTIH 75
             LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Csor.00g022460 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 10  RVVIIDTKYVHTDAKSFKTVVQKLTGKD----------PAA-------------EENRQT 69
           +VV I+T+YV TDA+SFKTVVQ+LTGK+          P+A             E+ RQ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 70  -GGGWSSGLVITDSSFKKFQTELREMPTIHR 77
            GGG   G + T + F +   E+  M  +++
Sbjct: 73  HGGGGGGGRMGTTTEFDRLFKEMPHMEELYK 103

[Close]

BLAST of Csor.00g022460 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 28/86 (32.56%), Postives = 42/86 (48.84%), Query Frame = 0


Query: 2  SGGEAHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAEENRQTGGGWSSGLVITDSSF 61
          +G  +   +VV I+T+YV TDA+SFKT+VQ+LTGK+    +      G   G   +   F
Sbjct: 3  AGVRSEPMKVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRF 62

Query: 62 -------------KKFQTELREMPTI 75
                        +F +  REMP +
Sbjct: 63 CGVGKEAERGVETTEFDSFFREMPPV 88

The following BLAST results are available for this feature:

BLAST of Csor.00g022460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	5.0e-05	36.26	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	1.9e-04	32.56	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of Csor.00g022460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600481.1	3.14e-48	100.00	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022942030.1	1.06e-46	97.37	VQ motif-containing protein 1 [Cucurbita moschata]	[more]
XP_023543644.1	7.16e-45	94.74	VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022142787.1	9.03e-28	77.03	VQ motif-containing protein 10-like [Momordica charantia]	[more]
XP_038889427.1	1.80e-25	78.57	VQ motif-containing protein 1-like [Benincasa hispida]	[more]

BLAST of Csor.00g022460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVF7	5.11e-47	97.37	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A6J1CNV7	4.37e-28	77.03	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A0A0KXJ0	6.11e-22	70.83	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A5A7VBD1	3.53e-21	69.44	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0L9UJH2	1.77e-15	54.93	VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g0311...	[more]

BLAST of Csor.00g022460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	3.6e-06	36.26	VQ motif-containing protein	[more]
AT1G17147.1	1.4e-05	32.56	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 13..39 e-value: 7.7E-12 score: 44.5
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..72
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g022460.m01	Csor.00g022460.m01	mRNA