Csor.00g017440 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGGTAAATTTATTTTAGTTCCAATATTATAATGGAGGATTCATCACCGTCCTCATATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAAATCTAATGCATTATACTATGTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCTTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGTCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCTTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGTCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCAGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGTCATGCACATACTCAGCCCATCTCTAATCATGAAGATCAAGAGTTGACCTTGTCAGGAAGAGGATTGAGTAGGCTGGGATCTTCGCCGCCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGTCGGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGHAHTQPISNHEDQELTLSGRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPSGPSGVGDDFPKVWRCKCGNKLYMP Homology
BLAST of Csor.00g017440 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14 Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11 Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 3.8e-09 Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05 Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.7e-04 Identity = 32/105 (30.48%), Postives = 45/105 (42.86%), Query Frame = 0
BLAST of Csor.00g017440 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 239 bits (611), Expect = 6.69e-80 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Csor.00g017440 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 238 bits (606), Expect = 3.87e-79 Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of Csor.00g017440 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 225 bits (574), Expect = 3.15e-74 Identity = 109/114 (95.61%), Postives = 109/114 (95.61%), Query Frame = 0
BLAST of Csor.00g017440 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 214 bits (544), Expect = 1.12e-69 Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0
BLAST of Csor.00g017440 vs. NCBI nr
Match: KAG6583315.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210 bits (534), Expect = 3.74e-68 Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy TrEMBL
Match: A0A0A0LXR9 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=3 SV=1) HSP 1 Score: 108 bits (271), Expect = 5.37e-28 Identity = 67/147 (45.58%), Postives = 77/147 (52.38%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy TrEMBL
Match: A0A6J1KAS0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1) HSP 1 Score: 104 bits (259), Expect = 4.04e-26 Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy TrEMBL
Match: A0A6J1G964 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 103 bits (258), Expect = 6.04e-26 Identity = 59/130 (45.38%), Postives = 72/130 (55.38%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.61e-24 Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 0
BLAST of Csor.00g017440 vs. ExPASy TrEMBL
Match: A0A6J1G961 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.18e-23 Identity = 52/112 (46.43%), Postives = 62/112 (55.36%), Query Frame = 0
BLAST of Csor.00g017440 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 80.9 bits (198), Expect = 7.3e-16 Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0
BLAST of Csor.00g017440 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 80.9 bits (198), Expect = 7.3e-16 Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0
BLAST of Csor.00g017440 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12 Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Csor.00g017440 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10 Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Csor.00g017440 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06 Identity = 29/97 (29.90%), Postives = 50/97 (51.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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