Csor.00g017210 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g017210
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 217992 .. 218486 (-)
RNA-Seq ExpressionCsor.00g017210
SyntenyCsor.00g017210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATATCTGTCGATATCTGTGATCACTGTGCAATTAAAGATTATAGACGGTTTAAGGAAGTGGTTAAGTAGCTACCAAATTTCGAGGGAAGATGAATTACTGACTGAAAACAGAAAATCGACTGGTGGAGGAAATCCATTTCAGCACATTTGCGTAATTCAAAATTTGCTCAACAAGCCAACAGTTCCGGGAGAAGAGGATTCAATTTTCAATTGGAAAGCGATAATGCTTGAAGAGATAATGATACAGAAAATAGTGGAGGAAAATTTCAACACGGAAACAGAACTAAACAACATACCGAATATGGGCGAGTTCAGGTGGAGCACAGAAGAGGAAATTCCTTCCCTTCGAAAGTTGAGAGAGTCTTGGAAGAGAAAAGGAAGGGAAATGAATAAGTGGTTGAGACTGAGGAACTGGGGCATCGTCCATGGTGGGCGAGTGCCGCCATTTCCCGCTTCCACATTTCTCGTGTTTTACCTCTCACTAGAATAG

mRNA sequence

ATGATATATCTGTCGATATCTGTGATCACTGTGCAATTAAAGATTATAGACGGTTTAAGGAAGTGGTTAAGTAGCTACCAAATTTCGAGGGAAGATGAATTACTGACTGAAAACAGAAAATCGACTGGTGGAGGAAATCCATTTCAGCACATTTGCGTAATTCAAAATTTGCTCAACAAGCCAACAGTTCCGGGAGAAGAGGATTCAATTTTCAATTGGAAAGCGATAATGCTTGAAGAGATAATGATACAGAAAATAGTGGAGGAAAATTTCAACACGGAAACAGAACTAAACAACATACCGAATATGGGCGAGTTCAGGTGGAGCACAGAAGAGGAAATTCCTTCCCTTCGAAAGTTGAGAGAGTCTTGGAAGAGAAAAGGAAGGGAAATGAATAAGTGGTTGAGACTGAGGAACTGGGGCATCGTCCATGGTGGGCGAGTGCCGCCATTTCCCGCTTCCACATTTCTCGTGTTTTACCTCTCACTAGAATAG

Coding sequence (CDS)

ATGATATATCTGTCGATATCTGTGATCACTGTGCAATTAAAGATTATAGACGGTTTAAGGAAGTGGTTAAGTAGCTACCAAATTTCGAGGGAAGATGAATTACTGACTGAAAACAGAAAATCGACTGGTGGAGGAAATCCATTTCAGCACATTTGCGTAATTCAAAATTTGCTCAACAAGCCAACAGTTCCGGGAGAAGAGGATTCAATTTTCAATTGGAAAGCGATAATGCTTGAAGAGATAATGATACAGAAAATAGTGGAGGAAAATTTCAACACGGAAACAGAACTAAACAACATACCGAATATGGGCGAGTTCAGGTGGAGCACAGAAGAGGAAATTCCTTCCCTTCGAAAGTTGAGAGAGTCTTGGAAGAGAAAAGGAAGGGAAATGAATAAGTGGTTGAGACTGAGGAACTGGGGCATCGTCCATGGTGGGCGAGTGCCGCCATTTCCCGCTTCCACATTTCTCGTGTTTTACCTCTCACTAGAATAG

Protein sequence

MIYLSISVITVQLKIIDGLRKWLSSYQISREDELLTENRKSTGGGNPFQHICVIQNLLNKPTVPGEEDSIFNWKAIMLEEIMIQKIVEENFNTETELNNIPNMGEFRWSTEEEIPSLRKLRESWKRKGREMNKWLRLRNWGIVHGGRVPPFPASTFLVFYLSLE
Homology
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BLAST of Csor.00g017210 vs. NCBI nr
Match: KAG6583338.1 (hypothetical protein SDJN03_19270, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 331 bits (848), Expect = 2.34e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MIYLSISVITVQLKIIDGLRKWLSSYQISREDELLTENRKSTGGGNPFQHICVIQNLLNK 60
           MIYLSISVITVQLKIIDGLRKWLSSYQISREDELLTENRKSTGGGNPFQHICVIQNLLNK
Sbjct: 1   MIYLSISVITVQLKIIDGLRKWLSSYQISREDELLTENRKSTGGGNPFQHICVIQNLLNK 60

Query: 61  PTVPGEEDSIFNWKAIMLEEIMIQKIVEENFNTETELNNIPNMGEFRWSTEEEIPSLRKL 120
           PTVPGEEDSIFNWKAIMLEEIMIQKIVEENFNTETELNNIPNMGEFRWSTEEEIPSLRKL
Sbjct: 61  PTVPGEEDSIFNWKAIMLEEIMIQKIVEENFNTETELNNIPNMGEFRWSTEEEIPSLRKL 120

Query: 121 RESWKRKGREMNKWLRLRNWGIVHGGRVPPFPASTFLVFYLSLE 164
           RESWKRKGREMNKWLRLRNWGIVHGGRVPPFPASTFLVFYLSLE
Sbjct: 121 RESWKRKGREMNKWLRLRNWGIVHGGRVPPFPASTFLVFYLSLE 164

The following BLAST results are available for this feature:
BLAST of Csor.00g017210 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g017210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583338.12.34e-114100.00hypothetical protein SDJN03_19270, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g017210 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g017210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g017210.m01Csor.00g017210.m01mRNA