Csor.00g016160 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g016160
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionVelvet complex subunit B
LocationCsor_Chr13: 805956 .. 806291 (-)
RNA-Seq ExpressionCsor.00g016160
SyntenyCsor.00g016160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCGATTTGGAGTTCCACCATGGGCCGACATGGGTTTCCATTATGGACCGACTTGGGCTTCCACAAACGGTCGATTTGGGCTTCCACTATGGGCCGACTACGGCTTCAACCGATGGGCCGACGTAGGATTCCACCATGGGCCGACTTGGGCTTCCACCTACGGGCCTAGTTCGACTTCACTATGCACCAAAATGGGCTTCCACTATGGGCCAACTTGGGTTTCCACCTATGGGCCAACTTGGGCTTCCACCTATGGGCCGACTTGGGCTTTCCATAATGGGCCGGATTGTTTTCAACCTACGGGCCGAGTTGGGCTTCCACTATGGGCCTAG

mRNA sequence

ATGGACCGATTTGGAGTTCCACCATGGGCCGACATGGGTTTCCATTATGGACCGACTTGGGCTTCCACAAACGGTCGATTTGGGCTTCCACTATGGGCCGACTACGGCTTCAACCGATGGGCCGACGTAGGATTCCACCATGGGCCGACTTGGGCTTCCACCTACGGGCCTAGTTCGACTTCACTATGCACCAAAATGGGCTTCCACTATGGGCCAACTTGGGTTTCCACCTATGGGCCAACTTGGGCTTCCACCTATGGGCCGACTTGGGCTTTCCATAATGGGCCGGATTGTTTTCAACCTACGGGCCGAGTTGGGCTTCCACTATGGGCCTAG

Coding sequence (CDS)

ATGGACCGATTTGGAGTTCCACCATGGGCCGACATGGGTTTCCATTATGGACCGACTTGGGCTTCCACAAACGGTCGATTTGGGCTTCCACTATGGGCCGACTACGGCTTCAACCGATGGGCCGACGTAGGATTCCACCATGGGCCGACTTGGGCTTCCACCTACGGGCCTAGTTCGACTTCACTATGCACCAAAATGGGCTTCCACTATGGGCCAACTTGGGTTTCCACCTATGGGCCAACTTGGGCTTCCACCTATGGGCCGACTTGGGCTTTCCATAATGGGCCGGATTGTTTTCAACCTACGGGCCGAGTTGGGCTTCCACTATGGGCCTAG

Protein sequence

MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSSTSLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCFQPTGRVGLPLWA
Homology
BLAST of Csor.00g016160 vs. ExPASy Swiss-Prot
Match: D8PJU0 (Velvet complex subunit B OS=Schizophyllum commune (strain H4-8 / FGSC 9210) OX=578458 GN=velB PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 34/93 (36.56%), Postives = 40/93 (43.01%), Query Frame = 0

Query: 4   FGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSSTSLC 63
           FG  P       YGP       ++G P  + YG          +GP  AS YGP S S  
Sbjct: 179 FGRAPGPSSATPYGP-------QYGPPSASSYG----PPSASAYGPPSASAYGPPSASA- 238

Query: 64  TKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGP 97
                 YGP   STYGP+ AS YGP  +   GP
Sbjct: 239 ------YGPPSASTYGPSSASAYGPPSSASYGP 253

BLAST of Csor.00g016160 vs. NCBI nr
Match: KAG6583442.1 (hypothetical protein SDJN03_19374, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264 bits (675), Expect = 1.06e-89
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSST 60
           MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSST
Sbjct: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSST 60

Query: 61  SLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCFQPTGRVGLPLWA 111
           SLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCFQPTGRVGLPLWA
Sbjct: 61  SLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCFQPTGRVGLPLWA 111

BLAST of Csor.00g016160 vs. NCBI nr
Match: KAG6583398.1 (hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 8.61e-29
Identity = 61/121 (50.41%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNRWADVGFHHGPTWASTYGPSST 60
           M R G+P WADMGFHYGP WAST GR+GLPLWAD        + F +GPTWAST G    
Sbjct: 1   MGRHGLPIWADMGFHYGPIWASTMGRYGLPLWAD--------IDFKYGPTWASTMGRLGL 60

Query: 61  SLCTKMGFHYGPTWVST--------YGPTWASTYGPTWAFHNGPDCFQ--PTGRVGLPLW 111
           SL  + G  YGP W ST        YGP  AST    WA             GR+GLPLW
Sbjct: 61  SLMGRFGLQYGPKWASTLWAEMGFHYGPVRASTLWAEWASTMSRPGLPLWADGRLGLPLW 113

BLAST of Csor.00g016160 vs. NCBI nr
Match: KAG6583374.1 (hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 3.95e-21
Identity = 49/117 (41.88%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWA---------------DYGFNRWADVGF 60
           M  FG+  WAD+GFH+GP WA    R GL LWA                +G + WAD+GF
Sbjct: 71  MGLFGLQSWADLGFHHGPIWALVVNRSGLQLWAYLVFHYGPIWASTMGRFGLHSWADMGF 130

Query: 61  HHGPTWASTYGPSSTSLCTKMGFHYGPTWVS---------------TYGPTWASTYG 87
           H+GP WAS    S   L   + FHYGP W S               T GPTWAST G
Sbjct: 131 HYGPIWASLVNRSGLQLWAYLVFHYGPIWASMMFNFGLSPWADLGFTRGPTWASTMG 187

BLAST of Csor.00g016160 vs. NCBI nr
Match: KAG6583443.1 (hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.59e-20
Identity = 49/116 (42.24%), Postives = 59/116 (50.86%), Query Frame = 0

Query: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNR---WADV-----GFHHGPTWA 60
           M R G+  WA+ GFH GP+WAST GR  LP +  +GF     WA        FH+ P WA
Sbjct: 1   MGRHGLSLWAEFGFHNGPSWASTMGRVRLPQYETFGFYLGPPWASTYEPTWSFHYEPPWA 60

Query: 61  STYGPSSTSLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCFQPTGRVGLP 108
           ST G     L   +GFHYGPTW ST G         +  FH  P+     G+ GLP
Sbjct: 61  STMGLLGLPLWADLGFHYGPTWASTMGRLGLPLRAES-GFHYEPNWASIMGQHGLP 115

BLAST of Csor.00g016160 vs. NCBI nr
Match: KAG6583441.1 (hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 1.33e-18
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 40  WADVGFHHGPTWASTYGPSSTSLCTKMGFHYGPTWVSTYGPTWASTYGPTWAFHNGPDCF 99
           WAD+GF  GPTWASTYGP+ TS        YGPTW STY P+W STYGP+WA   GP   
Sbjct: 9   WADLGFQDGPTWASTYGPNWTST-------YGPTWASTYEPSWVSTYGPSWASTYGPSWD 68

Query: 100 QPTGRVGLPLW 110
              G + LP W
Sbjct: 69  STMGPLRLPRW 72

BLAST of Csor.00g016160 vs. ExPASy TrEMBL
Match: A0A6Q2XED6 (Uncharacterized protein OS=Esox lucius OX=8010 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.75e-08
Identity = 42/122 (34.43%), Postives = 50/122 (40.98%), Query Frame = 0

Query: 1   MDRFGVPPWADMGFHYGPTWASTNGRFGLPLWADYGFNR---WADVGFHHGPTWASTYGP 60
           M R+GV  W  MG HYG  W     R+G+ LW   G +    W  +G H+G  W      
Sbjct: 59  MVRYGVSLWFGMGSHYGTVWGLIMVRYGVSLWFGMGSHYGMVWG-LGSHYGTVWGFIMVQ 118

Query: 61  SSTSLCTKMGFHYGPTW---VSTYG-PTWA---STYGPTWAF--HNGPDCFQPTGRVGLP 110
              SL   MG HYG  W   +  YG   W    S YG  W    H G        R G+ 
Sbjct: 119 YGVSLWYGMGSHYGLVWGLIMVQYGFSLWCGMGSHYGTVWGLGSHYGTVWVLIMVRYGVS 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
D8PJU06.2e-0436.56Velvet complex subunit B OS=Schizophyllum commune (strain H4-8 / FGSC 9210) OX=5... [more]
Match NameE-valueIdentityDescription
KAG6583442.11.06e-89100.00hypothetical protein SDJN03_19374, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583398.18.61e-2950.41hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583374.13.95e-2141.88hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583443.13.59e-2042.24hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583441.11.33e-1856.34hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6Q2XED68.75e-0834.43Uncharacterized protein OS=Esox lucius OX=8010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g016160.m01Csor.00g016160.m01mRNA