Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA
mRNA sequence
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA
Coding sequence (CDS)
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA
Protein sequence
MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVLRTRQANANRAMSAQPSV
Homology
BLAST of Csor.00g015990 vs. NCBI nr
Match:
KAG6583459.1 (hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 270 bits (690), Expect = 3.83e-91
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG
Sbjct: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPSV 137
RTRQANANRAMSAQPSV
Sbjct: 121 RTRQANANRAMSAQPSV 137
BLAST of Csor.00g015990 vs. NCBI nr
Match:
KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 268 bits (686), Expect = 1.56e-90
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG
Sbjct: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPSV 137
RTRQANANRAMSAQPSV
Sbjct: 121 RTRQANANRAMSAQPSV 137
BLAST of Csor.00g015990 vs. NCBI nr
Match:
XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 uncharacterized protein E6C27_scaffold43059G00740 [Cucumis melo var. makuwa] >TYK01273.1 uncharacterized protein E5676_scaffold49G00600 [Cucumis melo var. makuwa])
HSP 1 Score: 244 bits (623), Expect = 6.55e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQ HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSA-QPS 136
RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137
BLAST of Csor.00g015990 vs. NCBI nr
Match:
XP_011657962.2 (uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical protein Csa_020080 [Cucumis sativus])
HSP 1 Score: 243 bits (620), Expect = 1.88e-80
Identity = 124/137 (90.51%), Postives = 128/137 (93.43%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCL+SFTFLSIAQA+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1 MTRMLTFLFCLASFTFLSIAQADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPAKESKYSTTIQ HRVGAGGILGIVFGITFAV L MGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
Query: 121 RTRQANANRAMSA-QPS 136
RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137
BLAST of Csor.00g015990 vs. NCBI nr
Match:
XP_038876402.1 (uncharacterized protein LOC120068840 [Benincasa hispida])
HSP 1 Score: 236 bits (602), Expect = 9.12e-78
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KD CG
Sbjct: 1 MTRMLTFLFCLTSFTFLSIARAQGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDLCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQKG HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAM 131
TRQANANRA+
Sbjct: 121 HTRQANANRAV 131
BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match:
A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)
HSP 1 Score: 244 bits (623), Expect = 3.17e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQ HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSA-QPS 136
RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137
BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match:
A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)
HSP 1 Score: 244 bits (623), Expect = 3.17e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQ HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSA-QPS 136
RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137
BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match:
A0A0A0LV85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)
HSP 1 Score: 241 bits (616), Expect = 3.70e-80
Identity = 123/137 (89.78%), Postives = 128/137 (93.43%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1 MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
SKCSPLPLAAQVQSTPAKESKYSTTIQ HRVGAGGILGIVFGITFAV L MGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
Query: 121 RTRQANANRAMSA-QPS 136
RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137
BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match:
A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)
HSP 1 Score: 232 bits (592), Expect = 1.63e-76
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
MTQMLTFLFCLSS TFLS+A+AEGRAPHGLVYESP+AFSPMAYDFFHPS Q NAKDPC
Sbjct: 1 MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
ASKCSPLPLAAQVQSTPA++SKYST +QKG H +GAGG+LGIV GI FAV LAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQP 135
RTRQANANRAMS QP
Sbjct: 121 RTRQANANRAMSTQP 135
BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match:
A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)
HSP 1 Score: 216 bits (550), Expect = 3.73e-70
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
M Q LTFLF LSSF+FLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1 MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
Query: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
ASKCSPLPLAAQ+QS PA+ESKYSTT QKG G GGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQP 135
RTR AN NRAMSA+P
Sbjct: 121 RTRLANTNRAMSAKP 132
BLAST of Csor.00g015990 vs. TAIR 10
Match:
AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 94.4 bits (233), Expect = 7.8e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAK-DPC 60
MT +F SS + A A+ RAPHGL YE+PVAFSP A+DFFH + P+ +PC
Sbjct: 1 MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60
Query: 61 GASKCSPLPLAAQVQSTPAKESKYS-TTIQKGTHR-VGAGGILGIVFGITFAVLL 113
S CSPLP+AA+VQ AK + +I GT + G++GI+FG+ FAV++
Sbjct: 61 SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115
BLAST of Csor.00g015990 vs. TAIR 10
Match:
AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 0
Query: 1 MTQMLTFLF-CLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPC 60
+T L F F CLS +SIA + R HG Y +P AFSP AYDFFHP + + +P
Sbjct: 4 LTHSLLFFFSCLSMLLCVSIAGS--RPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63
Query: 61 GAS----KCSPLPLAAQVQSTPAKESKYS----TTIQKGTHRVGAGGILGIVFGITFAVL 120
+S SP P + ++ SK S TT + G G +G+V G++F
Sbjct: 64 KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123
Query: 121 LAMGVYYVLRTRQANANRAM 132
L++G+Y+V++ ++AN R +
Sbjct: 124 LSLGIYFVIKKQRANIIRTI 141
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6583459.1 | 3.83e-91 | 100.00 | hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7019217.1 | 1.56e-90 | 99.27 | hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_008457527.1 | 6.55e-81 | 90.51 | PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 unc... | [more] |
XP_011657962.2 | 1.88e-80 | 90.51 | uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical ... | [more] |
XP_038876402.1 | 9.12e-78 | 90.08 | uncharacterized protein LOC120068840 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7SXJ1 | 3.17e-81 | 90.51 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3C6E2 | 3.17e-81 | 90.51 | uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=... | [more] |
A0A0A0LV85 | 3.70e-80 | 89.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1 | [more] |
A0A6J1DWP3 | 1.63e-76 | 85.19 | uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1GD80 | 3.73e-70 | 82.22 | uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528... | [more] |
Match Name | E-value | Identity | Description | |
AT2G28410.1 | 7.8e-20 | 45.22 | unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact... | [more] |
AT5G60650.1 | 1.1e-13 | 35.00 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |