Csor.00g015990 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g015990
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 967659 .. 968072 (-)
RNA-Seq ExpressionCsor.00g015990
SyntenyCsor.00g015990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

mRNA sequence

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

Coding sequence (CDS)

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTGTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAATGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

Protein sequence

MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVLRTRQANANRAMSAQPSV
Homology
BLAST of Csor.00g015990 vs. NCBI nr
Match: KAG6583459.1 (hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270 bits (690), Expect = 3.83e-91
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
           ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPSV 137
           RTRQANANRAMSAQPSV
Sbjct: 121 RTRQANANRAMSAQPSV 137

BLAST of Csor.00g015990 vs. NCBI nr
Match: KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (686), Expect = 1.56e-90
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
           ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPSV 137
           RTRQANANRAMSAQPSV
Sbjct: 121 RTRQANANRAMSAQPSV 137

BLAST of Csor.00g015990 vs. NCBI nr
Match: XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 uncharacterized protein E6C27_scaffold43059G00740 [Cucumis melo var. makuwa] >TYK01273.1 uncharacterized protein E5676_scaffold49G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (623), Expect = 6.55e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSA-QPS 136
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Csor.00g015990 vs. NCBI nr
Match: XP_011657962.2 (uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical protein Csa_020080 [Cucumis sativus])

HSP 1 Score: 243 bits (620), Expect = 1.88e-80
Identity = 124/137 (90.51%), Postives = 128/137 (93.43%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIAQA+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIAQADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAV L MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMSA-QPS 136
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Csor.00g015990 vs. NCBI nr
Match: XP_038876402.1 (uncharacterized protein LOC120068840 [Benincasa hispida])

HSP 1 Score: 236 bits (602), Expect = 9.12e-78
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KD CG
Sbjct: 1   MTRMLTFLFCLTSFTFLSIARAQGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDLCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQKG HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAM 131
            TRQANANRA+
Sbjct: 121 HTRQANANRAV 131

BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match: A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 3.17e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSA-QPS 136
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match: A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 3.17e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSA-QPS 136
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match: A0A0A0LV85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 3.70e-80
Identity = 123/137 (89.78%), Postives = 128/137 (93.43%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAV L MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMSA-QPS 136
           RTRQANANRAMSA QPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match: A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.63e-76
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MTQMLTFLFCLSS TFLS+A+AEGRAPHGLVYESP+AFSPMAYDFFHPS Q  NAKDPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
           ASKCSPLPLAAQVQSTPA++SKYST +QKG H +GAGG+LGIV GI FAV LAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 135
           RTRQANANRAMS QP
Sbjct: 121 RTRQANANRAMSTQP 135

BLAST of Csor.00g015990 vs. ExPASy TrEMBL
Match: A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 3.73e-70
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M Q LTFLF LSSF+FLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PA+ESKYSTT QKG    G GGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 135
           RTR AN NRAMSA+P
Sbjct: 121 RTRLANTNRAMSAKP 132

BLAST of Csor.00g015990 vs. TAIR 10
Match: AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAK-DPC 60
           MT     +F  SS    + A A+ RAPHGL YE+PVAFSP A+DFFH   + P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQVQSTPAKESKYS-TTIQKGTHR-VGAGGILGIVFGITFAVLL 113
             S CSPLP+AA+VQ   AK  +    +I  GT   +   G++GI+FG+ FAV++
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

BLAST of Csor.00g015990 vs. TAIR 10
Match: AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 0

Query: 1   MTQMLTFLF-CLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPC 60
           +T  L F F CLS    +SIA +  R  HG  Y +P AFSP AYDFFHP +   +  +P 
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGS--RPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63

Query: 61  GAS----KCSPLPLAAQVQSTPAKESKYS----TTIQKGTHRVGAGGILGIVFGITFAVL 120
            +S      SP P    +    ++ SK S    TT +      G G  +G+V G++F   
Sbjct: 64  KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123

Query: 121 LAMGVYYVLRTRQANANRAM 132
           L++G+Y+V++ ++AN  R +
Sbjct: 124 LSLGIYFVIKKQRANIIRTI 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583459.13.83e-91100.00hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019217.11.56e-9099.27hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008457527.16.55e-8190.51PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 unc... [more]
XP_011657962.21.88e-8090.51uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical ... [more]
XP_038876402.19.12e-7890.08uncharacterized protein LOC120068840 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A5A7SXJ13.17e-8190.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C6E23.17e-8190.51uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=... [more]
A0A0A0LV853.70e-8089.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1[more]
A0A6J1DWP31.63e-7685.19uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1GD803.73e-7082.22uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528... [more]
Match NameE-valueIdentityDescription
AT2G28410.17.8e-2045.22unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact... [more]
AT5G60650.11.1e-1335.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35718EXPRESSED PROTEINcoord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g015990.m01Csor.00g015990.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane