Csor.00g015900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g015900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	THO complex subunit 4A-like
Location	Csor_Chr13: 1049521 .. 1052231 (-)
RNA-Seq Expression	Csor.00g015900
Synteny	Csor.00g015900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGATGAATCTTACTACCATCGCCATCCTCTAGCTCTTGTTGTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTACTACTACTTCTACCAGTTTCTCGTTCTTTTCAAAACGGAACTTCGGGTATTTTGTTTTTAATGTTCTGAAAAACATTGGGGGTTTAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGAGGGCTTGAACATGATAATTTTTTTTTGTATGTATTGCTAAGAATTTATTGAAATTGTATATGCAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGTATGTTTAAAGTGTGAAGAACACAAGAGCTTTTGTTTCTTTTTAGCAATATTCTGGCTTTGGTTTGATTTTTTGTTCTTCGTAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTATTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGGTATACATTTCTCTCTTCACTTGTCCTTATTTCTGATTTTTCTATTTGCGTTTACAATTGCAATCATCTATTAACGCAGTTAATGGTATGTGTTCAGAAGTAGATATGAATTTTATTTGCTTTATAATACTTTTGTAAGCCCATGATTGAAGTAATTGTTTTTAGAGTTGTATTGGATTTTGACGTAGATTTTTCAACATTTTCTTGTTATTCTGACTTAGTTCATAGTAAAATCATATTTCATTGCTTTTTGACATGTCCGCTGAAAGTTTTGAAGGGATTAAATTGAACATAAAAATATTTAATTTCAACAACTCGTTAAGATATGTGTACTTAAAAGGAGGTATTTCTGGTTTGACACTATGGACATAGTAAATAGTAACCCATATGATGTTAATCGAAGAAAAATGGCTACACTTGTATGAGAAAATTAGGGGTTATGTATATCTAAATATCTACCTATCTATATATATATTATGATAAGTAGCCGAACCTTCATTAAGAAAAATTGAAAGAATATTAGGGCATAAAAAAGACTCACTAACGGAGGCAAAATTGTATCCATAATTTATTGTCAATTTTGTTTATGATGACAATGTGTTTCTAGGAGCAATTGCATTCAACAACTTTTATTTCTCAAATTTGCGTTTGATCGCATGTCATTAGCTGCTTCCTAATGTTTATTAATATTTTTGAACAACTGTGGGTATCTGATCAAGTTTTTCACACCTTGGCTAGTATTGTCAAAAAACCACATGAACCTACTTCATTTGGTGTTGGAATGCTGGGTGTTATTTTCATTAGGGATTTGAGTTTACAAATTGTCTATTTGACCACTACCCGAATTTCTTGTAGGTTAGCTTACAAGATTTCTATTCAAGTTCTCCAATAAACAAACAACATTAAGGGATCCGGTTCTGCCACATTTTATGCAAGAAAAAACTTAATATGGGTTCCTTCTTTTGCGTGTCAATCCTTTTAGAAAAGAGTCTAGTTAATGATAACTTGGATAGTTTAATGACCAAGATTATTGAATTGAAGATGAAAGATTCCAAGTTGCAAGAAGTTTGTGTGTCATTGTTGAGGTGTATGTTATTATGTGGAGCCTGTGGAGCCTTTGGGGAGGGAGTAATGGCAGGCTCATTAGAGGGCTTGAGTGGTCTTGGTTTTGACTCCTTATTAGGTTCAACATCTCTTTGTGGGTCCAGAATCAGCTTATGTTTTGATCATATGATTCTGAAATTTTGATATTTAAGCTTTTCCATATTGATGATGAATTATATGAAAAAGGTAAAATGCTCACCAAGCCTGCCTTATTAACATTTATCACATAGATATTTTAATTGTGCAATGTTTGATAGAAGCCGTTCTTTCTTTACCTTGGTACCCCTATGACTTCTGCCTGCCTCTGAACAGTTCTGGTAGTTATTTGTGTACATGATCATGCATTACGTTGTTCTTTTTATGCTTCAGTTGGTGCTTAAGTATGAAGCTGATAATTATGTTTTATGTATTTTAATTGAAATTGCTGACATCTAGACTTTTTAATCTGATTTTGATTGCTATTATTGATTCTCTTAATCAGCATGCACTTAACAAATTTTCATTTGATTTTAACAGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

mRNA sequence

ATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTATTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

Coding sequence (CDS)

ATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTATTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.0e-65
Identity = 162/290 (55.86%), Postives = 187/290 (64.48%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVD-------HGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F          G    +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAIPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-63
Identity = 149/248 (60.08%), Postives = 183/248 (73.79%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 244

[Close]

BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.8e-38
Identity = 115/259 (44.40%), Postives = 149/259 (57.53%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSR-----------RFRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYG 120
                 G NR APYS  +     W HD+F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGF------GAGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+ M
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGTNIVTPAIPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSR 236
            +++V + I T   PA +     N  G  R   VLG   GGG  RG   G RGRG  + R
Sbjct: 181 NIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGR 240

[Close]

BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.4e-37
Identity = 121/291 (41.58%), Postives = 159/291 (54.64%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRAAPYST 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR     +N      T
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARR-GPLAVNARPSSFT 60

Query: 61  AQAP-----ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFS 120
              P        W   +F D   A     A AS +E GT+L+V+NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVT 180
           E+G+++RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+ M+LEI+G N  +
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PA-IPASANGNFGNPNG-------FRRGGHVLGRNRGGGRGRGP---------------- 240
            A +    N N    NG        ++GG   GR RGG  GRGP                
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]

BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 114/272 (41.91%), Postives = 150/272 (55.15%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G   +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  ---------GLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNL 120
                    G NR APYS  +     W HD+F D G          + +ETG KL VSNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF-DSGF------GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDG 180
           D+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KHMKLEIVGTNIVTPAIPASA-----------NGNFGNPNGFRRGGHVLGRNRGGGRGRG 236
           + M +++V + I T   PA +           +G FG   G RRG       RGG RGR 
Sbjct: 181 RPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRG------TRGGSRGR- 240

[Close]

BLAST of Csor.00g015900 vs. NCBI nr
Match: KAG6583468.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464 bits (1193), Expect = 2.26e-164
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 242

[Close]

BLAST of Csor.00g015900 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 462 bits (1189), Expect = 9.21e-164
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPA+PASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 242

[Close]

BLAST of Csor.00g015900 vs. NCBI nr
Match: KAG7019223.1 (THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 462 bits (1188), Expect = 1.31e-163
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPA+PASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAM+
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMK 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 242

[Close]

BLAST of Csor.00g015900 vs. NCBI nr
Match: XP_023520096.1 (THO complex subunit 4A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456 bits (1173), Expect = 2.44e-161
Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNI+TPA+PASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSS RGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSS-RGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 241

[Close]

BLAST of Csor.00g015900 vs. NCBI nr
Match: XP_022970368.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 457 bits (1176), Expect = 3.26e-161
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPA+PASANGNFG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRG GSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 276

Query: 241 IN 242
           IN
Sbjct: 277 IN 278

[Close]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 462 bits (1189), Expect = 4.46e-164
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPA+PASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 242

[Close]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 1.58e-161
Identity = 239/242 (98.76%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPA+PASANGNFG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           NPNGFRRGGHVLGRNRGGGRGRGPGRGGRG GSSSRGRGEKLSAEDLDADLEKYHEEAMQ
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 276

Query: 241 IN 242
           IN
Sbjct: 277 IN 278

[Close]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 8.30e-147
Identity = 221/245 (90.20%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGK MKLEIVGTNIVTPA+PA +N +FG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSS---RGRGEKLSAEDLDADLEKYHEE 240
           N NGF RGG  +GRNRGGGRGRGPGRGGRGRGS S   RGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 242
           AMQIN
Sbjct: 241 AMQIN 245

[Close]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 416 bits (1070), Expect = 8.15e-146
Identity = 222/250 (88.80%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPA+PA +N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGRGSSS-------RGRGEKLSAEDLDADLE 240
           NPNGF RGG  +GRNRGGGRGRGPGRG GRGRGS S       RG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 242
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 405 bits (1041), Expect = 1.55e-141
Identity = 214/242 (88.43%), Postives = 222/242 (91.74%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS A+APET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHD+FVDHG AYPS PARAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180
           DKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEIVG NIVTP +PAS+N NFG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           N +GF RGG  LGRNRGGGRGRGPGRGGRGRG+  RG GEKLSAEDLDADLEKYHEEAMQ
Sbjct: 181 NSSGFLRGGRALGRNRGGGRGRGPGRGGRGRGNG-RGGGEKLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 242
           IN
Sbjct: 241 IN 241

[Close]

BLAST of Csor.00g015900 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-66
Identity = 162/288 (56.25%), Postives = 187/288 (64.93%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVD-------HGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F          G    +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAIPASA-------------------NGNF-GNPNG-FRRGGHVLGRNRGG 240
           EIVGTN+  PA+P  A                   NGNF GN NG FR  G  +GR RGG
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

[Close]

BLAST of Csor.00g015900 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.4 bits (633), Expect = 5.7e-66
Identity = 162/290 (55.86%), Postives = 187/290 (64.48%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAQAPETAWSHDMFVD-------HGAAYPSQPARASAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F          G    +     S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIVTPAIPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Csor.00g015900 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 245.0 bits (624), Expect = 6.3e-65
Identity = 150/249 (60.24%), Postives = 184/249 (73.90%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVL-GRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEK 240
           N GN NG  + RGG    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+K
Sbjct: 181 N-GNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDK 240

Query: 241 YHEEAMQIN 243
           YH   M+ N
Sbjct: 241 YHSGDMETN 245

[Close]

BLAST of Csor.00g015900 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 244.6 bits (623), Expect = 8.3e-65
Identity = 149/248 (60.08%), Postives = 183/248 (73.79%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 244

[Close]

BLAST of Csor.00g015900 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.0e-62
Identity = 148/248 (59.68%), Postives = 181/248 (72.98%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRG-SSSRGRGEKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG    +G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 243
           H   M+ N
Sbjct: 241 HSGDMETN 242

The following BLAST results are available for this feature:

BLAST of Csor.00g015900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L719	8.0e-65	55.86	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	1.2e-63	60.08	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
B5FXN8	3.8e-38	44.40	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]
Q6NQ72	5.4e-37	41.58	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q3T0I4	9.3e-37	41.91	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]

BLAST of Csor.00g015900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583468.1	2.26e-164	100.00	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964653.1	9.21e-164	99.17	THO complex subunit 4B-like [Cucurbita moschata]	[more]
KAG7019223.1	1.31e-163	99.17	THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023520096.1	2.44e-161	98.76	THO complex subunit 4A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970368.1	3.26e-161	98.76	THO complex subunit 4A-like [Cucurbita maxima]	[more]

BLAST of Csor.00g015900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLI4	4.46e-164	99.17	THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S...	[more]
A0A6J1I3N4	1.58e-161	98.76	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=...	[more]
A0A1S3C5R6	8.30e-147	90.20	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
A0A0A0LUQ3	8.15e-146	88.80	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV...	[more]
A0A6J1G9Y5	1.55e-141	88.43	THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Csor.00g015900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02530.2	2.0e-66	56.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	5.7e-66	55.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	6.3e-65	60.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.1	8.3e-65	60.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	1.0e-62	59.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 e-value: 4.3E-19 score: 79.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..157 e-value: 1.6E-15 score: 56.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..164 score: 16.124914
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..242 e-value: 6.3E-12 score: 55.6
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 186..235 e-value: 2.2E-6 score: 28.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..222 e-value: 1.3E-26 score: 95.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..242
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..241
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..241
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 87..161 e-value: 7.07859E-43 score: 138.156
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 50..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g015900.m01	Csor.00g015900.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding