Csor.00g015550 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g015550
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-directed RNA polymerase subunit
Location	Csor_Chr13: 1384493 .. 1384835 (+)
RNA-Seq Expression	Csor.00g015550
Synteny	Csor.00g015550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAGCACAAGTGGAGGGTCTGGTGTTCTCCAAACAACCATACATTGAGGATGTCGGCCCTCATAAAATGGAAGTTTCTTTTGGTCTAACTTCGTATTAGCTGTATTAAGAACCTTTGGTTACTAGTCTGATTCTACATTTTTATTTGCTCTTATTGCAGTAAGAGCATGCAGTTCAGTACCTTCTCTAGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACTGCTAGAAAACCGATCAACGGCGGCTTGCTGGATGCCGCCGGATCCTCGAATGGTATGATTCTTATATTGTTAGGGGGATTAATGGTATAA

mRNA sequence

ATGAATAAAGCACAAGTGGAGGGTCTGGTGTTCTCCAAACAACCATACATTGAGGATGTCGGCCCTCATAAAATGGAAGTTTCTTTTGGTCTAACTTCTAAGAGCATGCAGTTCAGTACCTTCTCTAGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACTGCTAGAAAACCGATCAACGGCGGCTTGCTGGATGCCGCCGGATCCTCGAATGGTATGATTCTTATATTGTTAGGGGGATTAATGGTATAA

Coding sequence (CDS)

ATGAATAAAGCACAAGTGGAGGGTCTGGTGTTCTCCAAACAACCATACATTGAGGATGTCGGCCCTCATAAAATGGAAGTTTCTTTTGGTCTAACTTCTAAGAGCATGCAGTTCAGTACCTTCTCTAGATCTGAAATTAGCAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACTGCTAGAAAACCGATCAACGGCGGCTTGCTGGATGCCGCCGGATCCTCGAATGGTATGATTCTTATATTGTTAGGGGGATTAATGGTATAA

Protein sequence

MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYYDTARKPINGGLLDAAGSSNGMILILLGGLMV

Homology

[Close]

BLAST of Csor.00g015550 vs. ExPASy Swiss-Prot
Match: F4JXF9 (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.4e-07
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 11 FSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYYDTARKPINGG 70
          F+K+PYIEDVGP K+        KS+ FS  S  E+ K AEVQV+    YD + KP   G
Sbjct: 9  FTKKPYIEDVGPLKI--------KSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENG 63

Query: 71 LLD 74
          LLD
Sbjct: 69 LLD 63

[Close]

BLAST of Csor.00g015550 vs. NCBI nr
Match: KAG6583503.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (451), Expect = 3.72e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY
Sbjct: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLDAAGSSNGMILILLGGLMV 91
          DTARKPINGGLLDAAGSSNGMILILLGGLMV
Sbjct: 61 DTARKPINGGLLDAAGSSNGMILILLGGLMV 91

[Close]

BLAST of Csor.00g015550 vs. NCBI nr
Match: KAA0036961.1 (DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa] >TYK21246.1 DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 2.59e-29
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MN+AQVEGLVF+KQPYIEDVGP K+        KSMQF+TFS +EISK+AEVQVYKGLYY
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKI--------KSMQFTTFSGAEISKLAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. NCBI nr
Match: XP_023519826.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114 bits (286), Expect = 3.11e-27
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MNKAQVEGLVF+KQPYIEDVGP K+        KSMQFSTFS SEISKMAEVQVYKGLYY
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKI--------KSMQFSTFSGSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. NCBI nr
Match: XP_022964790.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata])

HSP 1 Score: 114 bits (286), Expect = 3.11e-27
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MNKAQVEGLVF+KQPYIEDVGP K+        KSMQFSTFS SEISKMAEVQVYKGLYY
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKI--------KSMQFSTFSGSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. NCBI nr
Match: KAG6583479.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (283), Expect = 7.91e-27
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MN+AQVEGLVF+KQPYIEDVGP K+        KSMQFSTFS SEISKMAEVQVYKGLYY
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKI--------KSMQFSTFSGSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL
Match: A0A5A7T5U3 (DNA-directed RNA polymerase III subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00560 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 1.25e-29
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MN+AQVEGLVF+KQPYIEDVGP K+        KSMQF+TFS +EISK+AEVQVYKGLYY
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKI--------KSMQFTTFSGAEISKLAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL
Match: A0A0A0LSG9 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 4.13e-28
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MN+AQVEGLVF+KQPYIEDVGP K+        KSMQF+TFS +EISK+AEVQVYKGLYY
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKI--------KSMQFTTFSGAEISKLAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL
Match: A0A6J1HLT9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111464789 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.51e-27
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MNKAQVEGLVF+KQPYIEDVGP K+        KSMQFSTFS SEISKMAEVQVYKGLYY
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKI--------KSMQFSTFSGSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL
Match: A0A6J1I0L0 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 PE=3 SV=1)

HSP 1 Score: 113 bits (282), Expect = 5.23e-27
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MNK QVEGLVF+KQPYIEDVGP K+        KSMQFSTFS SEISKMAEVQVYKGLYY
Sbjct: 1  MNKTQVEGLVFTKQPYIEDVGPRKI--------KSMQFSTFSGSEISKMAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL
Match: A0A1S3CNX9 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3 SV=1)

HSP 1 Score: 110 bits (274), Expect = 6.29e-26
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MNKAQVEGLVFSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYY 60
          MN+AQVEGLVF+KQPYIEDVGP K+        KSMQF+TFS +EISK+AEVQVYKGLYY
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKI--------KSMQFTTFSGAEISKLAEVQVYKGLYY 60

Query: 61 DTARKPINGGLLD 73
          DT RKPI+GGLLD
Sbjct: 61 DTTRKPIDGGLLD 65

[Close]

BLAST of Csor.00g015550 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 11 FSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYYDTARKPINGG 70
          F+K+PYIEDVGP K+        KS+ FS  S  E+ K AEVQV+    YD + KP   G
Sbjct: 9  FTKKPYIEDVGPLKI--------KSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENG 63

Query: 71 LLD 74
          LLD
Sbjct: 69 LLD 63

[Close]

BLAST of Csor.00g015550 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 11 FSKQPYIEDVGPHKMEVSFGLTSKSMQFSTFSRSEISKMAEVQVYKGLYYDTARKPINGG 70
          F+K+PYIEDVGP K+        KS+ FS  S  E+ K AEVQV+    YD + KP   G
Sbjct: 9  FTKKPYIEDVGPLKI--------KSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENG 63

Query: 71 LLD 74
          LLD
Sbjct: 69 LLD 63

The following BLAST results are available for this feature:

BLAST of Csor.00g015550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JXF9	8.4e-07	49.21	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRP...	[more]

BLAST of Csor.00g015550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583503.1	3.72e-56	100.00	DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp...	[more]
KAA0036961.1	2.59e-29	75.34	DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa] >TYK21246.1...	[more]
XP_023519826.1	3.11e-27	80.82	DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022964790.1	3.11e-27	80.82	DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata]	[more]
KAG6583479.1	7.91e-27	79.45	DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Csor.00g015550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5U3	1.25e-29	75.34	DNA-directed RNA polymerase III subunit 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0LSG9	4.13e-28	75.34	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1	[more]
A0A6J1HLT9	1.51e-27	80.82	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146478...	[more]
A0A6J1I0L0	5.23e-27	79.45	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 ...	[more]
A0A1S3CNX9	6.29e-26	75.34	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3...	[more]

BLAST of Csor.00g015550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60040.1	5.9e-08	49.21	nuclear RNA polymerase C1	[more]
AT5G60040.2	5.9e-08	49.21	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 30..81 e-value: 2.2E-5 score: 26.1
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 34..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g015550.m01	Csor.00g015550.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding