Csor.00g015540 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g015540
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDNA-directed RNA polymerase subunit
LocationCsor_Chr13: 1507039 .. 1507339 (+)
RNA-Seq ExpressionCsor.00g015540
SyntenyCsor.00g015540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAAGCACTAGTGGAGGGTTTGGTGTTCTCCAAACAACCATACATTCAGGATATCGGCCCTCGTAAAACGTAAGTTTCTTTTGGTCTAACTTCTTAGTAGCTGTATTAAGAACCCGTCATTACTAGTCTTATTGTGCATTTTTGTTTGCTCTTACTGCAGCAAGAGTATGCAATTCAGTACCTTCTTTGGATTTGAATTTAGTAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACCACTAGGAAACCGATCGACGGCCGCTTGCTGGATCCTCGAATGGTATGA

mRNA sequence

ATGAATAAAGCACTAGTGGAGGGTTTGGTGTTCTCCAAACAACCATACATTCAGGATATCGGCCCTCGTAAAACCAAGAGTATGCAATTCAGTACCTTCTTTGGATTTGAATTTAGTAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACCACTAGGAAACCGATCGACGGCCGCTTGCTGGATCCTCGAATGGTATGA

Coding sequence (CDS)

ATGAATAAAGCACTAGTGGAGGGTTTGGTGTTCTCCAAACAACCATACATTCAGGATATCGGCCCTCGTAAAACCAAGAGTATGCAATTCAGTACCTTCTTTGGATTTGAATTTAGTAAAATGGCTGAAGTTCAGGTGTATAAAGGCTTGTATTATGATACCACTAGGAAACCGATCGACGGCCGCTTGCTGGATCCTCGAATGGTATGA

Protein sequence

MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPIDGRLLDPRMV
Homology
[Close]
BLAST of Csor.00g015540 vs. ExPASy Swiss-Prot
Match: F4JXF9 (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-09
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 11 FSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPIDGRLLDPRM 69
          F+K+PYI+D+GP K KS+ FS     E  K AEVQV+    YD + KP +  LLDPRM
Sbjct: 9  FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRM 66

[Close]
BLAST of Csor.00g015540 vs. NCBI nr
Match: KAG6583504.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141 bits (356), Expect = 2.44e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRMV 69
          GRLLDPRMV
Sbjct: 61 GRLLDPRMV 69

[Close]
BLAST of Csor.00g015540 vs. NCBI nr
Match: KAA0036961.1 (DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa] >TYK21246.1 DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 6.62e-33
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MN+A VEGLVF+KQPYI+D+GPRK KSMQF+TF G E SK+AEVQVYKGLYYDTTRKPID
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. NCBI nr
Match: XP_023519826.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121 bits (304), Expect = 4.58e-30
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MNKA VEGLVF+KQPYI+D+GPRK KSMQFSTF G E SKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. NCBI nr
Match: XP_022964790.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata])

HSP 1 Score: 121 bits (304), Expect = 4.58e-30
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MNKA VEGLVF+KQPYI+D+GPRK KSMQFSTF G E SKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. NCBI nr
Match: KAG6583479.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (301), Expect = 1.16e-29
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MN+A VEGLVF+KQPYI+D+GPRK KSMQFSTF G E SKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match: A0A5A7T5U3 (DNA-directed RNA polymerase III subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00560 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 3.20e-33
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MN+A VEGLVF+KQPYI+D+GPRK KSMQF+TF G E SK+AEVQVYKGLYYDTTRKPID
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match: A0A0A0LSG9 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.15e-31
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MN+A VEGLVF+KQPYI+D+GPRK KSMQF+TF G E SK+AEVQVYKGLYYDTTRKPID
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match: A0A6J1HLT9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111464789 PE=3 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.22e-30
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MNKA VEGLVF+KQPYI+D+GPRK KSMQFSTF G E SKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match: A0A6J1I0L0 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 PE=3 SV=1)

HSP 1 Score: 120 bits (300), Expect = 7.69e-30
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MNK  VEGLVF+KQPYI+D+GPRK KSMQFSTF G E SKMAEVQVYKGLYYDTTRKPID
Sbjct: 1  MNKTQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match: A0A1S3CNX9 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3 SV=1)

HSP 1 Score: 118 bits (295), Expect = 3.64e-29
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 1  MNKALVEGLVFSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPID 60
          MN+A VEGLVF+KQPYI+D+GPRK KSMQF+TF G E SK+AEVQVYKGLYYDTTRKPID
Sbjct: 1  MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61 GRLLDPRM 68
          G LLDPRM
Sbjct: 61 GGLLDPRM 68

[Close]
BLAST of Csor.00g015540 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 11 FSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPIDGRLLDPRM 69
          F+K+PYI+D+GP K KS+ FS     E  K AEVQV+    YD + KP +  LLDPRM
Sbjct: 9  FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRM 66

[Close]
BLAST of Csor.00g015540 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 11 FSKQPYIQDIGPRKTKSMQFSTFFGFEFSKMAEVQVYKGLYYDTTRKPIDGRLLDPRM 69
          F+K+PYI+D+GP K KS+ FS     E  K AEVQV+    YD + KP +  LLDPRM
Sbjct: 9  FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRM 66

The following BLAST results are available for this feature:
BLAST of Csor.00g015540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JXF92.3e-0951.72DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRP... [more]
BLAST of Csor.00g015540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583504.12.44e-42100.00DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp... [more]
KAA0036961.16.62e-3382.35DNA-directed RNA polymerase III subunit 1 [Cucumis melo var. makuwa] >TYK21246.1... [more]
XP_023519826.14.58e-3086.76DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo][more]
XP_022964790.14.58e-3086.76DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata][more]
KAG6583479.11.16e-2985.29DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp... [more]
BLAST of Csor.00g015540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T5U33.20e-3382.35DNA-directed RNA polymerase III subunit 1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0LSG91.15e-3182.35DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G084270 PE=4 SV=1[more]
A0A6J1HLT92.22e-3086.76DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146478... [more]
A0A6J1I0L07.69e-3085.29DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 ... [more]
A0A1S3CNX93.64e-2982.35DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3... [more]
BLAST of Csor.00g015540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G60040.11.7e-1051.72nuclear RNA polymerase C1 [more]
AT5G60040.21.7e-1051.72nuclear RNA polymerase C1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g015540.m01Csor.00g015540.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046872 metal ion binding