Csor.00g014830 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g014830
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 3796447 .. 3797627 (-)
RNA-Seq ExpressionCsor.00g014830
SyntenyCsor.00g014830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCTTTCTCGATGTGAAGAAGATCACTAGTCTTAGCCCTTGCGGTTCGAAGGTGCTTGATTCCTCAGTTCCCCGCCCTAACCTTTTTTAAGAAGAGAGGTGTTAAAAACCGATAAGAATGAATTAGAATTAGAAATAGTAGTTACTCATTACAAACAAGAAAAGAGTGTAGGTTTCAGTTCAGGCTACAGTCTCCTCAACGAAAGAAAGATATCACTCACACTATGCCCTGCTTTCCTTGGGAGTGAGAAGTGAATCAGGGATTTGCCATGGATACGAGTTCAAGGAGGGTTCTGAAATAGTTCTGCATCAAGGACTTTGATCTTGATTTATGATTTAACCGCATTCTAGAAGCGTCAGCCTCATTGTCCTTTGTCTGGGTACACAGCAGGCTTGATCTTTATCACGATCATGGCTACAAAATATGCCTATCTGGGTTTTGCTCTTTTTCCGGGTCTCGCTCTTGCTGCATTGTCTCTAGATTCCGTTCCGGCGGGCTATAAAGGTAATTCTGAACACCAACCACATATCTTTTTCAAGAAAGATGAAACAAGCAACTACGCAAACGGGGGCAGCAGACAGAACGAAAACTATCAAACGGAGGGGAAGGCGTCTACTGGCAGTAGGCCCGGGGAACGGGGGCAAGATATGATAGAGAGAAAACAAGATCACAGAACTAGCCCTAGCAATCAGAGGTGACGGAAGCCTGATTATTGTACCGCTGAAAGTAGTTCACTGTATCAGTGTCAATGAATAAAGTTGTTCGTAGGTGATAGTTCTGGAGATCGAATGGAATTGATAGCTTAAAGTCGTAGTTCAGGCTGTGTGCTTGAACTGACCTTTCGAGAGGAACGGGGCGCAAGGGAGGCTTTTCTTTTTTCTTTTTATCCACTCCAAGCTTTCGGAAGCAGCGAAGGTTATCAACAAGTCAAAATGCAAAATGAAAGGAATAACGAGTAGTGGGAATAGACCAAGCACTGATTCAATTCCAGCTGCTGAGATTACGATGCTGATTCAACAAGTTCGGATGGTAGGCTAGGGCTTGATGCAGCTTCGGCTGTGAACTCCGAAGAATCGACTATTAGCCACTATCTTATAGTCGAGAGCCCCTTGATGCTGAGAATGAGGATTAGACTGTCAAAGTATAAGAATATAACAAGGAGAGCCAATACGTGA

mRNA sequence

ATGAGTTTCTTTCTCGATGTGAAGAAGATCACTAGTCTTAGCCCTTGCGGTTCGAAGAAGCGTCAGCCTCATTGTCCTTTGTCTGGGTACACAGCAGGCTTGATCTTTATCACGATCATGGCTACAAAATATGCCTATCTGGGTTTTGCTCTTTTTCCGGGTCTCGCTCTTGCTGCATTGTCTCTAGATTCCGTTCCGGCGGGCTATAAAGGTAATTCTGAACACCAACCACATATCTTTTTCAAGAAAGATGAAACAAGCAACTACGCAAACGGGGGCAGCAGACAGAACGAAAACTATCAAACGGAGGGGAAGGCGTCTACTGGCAGTAGGCCCGGGGAACGGGGGCAAGATATGATAGAGAGAAAACAAGATCACAGAACTAGCCCTAGCAATCAGAGGCTAGGGCTTGATGCAGCTTCGGCTGTGAACTCCGAAGAATCGACTATTAGCCACTATCTTATAGTCGAGAGCCCCTTGATGCTGAGAATGAGGATTAGACTGTCAAAGTATAAGAATATAACAAGGAGAGCCAATACGTGA

Coding sequence (CDS)

ATGAGTTTCTTTCTCGATGTGAAGAAGATCACTAGTCTTAGCCCTTGCGGTTCGAAGAAGCGTCAGCCTCATTGTCCTTTGTCTGGGTACACAGCAGGCTTGATCTTTATCACGATCATGGCTACAAAATATGCCTATCTGGGTTTTGCTCTTTTTCCGGGTCTCGCTCTTGCTGCATTGTCTCTAGATTCCGTTCCGGCGGGCTATAAAGGTAATTCTGAACACCAACCACATATCTTTTTCAAGAAAGATGAAACAAGCAACTACGCAAACGGGGGCAGCAGACAGAACGAAAACTATCAAACGGAGGGGAAGGCGTCTACTGGCAGTAGGCCCGGGGAACGGGGGCAAGATATGATAGAGAGAAAACAAGATCACAGAACTAGCCCTAGCAATCAGAGGCTAGGGCTTGATGCAGCTTCGGCTGTGAACTCCGAAGAATCGACTATTAGCCACTATCTTATAGTCGAGAGCCCCTTGATGCTGAGAATGAGGATTAGACTGTCAAAGTATAAGAATATAACAAGGAGAGCCAATACGTGA

Protein sequence

MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAALSLDSVPAGYKGNSEHQPHIFFKKDETSNYANGGSRQNENYQTEGKASTGSRPGERGQDMIERKQDHRTSPSNQRLGLDAASAVNSEESTISHYLIVESPLMLRMRIRLSKYKNITRRANT
Homology
[Close]
BLAST of Csor.00g014830 vs. NCBI nr
Match: KAG6583620.1 (hypothetical protein SDJN03_19552, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351 bits (901), Expect = 6.53e-122
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAAL 60
           MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAAL
Sbjct: 1   MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAAL 60

Query: 61  SLDSVPAGYKGNSEHQPHIFFKKDETSNYANGGSRQNENYQTEGKASTGSRPGERGQDMI 120
           SLDSVPAGYKGNSEHQPHIFFKKDETSNYANGGSRQNENYQTEGKASTGSRPGERGQDMI
Sbjct: 61  SLDSVPAGYKGNSEHQPHIFFKKDETSNYANGGSRQNENYQTEGKASTGSRPGERGQDMI 120

Query: 121 ERKQDHRTSPSNQRLGLDAASAVNSEESTISHYLIVESPLMLRMRIRLSKYKNITRRANT 180
           ERKQDHRTSPSNQRLGLDAASAVNSEESTISHYLIVESPLMLRMRIRLSKYKNITRRANT
Sbjct: 121 ERKQDHRTSPSNQRLGLDAASAVNSEESTISHYLIVESPLMLRMRIRLSKYKNITRRANT 180

[Close]
BLAST of Csor.00g014830 vs. NCBI nr
Match: KAG6585943.1 (hypothetical protein SDJN03_18676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (314), Expect = 2.08e-32
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 0 

Query: 1  MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAAL 60
          MSFFLD KKITSLSPCG K+RQP CPL GYTAGLIFITIMATKYA LGFALF GLALAAL
Sbjct: 1  MSFFLDAKKITSLSPCGLKERQPQCPLPGYTAGLIFITIMATKYANLGFALFLGLALAAL 60

Query: 61 SLDSVPAGYK 70
          SLDSVPAGYK
Sbjct: 61 SLDSVPAGYK 70

[Close]
BLAST of Csor.00g014830 vs. NCBI nr
Match: KAG6588537.1 (hypothetical protein SDJN03_17102, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (314), Expect = 3.10e-32
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 1  MSFFLDVKKITSLSPCGSKKRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAAL 60
          MSFFLD KKITSLSPCGSK RQP CPL GYTAGLIFITIMA K AYLGFALFPGLALAAL
Sbjct: 1  MSFFLDAKKITSLSPCGSK-RQPQCPLPGYTAGLIFITIMARKSAYLGFALFPGLALAAL 60

Query: 61 SLDSVPAGYKG 71
          SLDSVP+GYKG
Sbjct: 61 SLDSVPSGYKG 70

[Close]
BLAST of Csor.00g014830 vs. NCBI nr
Match: KAG6585903.1 (hypothetical protein SDJN03_18636, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.44e-19
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 20 KRQPHCPLSGYTAGLIFITIMATKYAYLGFALFPGLALAALSLDSVPAGYK 70
          KRQP CPL GYT GLI ITIMATKY YLGFALF GLALAALSLDS+PAGYK
Sbjct: 28 KRQPQCPLPGYTVGLILITIMATKYVYLGFALFSGLALAALSLDSIPAGYK 78

[Close]
BLAST of Csor.00g014830 vs. NCBI nr
Match: KAG6585947.1 (hypothetical protein SDJN03_18680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 2.51e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 40 MATKYAYLGFALFPGLALAALSLDSVPAGYK 70
          MATKYAYLGFALFPGLALAALSLDSVPAGYK
Sbjct: 1  MATKYAYLGFALFPGLALAALSLDSVPAGYK 31

The following BLAST results are available for this feature:
BLAST of Csor.00g014830 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g014830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583620.16.53e-122100.00hypothetical protein SDJN03_19552, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585943.12.08e-3290.00hypothetical protein SDJN03_18676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588537.13.10e-3290.14hypothetical protein SDJN03_17102, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585903.12.44e-1986.27hypothetical protein SDJN03_18636, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585947.12.51e-09100.00hypothetical protein SDJN03_18680, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g014830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g014830 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g014830.m01Csor.00g014830.m01mRNA