Csor.00g014030 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g014030
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	Csor_Chr02: 10150247 .. 10150871 (-)
RNA-Seq Expression	Csor.00g014030
Synteny	Csor.00g014030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCTCAGGGAGTAGCAGCAATAGCTTCGTCGTCATCAACAACAACAACAACAACAACAACGCCATGAACCACCAACACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACTAAATTACTTAAAATAAAAAAAAAAAATGAACTGAATTGCTTCAAAGTTACAAGCTTTGTGAGTGAGCGCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCATACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAGGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGA

mRNA sequence

ATGGACTTCTCAGGGAGTAGCAGCAATAGCTTCGTCGTCATCAACAACAACAACAACAACAACAACGCCATGAACCACCAACACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCATACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAGGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGA

Coding sequence (CDS)

ATGGACTTCTCAGGGAGTAGCAGCAATAGCTTCGTCGTCATCAACAACAACAACAACAACAACAACGCCATGAACCACCAACACTCCGCAACAGCCTCCTCTTCCAGCAGCAGATATGAGAATCAAAAGCGCCGTGACTGGAAAACTTTCGGTCAATACCTCAACAATCATCGCCCACCGCTCGCCCTCTCACGATGTAGCGGCGCTCATGTCCTCGAATTCCTCAGGTACCTAGATCAATTTGGAAAGACGAAAGTGCATACACCCATCTGCCCTTTCTACGGCCTTCCGAACCCTCCCGCACCCTGTCCATGCCCTCTTCGGCAGGCGTGGGGGAGCCTCGACGCTTTGGTGGGACGCCTTCGAGCCGCTTTTGAAGAGAATGGAGGGAAGCCTGAGGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTGTATCTTCGTGAGGTTCGTGATTTGCAGTCAAAGGCCAGAGGGATCAGCTACGACAAGAAAAGAAAGCGCCCACCATCTCAACACCCCTTGCCTCCTCCTCACACTGCACCTTCATGA

Protein sequence

MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTAPS

Homology

[Close]

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-67
Identity = 115/141 (81.56%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 30  ATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 89
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 90  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 149
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 150 RDLQSKARGISYDKKRKRPPS 171
           R+ Q++ARGISY+KK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-67
Identity = 115/141 (81.56%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 30  ATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTP 89
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 90  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 149
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 150 RDLQSKARGISYDKKRKRPPS 171
           R+ Q++ARGISY+KK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.8e-67
Identity = 130/184 (70.65%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 5   GSSSNSFVVINNNNNNNNAMNHQ------HSATASSSSSRYENQKRRDWKTFGQYLNNHR 64
           G  +N  ++ NN+++   A   +       S++ S++SSRYENQKRRDW TFGQYL NHR
Sbjct: 15  GGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHR 74

Query: 65  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALV 124
           PPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+
Sbjct: 75  PPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALI 134

Query: 125 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPH 183
           GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SY+KK+++     PLP   
Sbjct: 135 GRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRK----RPLPSSS 194

[Close]

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.5e-66
Identity = 133/187 (71.12%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 11  FVVINNNNNNNNAMNHQHSATASSSS--------------SRYENQKRRDWKTFGQYLNN 70
           F+   N ++N N M    + T ++SS              SRYENQKRRDW TFGQYL N
Sbjct: 7   FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRN 66

Query: 71  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDA 130
           HRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDA
Sbjct: 67  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDA 126

Query: 131 LVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYD-KKRKRPPSQHPLP 183
           L+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISY+ KKRKRPP   PLP
Sbjct: 127 LIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPP--PLP 186

[Close]

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.6e-65
Identity = 117/146 (80.14%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 29  SATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHT 88
           ++ A +S SRYE+QKRRDW TFGQYL NHRPPL+L+RCSGAHVLEFLRYLDQFGKTKVH 
Sbjct: 31  ASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHA 90

Query: 89  PICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLRE 148
           P CPF+G P PPAPCPCPLRQAWGSLDALVGRLRAA+EENGG+PE NPFGARAVRLYLRE
Sbjct: 91  PACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLRE 150

Query: 149 VRDLQSKARGISYD-KKRKRPPSQHP 174
           VR+ Q++ARG+SY+ KKRK+PP  HP
Sbjct: 151 VREHQARARGVSYEKKKRKKPP--HP 174

[Close]

BLAST of Csor.00g014030 vs. NCBI nr
Match: KAG6606371.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (943), Expect = 2.99e-128
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

Query: 181 PS 182
           PS
Sbjct: 181 PS 182

[Close]

BLAST of Csor.00g014030 vs. NCBI nr
Match: XP_022931179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata])

HSP 1 Score: 365 bits (936), Expect = 3.50e-127
Identity = 180/182 (98.90%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS V+INNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

Query: 181 PS 182
           PS
Sbjct: 181 PS 182

[Close]

BLAST of Csor.00g014030 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (903), Expect = 3.27e-122
Identity = 175/182 (96.15%), Postives = 177/182 (97.25%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS ++    NNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIII----NNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 178

Query: 181 PS 182
           PS
Sbjct: 181 PS 178

[Close]

BLAST of Csor.00g014030 vs. NCBI nr
Match: XP_022995850.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 351 bits (900), Expect = 1.04e-121
Identity = 176/182 (96.70%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS + INNNNNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNS-ININNNNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYDKKRKRPPSQHPLPPPH A
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLPPPHAA 180

Query: 181 PS 182
           PS
Sbjct: 181 PS 181

[Close]

BLAST of Csor.00g014030 vs. NCBI nr
Match: XP_023532602.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344 bits (883), Expect = 3.30e-119
Identity = 174/182 (95.60%), Postives = 174/182 (95.60%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS       NNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNS-------NNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 175

Query: 181 PS 182
           PS
Sbjct: 181 PS 175

[Close]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 365 bits (936), Expect = 1.69e-127
Identity = 180/182 (98.90%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS V+INNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180

Query: 181 PS 182
           PS
Sbjct: 181 PS 182

[Close]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL
Match: A0A6J1K523 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491256 PE=3 SV=1)

HSP 1 Score: 351 bits (900), Expect = 5.05e-122
Identity = 176/182 (96.70%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFSGSSSNS + INNNNNNN AMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNS-ININNNNNNNIAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPHTA 180
           LRAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYDKKRKRPPSQHPLPPPH A
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLPPPHAA 180

Query: 181 PS 182
           PS
Sbjct: 181 PS 181

[Close]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.86e-105
Identity = 154/174 (88.51%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFS  SS++ ++    NNNNN +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSSGSSHNIII----NNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPPSQ PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 170

[Close]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 307 bits (786), Expect = 1.17e-104
Identity = 153/174 (87.93%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFS SSS++ ++    N+NNN +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSSSSSHNIII----NHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 307 bits (786), Expect = 1.17e-104
Identity = 153/174 (87.93%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MDFSGSSSNSFVVINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFS SSS++ ++    N+NNN +NHQ  A  SSSSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSSSSSHNIII----NHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPL 174
           LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISY+KKRKRPP+Q PL
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Csor.00g014030 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.8 bits (652), Expect = 2.7e-68
Identity = 130/184 (70.65%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 5   GSSSNSFVVINNNNNNNNAMNHQ------HSATASSSSSRYENQKRRDWKTFGQYLNNHR 64
           G  +N  ++ NN+++   A   +       S++ S++SSRYENQKRRDW TFGQYL NHR
Sbjct: 15  GGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHR 74

Query: 65  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALV 124
           PPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+
Sbjct: 75  PPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALI 134

Query: 125 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLPPPH 183
           GRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKARG+SY+KK+++     PLP   
Sbjct: 135 GRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRK----RPLPSSS 194

[Close]

BLAST of Csor.00g014030 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.9 bits (642), Expect = 3.9e-67
Identity = 133/187 (71.12%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 11  FVVINNNNNNNNAMNHQHSATASSSS--------------SRYENQKRRDWKTFGQYLNN 70
           F+   N ++N N M    + T ++SS              SRYENQKRRDW TFGQYL N
Sbjct: 7   FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRN 66

Query: 71  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDA 130
           HRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDA
Sbjct: 67  HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDA 126

Query: 131 LVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYD-KKRKRPPSQHPLP 183
           L+GRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISY+ KKRKRPP   PLP
Sbjct: 127 LIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPP--PLP 186

[Close]

BLAST of Csor.00g014030 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.4 bits (625), Expect = 3.6e-65
Identity = 116/143 (81.12%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 35  SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFY 94
           SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+
Sbjct: 22  SSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFF 81

Query: 95  GLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQS 154
           GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+
Sbjct: 82  GLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQA 141

Query: 155 KARGISYDKKRKRPPSQHPLPPP 178
           KARG+SY+KKRKR   Q P   P
Sbjct: 142 KARGVSYEKKRKRVNRQKPQTQP 164

[Close]

BLAST of Csor.00g014030 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-63
Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 15  NNNNNNNNAMNHQHSATASS--SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 74
           +NN N N +++ Q  ++ SS  SSSRYENQKRRDW TF QYL NH PPL+L+ CSGAHVL
Sbjct: 8   HNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVL 67

Query: 75  EFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 134
           +FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 68  DFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAP 127

Query: 135 EANPFGARAVRLYLREVRDLQSKARGISYDKKRKR----------PPSQHPLP 176
           E +PFG+R+VR++LREVRD Q+K+RG+SY+KKRKR          P SQ PLP
Sbjct: 128 ETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLP 180

[Close]

BLAST of Csor.00g014030 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 1.0e-59
Identity = 103/138 (74.64%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 34  SSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPF 93
           ++ SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP+
Sbjct: 27  ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPY 86

Query: 94  YGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQ 153
           +G   PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q
Sbjct: 87  FGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQ 146

Query: 154 SKARGISYD-KKRKRPPS 171
           +KARGI Y+ KKRKRPP+
Sbjct: 147 AKARGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of Csor.00g014030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XAV5	2.2e-67	81.56	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	2.2e-67	81.56	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
O82268	3.8e-67	70.65	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	5.5e-66	71.12	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	4.6e-65	80.14	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of Csor.00g014030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606371.1	2.99e-128	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subs...	[more]
XP_022931179.1	3.50e-127	98.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]	[more]
KAG7036313.1	3.27e-122	96.15	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022995850.1	1.04e-121	96.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_023532602.1	3.30e-119	95.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g014030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETL1	1.69e-127	98.90	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K523	5.05e-122	96.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L7E1	2.86e-105	88.51	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	1.17e-104	87.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	1.17e-104	87.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g014030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	2.7e-68	70.65	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.9e-67	71.12	Protein of unknown function (DUF640)	[more]
AT5G28490.1	3.6e-65	81.12	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.4e-63	68.79	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.0e-59	74.64	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 31..151 e-value: 5.8E-65 score: 217.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 38..165 score: 82.799995
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 9..175
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 9..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g014030.m01	Csor.00g014030.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus