Csor.00g011020 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g011020
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 5153656 .. 5154488 (+)
RNA-Seq ExpressionCsor.00g011020
SyntenyCsor.00g011020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCGTGGGAGATTCATAGTCCAGCCTTATGGCTTCCTGATGAAGATTTGTGCCCCCGATGGAATTGGATCATGTTACCTCCAGGTAAGGATGTATCGTCAGTATATTTTTCTTTTGTTTAGTTACTCTTCCTTCCTAAAACAACTTTTTTTAATTGAATAATTTTGTTTCTTTTATCATCTTCTGCCCGTTTCTTATAATCCCCCCCCTCCCTCAACCCAAATAGGCAAACTCCTGTGTTTGGTCCTGAAGAATTTTGATAGGTTGGATAACCCTATTTTTGGAAGAGGCTATTATTTACCTTCTCATTATTGCCTTGTAGTTAGAAGTTACTGTTGCGTGCACATGGAAACGTATGGATTGATTGGAGCTAACCTTGAAATCGTTCCTCTATTTTTTTGTGATTGCTTGCTGATTTGTTCTACTTGTTCCATTCGTGTCTGTGTAGGTGTGATATCGCTCACGCGTTTGTATCCCGGCAAGTTGTATATTGGCAACTATTATTTGACAGGAAGTTGTAAATGTCTGTCAATCTGGTAGGGGGACCCTACCTCCAGCTGTTGAATAGTTTGTTCCTTGGTAACAGCAAAGAGTAAAAGAATCTACTGTTTAAGGTTGAGATTGGAGTTCCTGAACTTCACAAGGCTATATGTGAATCAATTCGAATGTACTTTGATTTTTTTACAACTGTTTTTTACTTAGTTCATTAGATTATACTTCAAAGACTGGGAGTTTCCTGCCTCTGGGATCAGATAGATCGATGGAGTTCCTGGCCTCATTAGGTGATAATCATTCCTCCCTCGGGTTATTACCAGTGCAAATACAATGA

mRNA sequence

ATGATATCGTGGGAGATTCATAGTCCAGCCTTATGGCTTCCTGATGAAGATTTGTGCCCCCGATGGAATTGGATCATGTTACCTCCAGGTGTGATATCGCTCACGCGTTTGTATCCCGGCAAGTTGTATATTGGCAACTATTATTTGACAGGAAGTTGTAAATGTCTGTCAATCTGTTCATTAGATTATACTTCAAAGACTGGGAGTTTCCTGCCTCTGGGATCAGATAGATCGATGGAGTTCCTGGCCTCATTAGGTGATAATCATTCCTCCCTCGGGTTATTACCAGTGCAAATACAATGA

Coding sequence (CDS)

ATGATATCGTGGGAGATTCATAGTCCAGCCTTATGGCTTCCTGATGAAGATTTGTGCCCCCGATGGAATTGGATCATGTTACCTCCAGGTGTGATATCGCTCACGCGTTTGTATCCCGGCAAGTTGTATATTGGCAACTATTATTTGACAGGAAGTTGTAAATGTCTGTCAATCTGTTCATTAGATTATACTTCAAAGACTGGGAGTTTCCTGCCTCTGGGATCAGATAGATCGATGGAGTTCCTGGCCTCATTAGGTGATAATCATTCCTCCCTCGGGTTATTACCAGTGCAAATACAATGA

Protein sequence

MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSICSLDYTSKTGSFLPLGSDRSMEFLASLGDNHSSLGLLPVQIQ
Homology
[Close]
BLAST of Csor.00g011020 vs. NCBI nr
Match: KAG6605509.1 (hypothetical protein SDJN03_02826, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (563), Expect = 5.81e-73
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSICS 60
           MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSICS
Sbjct: 1   MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSICS 60

Query: 61  LDYTSKTGSFLPLGSDRSMEFLASLGDNHSSLGLLPVQIQ 100
           LDYTSKTGSFLPLGSDRSMEFLASLGDNHSSLGLLPVQIQ
Sbjct: 61  LDYTSKTGSFLPLGSDRSMEFLASLGDNHSSLGLLPVQIQ 100

[Close]
BLAST of Csor.00g011020 vs. NCBI nr
Match: KAG7035446.1 (CCR4-NOT transcription complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (345), Expect = 4.89e-35
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1    MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSI 58
            MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSI
Sbjct: 1149 MISWEIHSPALWLPDEDLCPRWNWIMLPPGVISLTRLYPGKLYIGNYYLTGSCKCLSI 1206

The following BLAST results are available for this feature:
BLAST of Csor.00g011020 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g011020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605509.15.81e-73100.00hypothetical protein SDJN03_02826, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035446.14.89e-35100.00CCR4-NOT transcription complex subunit 4, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Csor.00g011020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g011020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g011020.m01Csor.00g011020.m01mRNA