Csor.00g008210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g008210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	selenoprotein F-like
Location	Csor_Chr08: 1061518 .. 1066523 (+)
RNA-Seq Expression	Csor.00g008210
Synteny	Csor.00g008210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCTTGGATTAGAGGCGTTTGGTTCAGGCATGAACAAGAGGTGGTGAGTTTTGAATAACCACACACTCTCCAAGATATTCTCATTTAAGACCTCACTGTTTCACACCACACCACCTAAGAGCTTCAAACCTTCCCCCCCCACCCCCACCCCCCTTTTTTGGCCTCCAATTCCACTCAATCACTTACCCAAATATGCCTCCTCCTCCTCTCTCACCCTCTTGTCATTTTATCCTTTTCGATCGACACGGGACCCTCAATCCACAGACCCAACGTCCTTGTTGTCACATCGCCACTTAATCTTGTCTGTGTCTCACTGTTTTAAAACATGTTTTCTAGGAATAGGTTTTCATACTCCTATAAAGAATGTTTCGTTCTTCTCTCCTGTCCGTGTGAGATCTCCTAGATTATATTGCAGAAGAATGTCATTACGTGTCTGAATCTCGATGATCATGGAGATGGGACATCGGGACCCTCAATCCACAGACCCAACGTCCTTGTTGTCACATCGCCACTTAATCTTGTCTGTGTCTCATTGTTTTAAAACATGTTTTCTAGGAATAGGTTTTCATACTCCTATAAAGAATGTTTGGTTCTTCTCTCCTGTCCGTGTGAGATCTCCTAGATTATATTGCAGAAGAATGTCATTACGTGTCTGAATCTCGATGATCATGGAGATGGGACATGGGGCATGTCTTTTTCAAGTGGGATATTCCTAAACTTTTCATCCTCTTGCTTCAATTATGACTCACAAAAGCTATGGATTTTGATTCATAAAACCACAAAAGTCTTCTAAAATCTTGTTTCTCACATCATAAATCTTTAATATGAATATTTATTTATTTATTTGTAAAAGAAGCTATGAATTCACCTTTTATTACGTCATTTTTGAATTGGGTTTTCAAAAAATAAAAAAATTAAATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCCACCTTTTAAGGAGGAATAATGATGGGCATGCATGTTATTCATAATTTAGCAATGGTTGGCATCATCATGATTAACGTTGTGCGTTGTGGATATGCTCTAAAATTCACAACTCCTTAAAAGCTGCTACCAACCTAAAAGCGGATATGATGCGATTGGGTTAGCTTCGATTTTATTTTCGGGTTGATCAGGTTAGTCTAGTTGACCCGACAAAAAAAATGTCAACTTCCAAACCGACCCAAATTTTCAGTTTTCCAAAAGTTCAATCTAACCCACGAGTAGTTTAGGTCGGTTGAGATCTCTGATCATATGAACACCCTAAATTCAAAACCGAACATAACTATAGGTATAAACTATCAGTATTATGAAACATAAACCAACTTCCTAATCTAAGAGACTCGTGTCTAATTCTTTTTCAATAGATTTTCTTAAAGAACACATTGTGATTCAATCTTGAATATTAAAATAATTTAATTTATATCATTACATGTGTTAAGTTGCATGTGACATAATTATTCTACCACATGTTTAATTACTTTATAAATAGGTATATTACTATTATTAAGTTCAAATTAATTAAACTTTTAAACACTATAGCGGTGTATTATTTATTTAATAACTTTATTTATGTCTTTTAAATATTAAAATTTATAACCTCTTTTAATTTCTACGAGCCAATATGTCACAACTTTAATTTTTAACGGTTAAGTTGAAATGTAATGTTTTCGAGACATGTGGTCCAATCGGCCCGAATGCCTATAAATTTAAATTTTAATTTTAAAGTTATATTTGGTTGGTCAATAAAGGAGAGTTTGAAAATTAAAGCCTTTTTCTTTATGAATATTGTTTTTTCAATATTGAATTGAATTTAGGAACTTCCTTAAAAGAATATTTTGACCCGAAAAAATTACGAATGAACCGAGATCACGTTCGAATGACGGTAATTATGTGGATATGAAAGTGTACAAAATTTATGGTAAAAAAGGCTTCAAACATGGCTGCTGATTCAATCTCGACTTTCCCGACTTTTCCACATGGATCTTATCCCTTTTCTTTCCAACCCTGTACTTATTTTCTTTTTGACTTTTTGACCCGTTACCAAAATTCACATCGAAATCACGTTAGAATCGGGTTAACTACGCTTTCAGTTGTAGAGAGCGTGATTTTATTATTATTATTATTATTTTTTTCAGTTAGTCCTTACACTCTCGATTCTTATAATATTTTGATGTTAATTTTTATTTTCGTAAGGACAGTGGCTCACAATCGAGTATCTTTTTAATTTTTTTAAAAAAATTTAAGAATATTATTGAAATTTTTTAAAACCTAACCCTATAAAAATTTAGATGTATTTTTTTTTTTTTTTTGTTAATTTTGCATTAAATAAAATTTCAAATTAATTAATTTTTAATTTAATTTTTTTTTTAACAAAAACTAATTTTATTAATTAAAAAACCCCATAAAATAAAAAAAGAAATTGATTTAATTTGTTAAAGAGAACGAAAAAATAATAATGATACTTTCAGTGAATTTTCAGATCGTCTGGAGACTTAGCTTCTTCCCCACGGTCGACGGTCGACACAGAGATGCAGCTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGGATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATGCGCTCGATTTACAGATCACACGGTTTTTCGAAACGCATGATTGATTCGGTTTTGAATTTATTTCTGTATTACTACATCTCCATTTTTCGTGAATTTTATCGTGAATTCGCAGCAGCGTAATGAATTTTGTTCGTTTGTTTTCTTAATTCTCCGCGTTTCTTTTTCTTTTGAACGATTGATTGTTCGCCTTGTGGTTGATTTCGATTATGGATTTCTATTGCTTGATTTGGATTTTGGAAACAGGAAATAGGTTGCAAGATGTTGAGTTAAAATAGCCTGTTGCCTTTTAGCATCATAGTTAAACAACGTGCGAGTTTAGATTTGAGTTATGCAGAAAAATCTGAAAAAATGTTTTTAGTACCAAATGACAATTCTGGCAACACTGGATTTGTGAAGGCTACATTATGACTTCAAATAGTCTTTATCCAAAATCCAAATGAAGAAAATAACTGATAGTACTCTGAATCTGCAGTTGTCTCGTGTCAGTTTATGTAATGCAATAGTTTTGAAGTGCATTGTTCTTAAAATTACGTGCTGTACTCATTTCCAAAGTTGTTCTGCAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATTTTATAGATGTGCTGATATCTCGAGTGTAAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAGCCTCTCCCTAGCAGACGCGTTTTAAAAATCTTGAGGGGAATCCCGGAAGGGAAAGCCCAAAGAAGACAGTATCTACTAGAGGTGGGCTTAGATTGTTACGTCGAGACTGAATTTGATTTGCTATTCCATTGTGAATAGTGTATTGTCCATGTGGTAGACATATCGATTGAAAACACATTAATTTAACATAGTATGCAGGATTAACAATTTTTGCCTCCATGAAATTATAAAAATTGTGGTTCTAAATAAGGTTTCAGGGTGTACGAGAAGTGTCATAGTGATCAATTCTAAAGGAATTAGACGACTCTATGTAACAACTCAAGCCCACCTCTAGCAGATATTGTCCTTTTTGGGCTTTCTCTTTCGGGCTTCCCTTCAAGGTTTTTAAAATGTGTCTGCTAGGGAGAGGTTTCCACACCCTTAAAAAGAATATTTCATTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACTCCCCTTCAGGGTCCAGCATCCTCGCTGGTACTTGTTCCCCTCTTCTATTGATGTGCGACCCCCCAATATCAACTAGCGGTGGGTTTGGACTGTTACACTCTATTTGGTCAAATACCTTGCAACATACTCCCACTTTTTTCGTTTACAGTATCTCAAACCAAATTTCTGGTTCCAAATTTTTTGTCCACCATGGTTGCTGTTTAACTAAACAAAGGATGAAAGCCAGTTAACTAAATTCGTTAACTGCAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGTAACTTCTAAGTGCCTAAAATTTTCCACTATAATACCTATGGAGAGACCCTGTTAAGGTCGTGAATGTTGATGTTTCTTTCTTATGAGAATCAAACTTGTAATAAGGTACAAAAGAATACAAAAAGAAATGCTTAAACAAAAAAGTGAAACTAGAGTCTGAAAGAAGAGCTCTAATCATTAAGAATAAGAGATAAGAGATGGTTACAAAATACATTTGGAGTTAGATAGACCCTCGAAGAGAGATTAAATCTAGCCAAAAGCCGCATCTCCCTCCAAGATGATCCACTTTATGCCTCTAAAACTCTCTAATTTCTGTTGTAAATGTTTTGAGGTTTGCCGTACTGAACGACTTGTTATCTCGTCTAGAAGAACGCTTGCAAGCATCCATAACATAGAGTTCATATGATATCTTTTAGATCAAAATCATGGAGAATATGTGTAGGTTAAGATGGTGTACAGAGACATAAATTTTGCTTTAGCTTCTGGTTAATGACCATTTATAATTGATATGTCACATAAGATAACACAAGAAGTTTTTTTCCCCCCTTTTTTGCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGACAAGGTTAAGCTATCTTCAGCAATTTAA

mRNA sequence

ATGCACCTTGGATTAGAGGCGTTTGGTTCAGGCATGAACAAGAGGTCGTCTGGAGACTTAGCTTCTTCCCCACGGTCGACGGTCGACACAGAGATGCAGCTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGGATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGACAAGGTTAAGCTATCTTCAGCAATTTAA

Coding sequence (CDS)

ATGCACCTTGGATTAGAGGCGTTTGGTTCAGGCATGAACAAGAGGTCGTCTGGAGACTTAGCTTCTTCCCCACGGTCGACGGTCGACACAGAGATGCAGCTATTCACCGATGTAAAGAGGCCCGCTACGGTGGTGGGGATGGCGGCATGGGCGGCGGCGATAATATTCATTGCGTCGATGCCGTTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGAGAATGTGAGGATCTAGGTTTCACTGGCCTCGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGGCAGACTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCTTCTGTTAAGATTCAATATATCTTCAACTCTCCGCCGAAGCTGACTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATTGATAACTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGACAAGGTTAAGCTATCTTCAGCAATTTAA

Protein sequence

MHLGLEAFGSGMNKRSSGDLASSPRSTVDTEMQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI

Homology

[Close]

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 68  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 127
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 128 VCMRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 187
           VC  KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 188 HILQFLQDKVK 198
            + +FL +K++
Sbjct: 152 SVEEFLSEKLE 160

[Close]

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 95.9 bits (237), Expect = 5.6e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 68  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 127
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 128 VCMRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 187
           VC  KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 188 HILQFLQDKVK 198
            + +FL +K++
Sbjct: 155 SVEEFLSEKLE 163

[Close]

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 9.5e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 68  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 127
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 128 VCMRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 187
           VC  KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 188 HILQFLQDKVK 198
            + +FL +K++
Sbjct: 143 SVEEFLSEKLE 151

[Close]

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 68  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 127
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 128 VCMRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 187
           VC  KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 188 HILQFLQDKVK 198
            + +FL +K++
Sbjct: 152 SVEEFLSEKLQ 160

[Close]

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 68  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLE 127
           + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILE 91

Query: 128 VCMRKLVFYPEIVGFIEEEKDK-FPSVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKRE 187
           VC  KL  +P++  F+  +K K F  ++I+Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 188 HILQFLQDKVK 198
            + +FL +K++
Sbjct: 152 SVEEFLSEKLE 160

[Close]

BLAST of Csor.00g008210 vs. NCBI nr
Match: KAG6592972.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407 bits (1045), Expect = 3.85e-143
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MHLGLEAFGSGMNKRSSGDLASSPRSTVDTEMQLFTDVKRPATVVGMAAWAAAIIFIASM 60
           MHLGLEAFGSGMNKRSSGDLASSPRSTVDTEMQLFTDVKRPATVVGMAAWAAAIIFIASM
Sbjct: 1   MHLGLEAFGSGMNKRSSGDLASSPRSTVDTEMQLFTDVKRPATVVGMAAWAAAIIFIASM 60

Query: 61  PLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKIT 120
           PLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKIT
Sbjct: 61  PLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLKCCTEDSDDATSKIT 120

Query: 121 YSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIRI 180
           YSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIRI
Sbjct: 121 YSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLTLLDDEGQHKESIRI 180

Query: 181 DNWKREHILQFLQDKVKLSSAI 202
           DNWKREHILQFLQDKVKLSSAI
Sbjct: 181 DNWKREHILQFLQDKVKLSSAI 202

[Close]

BLAST of Csor.00g008210 vs. NCBI nr
Match: KAG7025384.1 (Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348 bits (892), Expect = 2.73e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. NCBI nr
Match: XP_023513576.1 (selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347 bits (889), Expect = 7.83e-120
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQ+FTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. NCBI nr
Match: XP_022960129.1 (selenoprotein F-like [Cucurbita moschata])

HSP 1 Score: 341 bits (875), Expect = 1.07e-117
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQLF DVK+PATVV MAAWAAAIIF+ASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. NCBI nr
Match: XP_023004122.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 340 bits (873), Expect = 2.15e-117
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQLF DVK+PATVV MAAW AAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVK+QYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL
Match: A0A6J1HA08 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1)

HSP 1 Score: 341 bits (875), Expect = 5.16e-118
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQLF DVK+PATVV MAAWAAAIIF+ASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1)

HSP 1 Score: 340 bits (873), Expect = 1.04e-117
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQLF DVK+PATVV MAAW AAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVK+QYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 305 bits (780), Expect = 1.56e-103
Identity = 150/171 (87.72%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQL   V  PAT V +   AAAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELVADCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202
           SVK+QY FNSPPKL LLDDEGQHKESIRIDNWKREH LQFLQ+KVK SSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 2.40e-102
Identity = 149/170 (87.65%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQL T VK PAT+V MA    AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMAT---AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELV DCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 201
           SV +QY FNSPPKL LLDDEGQHKESIRIDNWKREHILQFL++KVK  S+
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS 167

[Close]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 5.65e-101
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91
           MQL T VK PAT+V MA    AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMAT---AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151
           AEYIKDQELV DCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEEEK +FP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFP 120

Query: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 201
           SV +QY FNSPPKL LLDDEGQHKESIRIDNWKREHILQFL++KVK  S+
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS 167

[Close]

BLAST of Csor.00g008210 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-65
Identity = 111/155 (71.61%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 47  MAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVADCLK 106
           M   +A +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DCLK
Sbjct: 9   MVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLK 68

Query: 107 CCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFPSVKIQYIFNSPPKLT 166
           CC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK+KFPSVK+QYIFNSPPKL 
Sbjct: 69  CCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLI 128

Query: 167 LLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 202
           +LD++G+HKESIRIDNWKREH+LQ++++KVK ++A
Sbjct: 129 MLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of Csor.00g008210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8YXY3	3.3e-19	37.40	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	5.6e-19	37.40	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	9.5e-19	37.40	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
A1Z623	1.2e-18	37.40	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q923V8	1.4e-17	36.64	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Csor.00g008210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592972.1	3.85e-143	100.00	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025384.1	2.73e-120	100.00	Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023513576.1	7.83e-120	99.42	selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein ...	[more]
XP_022960129.1	1.07e-117	97.66	selenoprotein F-like [Cucurbita moschata]	[more]
XP_023004122.1	2.15e-117	97.08	selenoprotein F-like [Cucurbita maxima]	[more]

BLAST of Csor.00g008210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HA08	5.16e-118	97.66	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1	[more]
A0A6J1KPJ2	1.04e-117	97.08	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1	[more]
A0A1S3CC00	1.56e-103	87.72	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A6J1GQK6	2.40e-102	87.65	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A6J1JXH9	5.65e-101	87.06	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]

BLAST of Csor.00g008210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	1.8e-65	71.61	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 123..196 e-value: 3.3E-26 score: 93.3
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 124..196 e-value: 1.8E-27 score: 95.3
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 63..200
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 63..200
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 107..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g008210.m01	Csor.00g008210.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity