Csor.00g007630 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g007630
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionEPIDERMAL PATTERNING FACTOR-like protein 9
LocationCsor_Chr08: 1442308 .. 1442917 (-)
RNA-Seq ExpressionCsor.00g007630
SyntenyCsor.00g007630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAGCTGCGAAACCACTTCTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGTTTCTCTCTCTCTTTTTCTCTCTCTCGGTCTACGTTCTTCGTCGCTTGATTTACTTTATTCATCTTCTCTCCGTATCTTTTTTTCGCGTTCAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGGTTAGTTGTTCGTACTATCCGGACGATAAATCTTTTTCGATTTTTATCATTTAGGAATTCGCGTCTCGTTTCTTGATCTCTGTTTCGCGTTTCTGATCTCTTGAATGTACTTTTAAAGTAATCGTTAAATGCTCGAGACTCGAAGTATAATGTGTTTATTTTTTATGGAAATTTTAAAAAATTCAGATGAGAAATTCGAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAA

mRNA sequence

ATGGCGAAAGCTGCGAAACCACTTCTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCGAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAA

Coding sequence (CDS)

ATGGCGAAAGCTGCGAAACCACTTCTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGAACTTTTCGCTAAACCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCGAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAATGACCCGATCAATAGTGCTTATCACTATAGATGTGTTTGTCATAGGTAA

Protein sequence

MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Homology
BLAST of Csor.00g007630 vs. ExPASy Swiss-Prot
Match: Q9SV72 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.1e-24
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 47  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 106
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 107 HYRCVCHR 110
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

BLAST of Csor.00g007630 vs. NCBI nr
Match: KAG6593029.1 (EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (555), Expect = 1.88e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60
           MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS
Sbjct: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60

Query: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109

BLAST of Csor.00g007630 vs. NCBI nr
Match: XP_022959844.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata])

HSP 1 Score: 213 bits (543), Expect = 1.31e-69
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MAKAAKPLL-LLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60
           MAKAAKPLL LLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60

Query: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

BLAST of Csor.00g007630 vs. NCBI nr
Match: XP_023514879.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (541), Expect = 2.49e-69
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60
           MAKAAKPLLLLLLL ALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS
Sbjct: 1   MAKAAKPLLLLLLL-ALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60

Query: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

BLAST of Csor.00g007630 vs. NCBI nr
Match: XP_023004190.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita maxima])

HSP 1 Score: 207 bits (527), Expect = 3.40e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60
           MAKAAKPLLLLLLL ALILCSLCSTMALKGRFSTED++FAK LPQFRSVQTTIAPEMRNS
Sbjct: 1   MAKAAKPLLLLLLL-ALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPEMRNS 60

Query: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

BLAST of Csor.00g007630 vs. NCBI nr
Match: XP_038899071.1 (EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida])

HSP 1 Score: 151 bits (381), Expect = 6.02e-45
Identity = 85/114 (74.56%), Postives = 91/114 (79.82%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPE---- 60
           MAKAAKP+ +LLLLL LI+  L STMA++G FST         PQF S+Q TIA E    
Sbjct: 1   MAKAAKPVSVLLLLLTLIMTFLFSTMAVQG-FSTRHP------PQFFSLQATIASEGKNE 60

Query: 61  -MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
            MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 107

BLAST of Csor.00g007630 vs. ExPASy TrEMBL
Match: A0A6J1H996 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC111460784 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 6.36e-70
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MAKAAKPLL-LLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60
           MAKAAKPLL LLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN
Sbjct: 1   MAKAAKPLLRLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRN 60

Query: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  SRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 110

BLAST of Csor.00g007630 vs. ExPASy TrEMBL
Match: A0A6J1KTW3 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111497591 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 1.65e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNS 60
           MAKAAKPLLLLLLL ALILCSLCSTMALKGRFSTED++FAK LPQFRSVQTTIAPEMRNS
Sbjct: 1   MAKAAKPLLLLLLL-ALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPEMRNS 60

Query: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  RRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 108

BLAST of Csor.00g007630 vs. ExPASy TrEMBL
Match: A0A6J1DR94 (uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023601 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 7.38e-38
Identity = 80/117 (68.38%), Postives = 87/117 (74.36%), Query Frame = 0

Query: 1   MAKAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELF-AKPLP-QFRSVQTTIAPE-- 60
           MAKAAKP  +LLLLL LI+      +A++G  + EDEL  AK LP QF SV T       
Sbjct: 1   MAKAAKPASVLLLLLTLII-----VVAVQGFTTGEDELLLAKALPPQFSSVSTMANQGKN 60

Query: 61  --MRNSR--RLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
             +RNSR  RLMIGSTAP CTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  KMLRNSRTRRLMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 112

BLAST of Csor.00g007630 vs. ExPASy TrEMBL
Match: A0A0A0KA17 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G368090 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 1.04e-36
Identity = 64/90 (71.11%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 26  MALKGRFSTEDELFAKPLPQFRSVQTTIAP------EMRNSRRLMIGSTAPICTYNECRG 85
           MA++G FST D    +P+PQF S+Q TI P       +R  RR+MIGSTAP CTYNECRG
Sbjct: 1   MAVQG-FSTRD----RPVPQFSSLQPTILPLEGRKERLRKWRRVMIGSTAPTCTYNECRG 60

Query: 86  CKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           CKYKCRAEQVPVEGNDPINSAYHYRCVCHR
Sbjct: 61  CKYKCRAEQVPVEGNDPINSAYHYRCVCHR 85

BLAST of Csor.00g007630 vs. ExPASy TrEMBL
Match: A0A445BNH1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g045950 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 1.27e-32
Identity = 65/107 (60.75%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 3   KAAKPLLLLLLLLALILCSLCSTMALKGRFSTEDELFAKPLPQFRSVQTTIAPEMRNSRR 62
           K AK LLL   LL L    +   +  KG   + +  F+    Q +  Q+    +MRNSRR
Sbjct: 5   KLAKLLLLFFTLLTLATPKVIQGIQTKGLLVSHEHSFS----QAQIEQSLKGLKMRNSRR 64

Query: 63  LMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR 109
           LMIGSTAP CTYNECRGCKYKCRAEQVPVEGNDPINS YHYRCVCHR
Sbjct: 65  LMIGSTAPTCTYNECRGCKYKCRAEQVPVEGNDPINSPYHYRCVCHR 107

BLAST of Csor.00g007630 vs. TAIR 10
Match: AT4G12970.1 (stomagen )

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-25
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 47  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 106
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 107 HYRCVCHR 110
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SV724.1e-2473.53EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Match NameE-valueIdentityDescription
KAG6593029.11.88e-71100.00EPIDERMAL PATTERNING FACTOR-like protein 9, partial [Cucurbita argyrosperma subs... [more]
XP_022959844.11.31e-6999.09EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita moschata][more]
XP_023514879.12.49e-6999.08EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita pepo subsp. pepo][more]
XP_023004190.13.40e-6796.33EPIDERMAL PATTERNING FACTOR-like protein 9 [Cucurbita maxima][more]
XP_038899071.16.02e-4574.56EPIDERMAL PATTERNING FACTOR-like protein 9 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1H9966.36e-7099.09EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1KTW31.65e-6796.33EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1DR947.38e-3868.38uncharacterized protein LOC111023601 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0KA171.04e-3671.11EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Cucumis sativus OX=3659 GN=Csa_7G3... [more]
A0A445BNH11.27e-3260.75Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g045950 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G12970.12.9e-2573.53stomagen [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038572Stomagen, C-terminal domain superfamilyGENE3D2.20.25.390Stomagencoord: 65..109
e-value: 5.2E-31
score: 108.3
IPR044858Stomagen, C-terminal domainPFAMPF16851Stomagencoord: 59..108
e-value: 1.4E-33
score: 114.6
IPR031753StomagenPANTHERPTHR37239EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9coord: 5..109
NoneNo IPR availablePANTHERPTHR37239:SF1EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9coord: 5..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g007630.m01Csor.00g007630.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000123 positive regulation of stomatal complex development