Csor.00g006710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g006710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr08: 2037761 .. 2038153 (-)
RNA-Seq ExpressionCsor.00g006710
SyntenyCsor.00g006710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTATGGAATATGGCCTGGCCCATTCTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTAG

mRNA sequence

ATGGCCTTATGGAATATGGCCTGGCCCATTCTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTAG

Coding sequence (CDS)

ATGGCCTTATGGAATATGGCCTGGCCCATTCTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTCGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCTATGGCCTTATGAAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTGGCCCATTTTGGAGAATCAATGGCCTTATGGAATATGGGCTAG

Protein sequence

MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPYGIWAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHFGESMALWNMG
Homology
BLAST of Csor.00g006710 vs. NCBI nr
Match: KAG6593121.1 (hypothetical protein SDJN03_12597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310 bits (794), Expect = 3.06e-107
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPYGI 60
           MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPYGI
Sbjct: 1   MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPYGI 60

Query: 61  WAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHF 120
           WAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHF
Sbjct: 61  WAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHF 120

Query: 121 GESMALWNMG 130
           GESMALWNMG
Sbjct: 121 GESMALWNMG 130

BLAST of Csor.00g006710 vs. NCBI nr
Match: KAG6593119.1 (hypothetical protein SDJN03_12595, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276 bits (707), Expect = 9.29e-94
Identity = 120/130 (92.31%), Postives = 121/130 (93.08%), Query Frame = 0

Query: 1   MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPYGI 60
           MAL NM WPILENQWPYGIWAGPF RI GLM+YGLAHFGESMALWNMGWPILEN WPY I
Sbjct: 12  MALCNMGWPILENQWPYGIWAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEI 71

Query: 61  WAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHF 120
           WAGPFWRINGLMEYGLAHFGESMAL NMGWPILENLWPYEIWA PFWRINGLMEYGLAHF
Sbjct: 72  WAGPFWRINGLMEYGLAHFGESMALRNMGWPILENLWPYEIWASPFWRINGLMEYGLAHF 131

Query: 121 GESMALWNMG 130
           GESMAL NMG
Sbjct: 132 GESMALSNMG 141

BLAST of Csor.00g006710 vs. NCBI nr
Match: KAG6593120.1 (hypothetical protein SDJN03_12596, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263 bits (673), Expect = 3.57e-85
Identity = 122/186 (65.59%), Postives = 123/186 (66.13%), Query Frame = 0

Query: 1   MALWNMAWPILENQWPYGIWAGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQ----- 60
           MALWNM WPILENQWPYGIWAGPF RI GLM+YGLAHFGESMA  NMGWPILENQ     
Sbjct: 180 MALWNMGWPILENQWPYGIWAGPFWRINGLMEYGLAHFGESMAFMNMGWPILENQSMAHF 239

Query: 61  ---------------------------------------------------WPYGIWAGP 120
                                                              WPYGIWAGP
Sbjct: 240 YGIWAGPFWRINGLMEYGLAHFGEWPYGIWAGPFWRINGLMEYGLAILENQWPYGIWAGP 299

Query: 121 FWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLAHFGESM 130
           FWRINGLMEYGLAHFGESMALWNMGWPILEN WPY IWAGPFWRINGLMEYGLAHFGESM
Sbjct: 300 FWRINGLMEYGLAHFGESMALWNMGWPILENQWPYGIWAGPFWRINGLMEYGLAHFGESM 359

BLAST of Csor.00g006710 vs. NCBI nr
Match: RMB90254.1 (hypothetical protein DUI87_33390 [Hirundo rustica rustica])

HSP 1 Score: 59.7 bits (143), Expect = 2.44e-07
Identity = 34/132 (25.76%), Postives = 60/132 (45.45%), Query Frame = 0

Query: 2   ALWNMAWPILENQWPYGIW---AGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPY 61
            +W++ + I +    YGIW    G +   YG+    +   G  + +W+MG+ I +  + Y
Sbjct: 11  GIWDVGYGIWDTG--YGIWDMGCGIWDMGYGIWDMDM---GYGIRIWDMGYGIWDMGYGY 70

Query: 62  GIWAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLA 121
           GIW   +   +  M YG+   G    +W+MG+ I +    Y IW        G+ + G  
Sbjct: 71  GIWDMGYGIWDMDMGYGIWDMGYGYGIWDMGYGIWDMDMGYGIWDMDMGYGYGIWDMGYG 130

Query: 122 HFGESMALWNMG 130
            +     +W+MG
Sbjct: 131 IWDMGHGMWDMG 137

BLAST of Csor.00g006710 vs. NCBI nr
Match: MBV6627723.1 (hypothetical protein [Rivularia sp. (in: Bacteria)])

HSP 1 Score: 58.5 bits (140), Expect = 4.22e-07
Identity = 33/119 (27.73%), Postives = 55/119 (46.22%), Query Frame = 0

Query: 10  ILENQWPYG------------IWAGPFRRIYGLMKYGLAH----FGESMA-LWNMGWPIL 69
           ++E QW  G             W G F    G   Y +A+    F + ++ LWN GW ++
Sbjct: 64  VVEQQWQVGGYRLTNVEYGDGTWFGTFEENSGANNYSIANSFTEFQQDISQLWNKGWELV 123

Query: 70  ENQWPYGIWAGPFWRINGLMEYGLA----HFGESMA-LWNMGWPILENLWPYEIWAGPF 106
           + ++  G+W G F  + GL  Y  A     F E++  +WN G+ +++  +   IW G F
Sbjct: 124 DVEYGDGVWFGTFSDVPGLNAYTTATSNGEFKENIENMWNQGYDLIDIEYGDGIWFGTF 182

BLAST of Csor.00g006710 vs. ExPASy TrEMBL
Match: A0A3M0INB6 (Uncharacterized protein OS=Hirundo rustica rustica OX=333673 GN=DUI87_33390 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.18e-07
Identity = 34/132 (25.76%), Postives = 60/132 (45.45%), Query Frame = 0

Query: 2   ALWNMAWPILENQWPYGIW---AGPFRRIYGLMKYGLAHFGESMALWNMGWPILENQWPY 61
            +W++ + I +    YGIW    G +   YG+    +   G  + +W+MG+ I +  + Y
Sbjct: 11  GIWDVGYGIWDTG--YGIWDMGCGIWDMGYGIWDMDM---GYGIRIWDMGYGIWDMGYGY 70

Query: 62  GIWAGPFWRINGLMEYGLAHFGESMALWNMGWPILENLWPYEIWAGPFWRINGLMEYGLA 121
           GIW   +   +  M YG+   G    +W+MG+ I +    Y IW        G+ + G  
Sbjct: 71  GIWDMGYGIWDMDMGYGIWDMGYGYGIWDMGYGIWDMDMGYGIWDMDMGYGYGIWDMGYG 130

Query: 122 HFGESMALWNMG 130
            +     +W+MG
Sbjct: 131 IWDMGHGMWDMG 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593121.13.06e-107100.00hypothetical protein SDJN03_12597, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593119.19.29e-9492.31hypothetical protein SDJN03_12595, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593120.13.57e-8565.59hypothetical protein SDJN03_12596, partial [Cucurbita argyrosperma subsp. sorori... [more]
RMB90254.12.44e-0725.76hypothetical protein DUI87_33390 [Hirundo rustica rustica][more]
MBV6627723.14.22e-0727.73hypothetical protein [Rivularia sp. (in: Bacteria)][more]
Match NameE-valueIdentityDescription
A0A3M0INB61.18e-0725.76Uncharacterized protein OS=Hirundo rustica rustica OX=333673 GN=DUI87_33390 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g006710.m01Csor.00g006710.m01mRNA