Csor.00g006290 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g006290
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionProtein no-on-transient A-like
LocationCsor_Chr08: 2311679 .. 2311999 (-)
RNA-Seq ExpressionCsor.00g006290
SyntenyCsor.00g006290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGATTAAAGCCCTACTTTCCATTGCTCTTATCGCTCTTCTCTTGTTCTTCGAATCCCTTCCAACTTCCGCCGCCGTTCACCGCGGGGCTTCCACTTCTCTTGCTGGAATACTTCGCCGGAACATCGTACAGACGACGGCGGATCATCATCAAGTTGCAGAGAAGAAGTTCAACGTTCATATCAAAAGGAGGATGCGGATGCGACCTGTGCTAATTGGCCGCCCTAAGACATCGGCGGCGAATCGGAGCCGAGAAGCGTTCTGTGGCGTTGGATCTATGCTGTGTATCTTCGTTCTTTTGGGATTGTTCTTGTAA

mRNA sequence

ATGGCAGCGATTAAAGCCCTACTTTCCATTGCTCTTATCGCTCTTCTCTTGTTCTTCGAATCCCTTCCAACTTCCGCCGCCGTTCACCGCGGGGCTTCCACTTCTCTTGCTGGAATACTTCGCCGGAACATCGTACAGACGACGGCGGATCATCATCAAGTTGCAGAGAAGAAGTTCAACGTTCATATCAAAAGGAGGATGCGGATGCGACCTGTGCTAATTGGCCGCCCTAAGACATCGGCGGCGAATCGGAGCCGAGAAGCGTTCTGTGGCGTTGGATCTATGCTGTGTATCTTCGTTCTTTTGGGATTGTTCTTGTAA

Coding sequence (CDS)

ATGGCAGCGATTAAAGCCCTACTTTCCATTGCTCTTATCGCTCTTCTCTTGTTCTTCGAATCCCTTCCAACTTCCGCCGCCGTTCACCGCGGGGCTTCCACTTCTCTTGCTGGAATACTTCGCCGGAACATCGTACAGACGACGGCGGATCATCATCAAGTTGCAGAGAAGAAGTTCAACGTTCATATCAAAAGGAGGATGCGGATGCGACCTGTGCTAATTGGCCGCCCTAAGACATCGGCGGCGAATCGGAGCCGAGAAGCGTTCTGTGGCGTTGGATCTATGCTGTGTATCTTCGTTCTTTTGGGATTGTTCTTGTAA

Protein sequence

MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL
Homology
BLAST of Csor.00g006290 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (500), Expect = 3.70e-63
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60
           MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60

Query: 61  VHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
           VHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL
Sbjct: 61  VHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106

BLAST of Csor.00g006290 vs. NCBI nr
Match: KAG7025561.1 (E3 ubiquitin-protein ligase MIEL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160 bits (406), Expect = 2.43e-45
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60
          MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN
Sbjct: 1  MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60

Query: 61 VHIKRRMRMRPVLIGRPKTSAANRSREA 88
          VHIKRRMRMRPVLIGRPKTS ANRSREA
Sbjct: 61 VHIKRRMRMRPVLIGRPKTSKANRSREA 88

BLAST of Csor.00g006290 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 2.43e-22
Identity = 66/114 (57.89%), Postives = 80/114 (70.18%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----- 60
           MAA+K+L+S+AL+ALLLF ESL  SA    G S SL G+LRRN++QT A  HQ+A     
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAA--HQIADNSVE 60

Query: 61  ---EKKFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
              E+K NVHIKRRMR  PV  G  ++SAANRSR A  GVGS+L   V+LGLFL
Sbjct: 61  SSPERKMNVHIKRRMR--PVATG-TRSSAANRSRIASIGVGSVL---VVLGLFL 106

BLAST of Csor.00g006290 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.14e-16
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60
           MAAIK+LL I+L+ALL F ESL TSAA  RGAS S+ G+LRRN++QT       +E K N
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60

Query: 61  VHIKRRM--RMRPVLIGRPKT----SAANRSREAFCGVGSML 96
           VHIKR    R+RPV  G   T    SAA+RS+ A  G+G +L
Sbjct: 61  VHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102

BLAST of Csor.00g006290 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 5.08e-16
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEK--- 60
           MA IK+L+SIAL+ALLL FE LP SAA H  A + LAG+ R + +QT A+ HQVAE    
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQT-AERHQVAENGIG 122

Query: 61  ---KFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
               F   I+RR R        P  S+AN SR +  GVGS+LC+  + GLFL
Sbjct: 123 NQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

BLAST of Csor.00g006290 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.04e-16
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60
           MAAIK+LL I+L+ALL F ESL TSAA  RGAS S+ G+LRRN++QT       +E K N
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60

Query: 61  VHIKRRM--RMRPVLIGRPKT----SAANRSREAFCGVGSML 96
           VHIKR    R+RPV  G   T    SAA+RS+ A  G+G +L
Sbjct: 61  VHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102

BLAST of Csor.00g006290 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.46e-16
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEK--- 60
           MA IK+L+SIAL+ALLL FE LP SAA H  A + LAG+ R + +QT A+ HQVAE    
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQT-AERHQVAENGIG 122

Query: 61  ---KFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
               F   I+RR R        P  S+AN SR +  GVGS+LC+  + GLFL
Sbjct: 123 NQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

BLAST of Csor.00g006290 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.63e-15
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60
           MAAIK+L+SI+L+ALL F ESL TSAA  RGAS S+  +LRRNI+QT       +E K N
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  VHIKRRM--RMRPVLIGR---PKTSAANRSREAFCGVGSMLCIF 99
           V IK+    R RP+  G     ++SAANRSR    G+G +L  F
Sbjct: 61  VRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFF 104

BLAST of Csor.00g006290 vs. ExPASy TrEMBL
Match: A0A6J1GRX2 (uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC111456466 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.63e-14
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEK--- 60
           MA IK+L+SIAL+ALLL  E LP SAA H  A + LA + RR+ +QT A+ HQVAE    
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQT-AERHQVAENGIG 149

Query: 61  ---KFNVHIKRRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
               F   I+RR R        P  S+AN S+ +  GVGS+LC+  + GLFL
Sbjct: 150 YQYSFEQKIRRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLFL 200

BLAST of Csor.00g006290 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.08e-13
Identity = 59/119 (49.58%), Postives = 71/119 (59.66%), Query Frame = 0

Query: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----- 60
           MAAI+ L+SIAL+ALL F ESL TS   H     SL GI  RNI+ T A  H++      
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTS---H-----SLTGIPHRNILHTVA--HRIVNGSVE 60

Query: 61  ---EKKFN-VHIKRRMRMRPVLI----GRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106
              ++K N +H K R R+RP+LI    G    SA NRSR A   VGSMLCI + LGLFL
Sbjct: 61  SSYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593163.13.70e-63100.00hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7025561.12.43e-4598.86E3 ubiquitin-protein ligase MIEL1, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575859.12.43e-2257.89hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0068047.12.14e-1653.92protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
XP_022992473.15.08e-1649.11uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A5A7VLE51.04e-1653.92Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1JZB12.46e-1649.11uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0KAQ71.63e-1550.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1[more]
A0A6J1GRX23.63e-1447.32uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC1114564... [more]
A0A5D3D3Y63.08e-1349.58E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g006290.m01Csor.00g006290.m01mRNA