Csor.00g005180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g005180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Photosystem II stability/assembly factor
Location	Csor_Chr08: 2959575 .. 2964105 (+)
RNA-Seq Expression	Csor.00g005180
Synteny	Csor.00g005180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCCATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTAGTTCCGATAGCTTTGGTTCCTTTTTCTGCAGAAATCAACGAATAATGCTGGAGAATTTTGAGTTTGTTTTTGTTTTTCTACTACGAATTATTGTGTTTCGGAAACTCACTAGTCACAGCAATTAATTGTTGGAAACATCTGCAGTTTGGGAGGATTTGTACACTGAAAAGCTATTAGGCGGTACATTTGTTTGTTCAATTGTCTTATTTGGAGGCTTGAATTATGTTCTACATAAGTTAAGCTGGTCTTCATTTCCAATTATTTTAAAATCAGTTTCTTCATCAATAATTCTTTTGGGGGGTGGGGAGTTTGAGTGCTTACGGATTCTGTCAAGGCTTCTGAATGTTGTAATTTGTAATTTCTCGTTCGTCAGTTATGGTTTCAAGTTCCTTCCGCCAACATAATGCCACGAGAAACCATTTGACACTTTCAGCCCACTGCAGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTAAACTACTAAATTATATAATCGATAAGGAATTCATTATACGGCAGTGCTTGAACTTTAGGTTCTATTTTCAGATGTTGCTATTTTATAGATTTTGCTTTATCCATTGTAGTTATAAGGCTCATTTACTATAGTTAAACATGGTGAGACCGTAAATAAGGGATTATTCAAAGCTCTAAATTAAGATGGAAATTTTGGTTCTTTTAACATATCTAGAGCTATAAATTGATCTGTTGTTTTCTGCCAGAAAGTGCTTTTATTTAACACTAGAGTGGTTGATTCTATTATAAAACTTCAGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGGTGAGCTTCAGCAGGGGAAAATTTCCATTCTATTAGGTTTAAGATTAAAGATTCGTTGTTTGGAATTTAACCTTGAAATCATTCCGGAATAGTTGATAGGCTGATAACTGATGAGATTTGACTGGCAGCTTGTGGCAGGAAATCATGGGCCAGACTCCAATGTTCACTAGTTTAGCTCATTGAAAGAAAAAATTTAATCCCGATTAAGTGATGCTAATGTGGTTTTCTTGACCTTTTTCAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGGTTTAACTTTTATATTTCTCTCTCTATCTCTCTTCTTCTAACCGTGTTACTCTGAACTGGCTTACTCTGAACTTTTATATTTCATTAAATCTTGGCTTTATTTGCAAGATCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCTAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAGTAAGTGAAATCGATGACCGTTCCTTTGTGTTTCTACTTTCTAGTGAAGCCACCCTAATTGAAAATATGAAAAATGGTTTAGAGGTGCAATGTGGTTTCATTTTAACCCTTACCAAAAGCCATATCCCTCCTTTTACTAGTTACTCGAGCATTGAATATTGTTCAATAAGTTTTCATCTTAGACTTGGGGATGCATAGTAATCCGATGACGGAATCCTATAATCGCATTGCTTTTCAGATATATTATCATTAGAAACTTTTGTGGTTTTTTTTCTTAAACAAAATCATGAAAACGTCGTAAGTGAAAACTAATTTTTCATCTTATTCATCATTAACTTGAAACCAGAGGGCAAGTAAATTCTAAATTGTCATTCTATAGGTTATATCTATGCTGTTGCTTCCCAAAATTTCAGCTAGACCTCTCAGCCGACTCCCGACTCCTGTTAAATATTAACTGCTTGTTGAATTCATGATGTTTCTCATAACAGATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGTAAGTTCTTGAAGACTCCTGCTGATTTGTGATTGAGATAGAAATATCATATCTTTTAGTTATAAATAGATGAAATTGACCTTCTTGGAGGGGGTACTCAATGGATCTGGTTGATTTGTGTAGCAGATCAAATAAGGGAAGGGCCAGACAGAAGCCTAAAATATGATTATTTAGTTTTTCATTGACATGCTATATGTTGAACTGAAATATACAGTACTAAAAGTGCACTGTGCAGCACAAATTATTCATTTCAGCAAGTACGAATGAGAGAAAAACTAAAAGATTCATTTTTTAGAGAATCAGTTTGTGCATGAAATATAGCTGGAAAAGCCTCTGTTTTTGTGACGATGAGAAAAAAATGAATTGTTTTTCAGGCATTTTAATTAGCCTGGTGCATATTTATGAAATAAGGTATGGGTATGTTCCACATCTTCTCTGGAGTAGTTAGATTTCTCATTTAATCACATACCTTCCTGCAATTCTTAACGTGAGGAATGACGGTACTAACATAGAACTTGTACGATCTCGTGTTCATAATAAATAATTGCATTCTCCAAGATACCTTGAGCTTGTAGTCGGAAGTCATGTATATTTCGTGCGAAGTGTAGTGCATATCTCATCATCCCTTGGCAATGAATATATAATCTGTATGCTGAATTCGAAGACACATATCCTTTTACGACCTTACTTGAACAAGATCAGTTCTATAGGTTGTACATCTGTGTCGTTGAGTTCTAATGATTCGTCATTTTGGATTTATCATAACCACCAGACAAAAACGAAGTCATCCCTTTACACAAAATCGATCGCCTTGGTGGATATGTTTGACAGTTTTTCTTGTTTTTGGTATGAGTTGTACAGGAAGAAGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTGAGTATCACCATACTGTGAAATAAAGTCTGTTCCTTTATAAATTCTCTTTTTATGGCTCTCCCTTAGGTGAGTAATGTGTAAGAAGAAGAATCAGAGCTCTATTCCTTGCTTCTTCTTTTGGGGTGGGTTTGGGATGAATTTTGGAAGGTAAAAAATGTTTTTAACCTATTTGGAAAGCTTTTGTGGTGTTCAGTTTGATAATTGAAAATAATTCAAAAAAATTTAAAAACACTTGAAGAATATTTCTTTCAAAAGTATATATAAAAAGGGGTGCCTTCAATTTTCTTTCATTTTGAAAAGTCACAATCAATATGGCTGCAAACACAATGCAATTGTGCTATACTTCACCTTCACATATTCTCATATAATCAATCTATTTACATCTCCGCAGGTTTATAAACGATAAGAAAGGTTTTGTACTCGGAAATGACGGGGTGTTGCTTCAATATCTTGGTTGAACTTTGAGATTTTACTCGGTAATCAATGCCTCTTCCTTCTCTTCTTTGATTTTTCTTTTGCCATCTCAGGCTCTTGCTGTGTGTAAATGTAATTTTTTTAACCCTACATTCCAAACTGTTCTAAAATTATATTCAGAATATAAAAGCAGTAAAAGGGTAACCTTCAAGAACATGTATTATTTTGTTCCTTGAAATTTGTTAAACTCGAAAAATATTCCAGAAAGGCTATTTATAAACTTTATTTTGTGTAGAGGCTGGTATTCGGGATTGCTTGAAAATCAAAATTTCCGTTTACTGCTTGATTATGTTGTAGGGTTACTGAATTGTTGCAACATTGTTCTAATTCTAATTGCTGCATCAAAGATTCAGGTTTTGGCATGTTTCTTTTTCAGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACACAGCTTTGCGTTCTTGCTTTCGATGA

mRNA sequence

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCCATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCTAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAAGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTTTATAAACGATAAGAAAGATTTTACTCGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACACAGCTTTGCGTTCTTGCTTTCGATGA

Coding sequence (CDS)

ATGGCGACTCTGCAACAACTCCTTAGACCTTCATGGTTCGCTTCCTCTTCTCCTCGCCATTCCTTCACCTCCCTCTCTCAACCTCAACTTCAGCCACGAACTGTTAATTCTGTCACCCCCAAAGCCTCAATTAAGAATTCTTCCATTAATCGCCGGGAGTTCGTCGCTGAAACGGCAGCCGCGGTTTCTCTCTCGCTCTCTCCGTTGATTGCTCCCGTAAAACCGGCGAAGTCTGAAGAAAATCTGTCGCAGTGGGAGAGACTTTACCTTCCCATAGATCCTGGTGTTGTCCTTCTCGACATTGCTTTTGTGCCCGACGATTTGAACCATGGTTTCCTTTTGGGGACACGGCAAACCATTTTAGAGACAAAAGATGGTGGAAGAACATGGGCTCCACGTTCAATCCCCTCAGCTGAAGAAGAAGACTTCAACTACCGATTTAATTCTATTAGCTTCCAAGGAAAGGAGGGATGGATCGTTGGAAAGCCTGCAATTCTGTTGTACACTTCGGATGCTGGAGAAAGCTGGGAAAGGATACCACTTAGTGCTCAGCTTCCTGGTGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCAATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTCAGGAGACTGTTTCTGCCACTCTTAATAGAACAGTTTCTAGTGGTATAAGTGGTGCAAGCTATTACACTGGAACCTTTAACACAGTAAATCGCTCTCCTGATGGGCGTTATGTAGCTGTTTCAAGTCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATTCTGGCAGCCACATAATAGAGCTATTGCTAGGAGGATTCAAAACATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGAATAAGTGAGGATTTTGAAGAAGTTCCAGTTCAAAGCCGAGGATTTGGCATATTAGATGTTGGTTATCGTTCAAAGGAAGAAGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAAGACATGGACCCGTGATAAAGCAGCTGACAATATTGCGGCCAACCTATACTCTGTAAAGTTTATAAACGATAAGAAAGATTTTACTCGGTTACAGAATCAGATTTTATATGATGCTTGCGATGGAAATTTTGTATCATTAAATAACACAGCTTTGCGTTCTTGCTTTCGATGA

Protein sequence

MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQILYDACDGNFVSLNNTALRSCFR

Homology

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BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot
Match: O82660 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF136 PE=1 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 2.2e-171
Identity = 294/379 (77.57%), Postives = 338/379 (89.18%), Query Frame = 0


Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + + +AAVSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQ-SAAVSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
              PA+++E LS+WER++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  ---PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKDF 391
           DNIAANLY+VKF++DKK F
Sbjct: 376 DNIAANLYAVKFVDDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot
Match: Q5Z5A8 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HCF136 PE=3 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.1e-169
Identity = 296/384 (77.08%), Postives = 325/384 (84.64%), Query Frame = 0


Query: 33  RTVNSVTPKASIKNSSINRREFVAETA-AAVSLSLSPLIAPVKP---AKSEENLSQWERL 92
           R    + P+A   + S  RR F+A+TA A+ + ++ PL+ P  P   A    +LS+WER+
Sbjct: 20  RRCRLLVPRAHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERV 79

Query: 93  YLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFN 152
            LPIDPGVVLLDIAFVPDD +HGFLLGTRQTILETK+GG TW PRSIPSAE+EDFNYRFN
Sbjct: 80  LLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFN 139

Query: 153 SISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA 212
           S+SF GKEGWI+GKPAILL+TSDAG+SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEGA
Sbjct: 140 SVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAEMVTDEGA 199

Query: 213 IYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 272
           IYVTSN+GYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN
Sbjct: 200 IYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGN 259

Query: 273 FYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTG---------- 332
           FYLTWEPGQPFWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKG+G          
Sbjct: 260 FYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLND 319

Query: 333 ------------ISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWT 391
                       I+EDFEE  VQSRGFGILDVGYRSK+EAWAAGGSGVLLKTTNGGKTW 
Sbjct: 320 AHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWV 379

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BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot
Match: Q9AW48 (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta OX=55529 GN=hcf136 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.7e-91
Identity = 163/359 (45.40%), Postives = 237/359 (66.02%), Query Frame = 0


Query: 49  INRREFVAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDL 108
           INR +F       ++  L P +  + P  +  N + W ++ LP+D   VL DI F   + 
Sbjct: 42  INRTKF-------INYLLYPTLTSLYPKFTHANTTSWTKVDLPVDS--VLFDIEFTDPEC 101

Query: 109 NHGFLLGTRQTILETKDGGRTWAPRSIPSAE-EEDFNYRFNSISFQGKEGWIVGKPAILL 168
            HG+L+G++ T LET DGG TW PR+  + + +E+  YRF +ISF+G+EGW++GKPAI+L
Sbjct: 102 KHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISFEGQEGWVIGKPAIIL 161

Query: 169 YTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETV 228
           YT D G++W R+P+S +LPG+   IKA G +SAE+ T  GAIYVT+N G NWKA V+ET+
Sbjct: 162 YTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAELTTTSGAIYVTNNAGRNWKAQVKETI 221

Query: 229 SATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAI 288
            +TLNRT+SSG+SGASY+TG    V R+ +G+Y+A+SSRGNFYLTWEPGQ FW P  R  
Sbjct: 222 DSTLNRTISSGVSGASYFTGNVINVIRNSEGKYLAISSRGNFYLTWEPGQDFWIPRARET 281

Query: 289 ARRIQNMGWRADG---GLWLLVRGGGLFLSKGT----GISE-DFEEVPVQSRGFGILDVG 348
           +RRIQ+MG+  +    G+W+  RGGGL +S        IS  +FE + +++ G+GILD  
Sbjct: 282 SRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAA 341

Query: 349 YRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQIL 399
           + + ++ W   G G++  +T+ GK WT+    D ++ NLY +KF+N+ K F    N +L
Sbjct: 342 FVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLL 391

[Close]

BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot
Match: P73069 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr2034 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.8e-75
Identity = 149/315 (47.30%), Postives = 195/315 (61.90%), Query Frame = 0


Query: 85  WERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFN 144
           W+ + L  D      DIAF  +D NHG+L+GT++TI ET DGG TW  + I   EE+   
Sbjct: 40  WQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEK--- 99

Query: 145 YRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVT 204
             F+++SF G EGWI GKP+ILL+T+D G++W RIPLS +LPG    I A G ++AEM+T
Sbjct: 100 ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 159

Query: 205 DEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVS 264
           D GAIY T+N G NWKA V+  V                   G   T+ RS DGRYVAVS
Sbjct: 160 DLGAIYKTTNGGKNWKALVEGAV-------------------GVARTIQRSTDGRYVAVS 219

Query: 265 SRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFE 324
           +RGNFY TW PGQ  W PHNR  +RR+Q MG+  DG LWLL RGG L  S      E  +
Sbjct: 220 ARGNFYSTWAPGQTEWTPHNRNSSRRLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSD 279

Query: 325 EVPVQSRG-FGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAADNIAANLYSVKF 384
            +  Q +G +G+LD+ +R+ EE W AG SG LL + +GG+TW +D   ++I ANLY V F
Sbjct: 280 VIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVF 329

Query: 385 INDKKDFTRLQNQIL 399
           ++ +K F   Q+ IL
Sbjct: 340 LSPEKGFVLGQDGIL 329

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BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot
Match: Q8DI95 (Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=tll1695 PE=1 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.8e-75
Identity = 147/339 (43.36%), Postives = 204/339 (60.18%), Query Frame = 0


Query: 62  VSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTIL 121
           VSLS   L  P        + + WE + LP      +LD++F+  D +HG+L+G   T++
Sbjct: 30  VSLSTPALAIPAL------DYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLM 89

Query: 122 ETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPL 181
           ET+DGG+TW PR++     +  +YRFNS+SFQG EGWIVG+P I+L+T+D G+SW +IPL
Sbjct: 90  ETRDGGQTWEPRTLVL---DHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPL 149

Query: 182 SAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISG 241
             +LPG    IKA G  SAEM+T+ GAIY T + G NW+A VQE +              
Sbjct: 150 DPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAI-------------- 209

Query: 242 ASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGG 301
                G    +NRSP G YVAVSSRG+FY TWEPGQ  W+PHNR  +RR+ NMG+  DG 
Sbjct: 210 -----GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR 269

Query: 302 LWLLVRGGGLFLSKGTGISEDFEEV--PVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTT 361
           LW++V GG +  S     SE++ E+  P++    G LD+ YR+  E W AGG+G LL + 
Sbjct: 270 LWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQ 329

Query: 362 NGGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQIL 399
           +GG+TW +D     + +N Y + F +  + F   Q  IL
Sbjct: 330 DGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGIL 335

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BLAST of Csor.00g005180 vs. NCBI nr
Match: KAG6593273.1 (Photosystem II stability/assembly factor, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 841 bits (2173), Expect = 8.81e-308
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQILYDACDGNFVSLNNTALRSCFR 419
           GGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQILYDACDGNFVSLNNTALRSCFR
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDFTRLQNQILYDACDGNFVSLNNTALRSCFR 419

[Close]

BLAST of Csor.00g005180 vs. NCBI nr
Match: KAG7025624.1 (Photosystem II stability/assembly factor, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 779 bits (2012), Expect = 1.66e-283
Identity = 389/390 (99.74%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. NCBI nr
Match: XP_022959584.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 777 bits (2007), Expect = 9.62e-283
Identity = 387/390 (99.23%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MAT+QQLLRPSWFASSSPRHSFTSLSQPQ+QPRTVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATMQQLLRPSWFASSSPRHSFTSLSQPQVQPRTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. NCBI nr
Match: XP_023004561.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 775 bits (2002), Expect = 5.56e-282
Identity = 386/390 (98.97%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MATLQQLLRPSWFASSSPRHSFTSLSQPQ+QP+TVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESW+RIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. NCBI nr
Match: XP_023514720.1 (photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 772 bits (1993), Expect = 1.31e-280
Identity = 387/390 (99.23%), Postives = 387/390 (99.23%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MATLQQLLRPS FASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATLQQLLRPSCFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQW RLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWARLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL
Match: A0A6J1H8H0 (Photosystem II stability/assembly factor OS=Cucurbita moschata OX=3662 GN=LOC111460613 PE=3 SV=1)

HSP 1 Score: 777 bits (2007), Expect = 4.66e-283
Identity = 387/390 (99.23%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MAT+QQLLRPSWFASSSPRHSFTSLSQPQ+QPRTVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATMQQLLRPSWFASSSPRHSFTSLSQPQVQPRTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL
Match: A0A6J1KSF8 (Photosystem II stability/assembly factor OS=Cucurbita maxima OX=3661 GN=LOC111497826 PE=3 SV=1)

HSP 1 Score: 775 bits (2002), Expect = 2.69e-282
Identity = 386/390 (98.97%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFVAETAA 60
           MATLQQLLRPSWFASSSPRHSFTSLSQPQ+QP+TVNSVTPKASIKNSSINRREFVAETAA
Sbjct: 1   MATLQQLLRPSWFASSSPRHSFTSLSQPQVQPQTVNSVTPKASIKNSSINRREFVAETAA 60

Query: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120
           AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI
Sbjct: 61  AVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTI 120

Query: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIP 180
           LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESW+RIP
Sbjct: 121 LETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWDRIP 180

Query: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240
           LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS
Sbjct: 181 LSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGIS 240

Query: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300
           GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG
Sbjct: 241 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADG 300

Query: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360
           GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN
Sbjct: 301 GLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTN 360

Query: 361 GGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           GGKTWTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 GGKTWTRDKAADNIAANLYSVKFINDKKGF 390

[Close]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL
Match: A0A5D3CGP8 (Photosystem II stability/assembly factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00160 PE=3 SV=1)

HSP 1 Score: 729 bits (1881), Expect = 7.94e-264
Identity = 367/395 (92.91%), Postives = 381/395 (96.46%), Query Frame = 0


Query: 1   MATLQQ-LLRPSW----FASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFV 60
           MATLQQ LL+PSW    FASSSPRHS   LSQPQL PRT++S +PKAS+ NSSINRR+FV
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHS---LSQPQLLPRTISSTSPKASLHNSSINRRQFV 60

Query: 61  AETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120
           A+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDDLNHGFLLG
Sbjct: 61  ADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGES 180
           TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGES
Sbjct: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGES 180

Query: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           LKTTNGG++WTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 LKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGF 392

[Close]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL
Match: A0A1S3CFV0 (Photosystem II stability/assembly factor OS=Cucumis melo OX=3656 GN=LOC103499970 PE=3 SV=1)

HSP 1 Score: 727 bits (1877), Expect = 3.23e-263
Identity = 366/395 (92.66%), Postives = 381/395 (96.46%), Query Frame = 0


Query: 1   MATLQQ-LLRPSW----FASSSPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREFV 60
           MATLQQ LL+PSW    FASSSPRHS   LSQPQL PRT++S +PKAS+ NSSINRR+FV
Sbjct: 1   MATLQQQLLKPSWTSSLFASSSPRHS---LSQPQLLPRTISSTSPKASLHNSSINRRQFV 60

Query: 61  AETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120
           A+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDDLNHGFLLG
Sbjct: 61  ADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDLNHGFLLG 120

Query: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGES 180
           TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGES
Sbjct: 121 TRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGES 180

Query: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240
           WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV
Sbjct: 181 WERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTV 240

Query: 241 SSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300
           SSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG
Sbjct: 241 SSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMG 300

Query: 301 WRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360
           WRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL
Sbjct: 301 WRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVL 360

Query: 361 LKTTNGGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           LKTTNGG++WTRDKAADNIAANLYSVKFIN+KK F
Sbjct: 361 LKTTNGGRSWTRDKAADNIAANLYSVKFINEKKGF 392

[Close]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL
Match: A0A0A0K5Y1 (Photosystem II stability/assembly factor OS=Cucumis sativus OX=3659 GN=Csa_7G420730 PE=3 SV=1)

HSP 1 Score: 726 bits (1873), Expect = 1.36e-262
Identity = 368/396 (92.93%), Postives = 381/396 (96.21%), Query Frame = 0


Query: 1   MATLQQ-LLRPSW----FASS-SPRHSFTSLSQPQLQPRTVNSVTPKASIKNSSINRREF 60
           MATLQQ LL+PSW    FASS SPRHS   LSQPQL PRT++S TPKAS+ NSSINRR F
Sbjct: 1   MATLQQQLLKPSWTSSLFASSTSPRHS---LSQPQLLPRTLSSTTPKASLHNSSINRRHF 60

Query: 61  VAETAAAVSLSLSPLIAPVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLL 120
           VA+TAAAVSLSLSP IAPV+PAKSEE+LS+WERLYLPIDPGVVLLDIAFVPDD+NHGFLL
Sbjct: 61  VADTAAAVSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLL 120

Query: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGE 180
           GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISF+GKEGWIVGKPAILLYTSDAGE
Sbjct: 121 GTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGE 180

Query: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240
           SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT
Sbjct: 181 SWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRT 240

Query: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300
           VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM
Sbjct: 241 VSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNM 300

Query: 301 GWRADGGLWLLVRGGGLFLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360
           GWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV
Sbjct: 301 GWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGV 360

Query: 361 LLKTTNGGKTWTRDKAADNIAANLYSVKFINDKKDF 390
           LLKTTNGG++WTRDKAADNIAANLYSVKFINDKK F
Sbjct: 361 LLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGF 393

[Close]

BLAST of Csor.00g005180 vs. TAIR 10
Match: AT5G23120.1 (photosystem II stability/assembly factor, chloroplast (HCF136) )

HSP 1 Score: 603.2 bits (1554), Expect = 1.6e-172
Identity = 294/379 (77.57%), Postives = 338/379 (89.18%), Query Frame = 0


Query: 15  SSSPRHSFTSLSQ---PQLQPRTVNSVTPKASIKNSSINRREFVAETAAAVSLSLSPLIA 74
           S SPR     +S    P+       S +P +S  + S +RRE + + +AAVSLSLS ++ 
Sbjct: 16  SVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLYQ-SAAVSLSLSSIVG 75

Query: 75  PVKPAKSEENLSQWERLYLPIDPGVVLLDIAFVPDDLNHGFLLGTRQTILETKDGGRTWA 134
              PA+++E LS+WER++LPIDPGVVLLDIAFVPD+ + GFLLGTRQT+LETKDGG TW 
Sbjct: 76  ---PARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWN 135

Query: 135 PRSIPSAEEEDFNYRFNSISFQGKEGWIVGKPAILLYTSDAGESWERIPLSAQLPGDMVY 194
           PRSIPSAEEEDFNYRFNSISF+GKEGWI+GKPAILLYT+DAGE+W+RIPLS+QLPGDMV+
Sbjct: 136 PRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVF 195

Query: 195 IKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT 254
           IKAT +KSAEMVTDEGAIYVTSN+GYNWKAA+QETVSATLNRTVSSGISGASYYTGTF+ 
Sbjct: 196 IKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSA 255

Query: 255 VNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGL 314
           VNRSPDGRYVAVSSRGNF+LTWEPGQP+WQPHNRA+ARRIQNMGWRADGGLWLLVRGGGL
Sbjct: 256 VNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 315

Query: 315 FLSKGTGISEDFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGKTWTRDKAA 374
           +LSKGTGI+E+FEEVPVQSRGFGILDVGYRS+EEAWAAGGSG+LL+T NGGK+W RDKAA
Sbjct: 316 YLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAA 375

Query: 375 DNIAANLYSVKFINDKKDF 391
           DNIAANLY+VKF++DKK F
Sbjct: 376 DNIAANLYAVKFVDDKKGF 390

The following BLAST results are available for this feature:

BLAST of Csor.00g005180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82660	2.2e-171	77.57	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis th...	[more]
Q5Z5A8	2.1e-169	77.08	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa s...	[more]
Q9AW48	1.7e-91	45.40	Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia the...	[more]
P73069	1.8e-75	47.30	Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
Q8DI95	1.8e-75	43.36	Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=t...	[more]

BLAST of Csor.00g005180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593273.1	8.81e-308	100.00	Photosystem II stability/assembly factor, chloroplastic, partial [Cucurbita argy...	[more]
KAG7025624.1	1.66e-283	99.74	Photosystem II stability/assembly factor, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_022959584.1	9.62e-283	99.23	photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita m...	[more]
XP_023004561.1	5.56e-282	98.97	photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita m...	[more]
XP_023514720.1	1.31e-280	99.23	photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita p...	[more]

BLAST of Csor.00g005180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8H0	4.66e-283	99.23	Photosystem II stability/assembly factor OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KSF8	2.69e-282	98.97	Photosystem II stability/assembly factor OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5D3CGP8	7.94e-264	92.91	Photosystem II stability/assembly factor OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CFV0	3.23e-263	92.66	Photosystem II stability/assembly factor OS=Cucumis melo OX=3656 GN=LOC103499970...	[more]
A0A0A0K5Y1	1.36e-262	92.93	Photosystem II stability/assembly factor OS=Cucumis sativus OX=3659 GN=Csa_7G420...	[more]

BLAST of Csor.00g005180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23120.1	1.6e-172	77.57	photosystem II stability/assembly factor, chloroplast (HCF136)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 146..367 e-value: 3.3E-9 score: 37.9
IPR028203	Photosynthesis system II assembly factor Ycf48/Hcf136-like domain	PFAM	PF14870	PSII_BNR	coord: 80..391 e-value: 2.2E-117 score: 391.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..37
None	No IPR available	PANTHER	PTHR47199	PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC	coord: 43..390
None	No IPR available	SUPERFAMILY	110296	Oligoxyloglucan reducing end-specific cellobiohydrolase	coord: 90..390

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g005180.m01	Csor.00g005180.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding