Csor.00g004820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Location	Csor_Chr08: 3186742 .. 3187582 (-)
RNA-Seq Expression	Csor.00g004820
Synteny	Csor.00g004820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGTATTTCAATTTCGCTGTTGAAATCTCTAAATTAAAGAGGTTTAACGGAAAATTTCGTTTCGAAAATCGATTTTATGATCTTAATTTTGCAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

mRNA sequence

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

Coding sequence (CDS)

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

Protein sequence

MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTPPSLADAGGAFNVYYGTAASWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY

Homology

[Close]

BLAST of Csor.00g004820 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 121/216 (56.02%), Postives = 148/216 (68.52%), Query Frame = 0


Query: 35  PLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTP--PSLADAGGAFNVYYGTAAS----- 94
           P++P   ++  G     T+  +A+A  ++L+  P  P+  +    + +YYGTAAS     
Sbjct: 18  PIVPKAIASRLG-----TSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAASAANYG 77

Query: 95  ---------------------WKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIR 154
                                WKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG R
Sbjct: 78  GYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFR 137

Query: 155 QLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTC 214
           QLAP+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC
Sbjct: 138 QLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTC 197

Query: 215 AKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGS 223
           +KN+LYAHFVNAP PEW+RD D L H+ +SFKTV S
Sbjct: 198 SKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Csor.00g004820 vs. NCBI nr
Match: KAG6593309.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434 bits (1116), Expect = 2.88e-153
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLT 120
           AAILSTTPPSLADAGGAFNVYYGTAASWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLT
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLT 120

Query: 121 FLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHS 180
           FLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHS
Sbjct: 121 FLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHS 180

Query: 181 LISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY 223
           LISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY
Sbjct: 181 LISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY 223

[Close]

BLAST of Csor.00g004820 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420 bits (1079), Expect = 3.21e-147
Identity = 223/249 (89.56%), Postives = 223/249 (89.56%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. NCBI nr
Match: XP_022959905.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 416 bits (1069), Expect = 1.07e-145
Identity = 221/249 (88.76%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. NCBI nr
Match: XP_023513479.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413 bits (1062), Expect = 1.25e-144
Identity = 220/249 (88.35%), Postives = 221/249 (88.76%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. NCBI nr
Match: XP_023004635.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 405 bits (1040), Expect = 2.82e-141
Identity = 216/249 (86.75%), Postives = 217/249 (87.15%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 416 bits (1069), Expect = 5.20e-146
Identity = 221/249 (88.76%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL
Match: A0A6J1KV54 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497869 PE=4 SV=1)

HSP 1 Score: 405 bits (1040), Expect = 1.36e-141
Identity = 216/249 (86.75%), Postives = 217/249 (87.15%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAAS                          WKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

[Close]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 2.00e-118
Identity = 191/253 (75.49%), Postives = 200/253 (79.05%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    PLS  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQSK--SPLSISTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKE 120
           AIAVAAIL+T PPSLAD G AFNVYYGTAAS                          WKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 223
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

[Close]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 2.00e-118
Identity = 191/253 (75.49%), Postives = 200/253 (79.05%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    PLS  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQSK--SPLSISTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKE 120
           AIAVAAIL+T PPSLAD G AFNVYYGTAAS                          WKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 223
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

[Close]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 345 bits (885), Expect = 9.64e-118
Identity = 192/249 (77.11%), Postives = 200/249 (80.32%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSA AAA+TG   PK  Q P +    IP+LQS PS  LSSLTA  SAIA+
Sbjct: 24  MATAISPLAFFSA-AAASTGTTAPKLPQKPQI----IPILQSKPS--LSSLTAACSAIAI 83

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAAS--------------------------WKERLVS 120
           AAI+ST+PPSLADAG AFNVYYGTAAS                          WKERLVS
Sbjct: 84  AAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVS 143

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE 
Sbjct: 144 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAES 203

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 223
           FSAEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVH
Sbjct: 204 FSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH 263

[Close]

BLAST of Csor.00g004820 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 225.7 bits (574), Expect = 3.7e-59
Identity = 106/135 (78.52%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 88  WKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQD 147
           WKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAP+DVILNNLALSDV LQD
Sbjct: 8   WKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQD 67

Query: 148 QIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQ 207
            IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PEW+RD 
Sbjct: 68  LIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPEWNRDH 127

Query: 208 DMLRHVHESFKTVGS 223
           D L H+ +SFKTV S
Sbjct: 128 DTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Csor.00g004820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	1.6e-59	56.02	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Csor.00g004820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593309.1	2.88e-153	100.00	Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma...	[more]
KAG7025659.1	3.21e-147	89.56	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]
XP_022959905.1	1.07e-145	88.76	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513479.1	1.25e-144	88.35	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_023004635.1	2.82e-141	86.75	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Csor.00g004820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7M1	5.20e-146	88.76	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KV54	1.36e-141	86.75	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CG07	2.00e-118	75.49	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	2.00e-118	75.49	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JN94	9.64e-118	77.11	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Csor.00g004820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	3.7e-59	78.52	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 70..219 e-value: 7.2E-14 score: 54.0
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 87..220
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..87
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 87..220 coord: 2..87
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 125..218 e-value: 2.5E-8 score: 34.2
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 86..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004820.m01	Csor.00g004820.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding