Csor.00g004380 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004380
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	MAGUK p55 subfamily member 4 like
Location	Csor_Chr08: 3387461 .. 3389692 (+)
RNA-Seq Expression	Csor.00g004380
Synteny	Csor.00g004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGTTAGTTTGTTAATGCTCTTCTTCTTTCGCTTTCGATTTTAATTTTTCTCGAATCGGAGTTTGATTATGGCTTAATTTGATCGAATGTGATGATCTCGACTGCTTGATTTGCTTCCGATTGATGGAATTGCTGAATTTCTGTTGCTCTATGGTTTCTGATTTTTCTTCTTCCATTTATTGTTTCGATACTGCCATTTGGAGTTGAAAACTGCATAAAAATTTGTTTGAATCATCATTTACAATCAAAATTCCTGCATAAGAATTTGTTTGAATCATCATTTACAATCAAAATTCCTGCATAAGAATTTGTTTGAATCATCATTTACAATCAAAATTCCTGCATAAGAATTTGTTTGAATCATCATTTACAATCCAAATTCCTGCATAATATTATGGTATGCGATTAAAAGGGGAAAAAATCTCGTTCTCGATTAATGGTAAAATAAATTTGAAAAAGACGAAAAGAGGCACCAAGTGAACCGAAAGGTAAAATACGGTTCATAGTACTAATTTCTTAATGTTCTCCTCTTTCTTTATTAGCTTTATCGCTTTAAATAGGTTATATGTTATACCTTGATCTGTATGCAATGGTTATTAGCCACTTAATCTCCACCACTATGATAGCGAGAGAGAGATAAAGAGAGTTGATGTTATAAGGCAATTGTAAATGGCCATGTGATTATTCAACCCATCCAGTACAATAATTTGGTAGGAAAAATCACAAGGAACGTTCCATAGACATTGGCCCATCTATTCTTACTTTTTGAAAGTGACTACATGTATCTATATGTAATAACTTAAAGCGCACGGTTAATAGATATTGTCCGTTTTATTTCGTTACGGGTCACTATCAGCTTTATAGTTTTAAAACGTGGTTGGCTGATTATGATACATTTCGGGCTAAAATGGATAATATTTGCTAGCGATGGGCTTGAATTGTTACAAATGGTATCAGAGTCAGGCGCCGAGTAGTGTGCTAGTGAGGATGTTGGCCCCAAGGGAGGTGGATTGTGAGACCTCACATTGATTGGAGAGGAGAACAAAATATTTCTTATAAATGATATGGAAACCTCTCCCTATCAGACGCATTTTGAAACCACTAACCAAAAGATAATATCTAGTAGCTGTGGACTTGGACTTACCTTATATGGCCAAAAATATCACCGAAAGTGATTTTGAATGTGAAATCCCTTTAATTTTAGGAATTTTAGTTTATGAGCGGAGATGTTTCTATCTTTAAACCACACCTTCATTTTAGGGAATTCAATTTCTAGACCGACATCTTGTTTTATACTCAAACTACTCGTTTTAATTTTCTTATTAACAATGTGATTCGAATATTTGATCTCTTGCCGAATGATGGCATGAACTTAATTTTATTTTTGAATGTGTATTATATTTATGGGGACACTTCCCCATTTCATAATGCACAAATAGGTCCCCACTTGCAGCAATGCAGTTGAAGACAGAGCGAAAGATTAAAGGCACCTTTATGCTTAAAGTTTTTTTTTTTTTCTTATAACAGTTTTGATTGTCTTGTTGTGATTCTTAACAGTCATCTGTCCCACTTGAGACTAACGACGGTCTCCAAATGCGCATTAGTTTTCAACTAGTGGCCTCCCATTTTGATTTGGTTTTGTCCTCTATTACTATTCTAACCATAACGCCAACAGGCCTGCCTGTCTACTCTTTTTAGTATTGTCCAAGTCGCACCACAAATTCCCTCTACCCTCTTCACACACACACACATATATAGAGAGAGAGAGATGAGGTGGGGTGGAGTTAGGTCAGTCCTGTCCCTTTAAAAGGAGTGGGCTCAAATTAGGCCCATTCAAGTCTGAATTGGTTGTTGGGTGGCCCCATCTCTCGAGGAATCTTTCATCCATAAGATTGCTCCGTAGAAATCTAAGCTAAGCTAAGCAATGATGTGAACTTTTGTGCTAACAGGAGGAGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTAGGTCAACCGAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGA

mRNA sequence

ATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGAGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTAGGTCAACCGAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGA

Coding sequence (CDS)

ATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGAGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTAGGTCAACCGAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGA

Protein sequence

MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNHAAAPSCYSATHAS

Homology

[Close]

BLAST of Csor.00g004380 vs. NCBI nr
Match: KAG6593352.1 (hypothetical protein SDJN03_12828, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025697.1 hypothetical protein SDJN02_12195 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (509), Expect = 6.52e-65
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLGQPKRKQRLFWRVSVWSNHAAAPSCYSATHAS 94
          LLGQPKRKQRLFWRVSVWSNHAAAPSCYSATHAS
Sbjct: 61 LLGQPKRKQRLFWRVSVWSNHAAAPSCYSATHAS 94

[Close]

BLAST of Csor.00g004380 vs. NCBI nr
Match: XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia])

HSP 1 Score: 172 bits (435), Expect = 1.24e-53
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVSARVRARKNG GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+G QPKRKQR FWRVSVWSNHAAA S ++ATHA
Sbjct: 61 LVGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of Csor.00g004380 vs. NCBI nr
Match: XP_038900267.1 (uncharacterized protein LOC120087349 [Benincasa hispida])

HSP 1 Score: 171 bits (434), Expect = 1.76e-53
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVSARVRARK+G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKSGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+G QPKRKQR FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVGHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. NCBI nr
Match: KGN45194.1 (hypothetical protein Csa_015637 [Cucumis sativus])

HSP 1 Score: 169 bits (427), Expect = 2.06e-52
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVSARVRARK G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+  QPKRKQR FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. NCBI nr
Match: XP_016902643.1 (PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo])

HSP 1 Score: 167 bits (424), Expect = 5.90e-52
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVS+RVRARK G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+  QPKRKQR FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 6.00e-54
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVSARVRARKNG GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+G QPKRKQR FWRVSVWSNHAAA S ++ATHA
Sbjct: 61 LVGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL
Match: A0A0A0K8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1)

HSP 1 Score: 169 bits (427), Expect = 9.97e-53
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVSARVRARK G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSARVRARKTGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+  QPKRKQR FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL
Match: A0A1S4E346 (uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 2.86e-52
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVS+RVRARK G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+  QPKRKQR FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL
Match: A0A6J1JS76 (uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 6.75e-51
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWL VSARVRARK+G GLLK LHDDVETCGYEDVKVMWE+LRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLK-LHDDVETCGYEDVKVMWEILRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAPSCYSATHA 93
          L+G +PKRK R FWRVSVWSNHAAA S Y+ATHA
Sbjct: 61 LVGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 4.28e-50
Identity = 82/97 (84.54%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESE 60
          MELWHKM+FPVRRVWLAVS+RVRARK G GLLK LHDDVETCGYEDVKVMWEMLRRSESE
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLK-LHDDVETCGYEDVKVMWEMLRRSESE 60

Query: 61 LLG-QPKRKQRLFWRVSVWSNHAAAP---SCYSATHA 93
          L+  QPKRKQR FWRVSVWSNHAAA    S Y+ATHA
Sbjct: 61 LVSHQPKRKQRPFWRVSVWSNHAAAAAAASSYTATHA 96

[Close]

BLAST of Csor.00g004380 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-09
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2  ELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESEL 61
          E W+ M FP RR+W   + RV  R +G   L +L  DV +C YED+ +MW +L ++E +L
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHSG---LLRLEHDVSSCEYEDIHIMWNLLHKNE-DL 67

Query: 62 LGQPKRKQRLFWRVSVWS 80
             P ++Q+   +   W+
Sbjct: 68 TRVPIQQQQQQRKKPCWN 81

The following BLAST results are available for this feature:

BLAST of Csor.00g004380 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g004380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593352.1	6.52e-65	100.00	hypothetical protein SDJN03_12828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022143553.1	1.24e-53	89.36	uncharacterized protein LOC111013423 [Momordica charantia]	[more]
XP_038900267.1	1.76e-53	89.36	uncharacterized protein LOC120087349 [Benincasa hispida]	[more]
KGN45194.1	2.06e-52	88.30	hypothetical protein Csa_015637 [Cucumis sativus]	[more]
XP_016902643.1	5.90e-52	87.23	PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo]	[more]

BLAST of Csor.00g004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR01	6.00e-54	89.36	uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0K8I7	9.97e-53	88.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1	[more]
A0A1S4E346	2.86e-52	87.23	uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=...	[more]
A0A6J1JS76	6.75e-51	85.11	uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437...	[more]
A0A5A7UWX2	4.28e-50	84.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Csor.00g004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	9.5e-09	35.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF19	OSJNBA0041A02.21-LIKE PROTEIN	coord: 2..87
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004380.m01	Csor.00g004380.m01	mRNA