Csor.00g004240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S12
Location	Csor_Chr08: 3460715 .. 3462092 (-)
RNA-Seq Expression	Csor.00g004240
Synteny	Csor.00g004240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCGTGAGTAGAAACTTGTTTGTAACAATTGCTATTTTCCCTAACTATTGCCATTTATTTTTGTGTTATATCTAGTCGCTTCGTTTGCAAAGTCTTGGATATAGAAAATGCTTTGATTCATAAGAAGTGAAACCTGCTGCTTGCAATCAACTAGTTGAGCGCTTGCTATAGGGCATGATTTAGAAAGACGTTTATTCATGGAGTCTCGATTGGTGAAGGCGATTAAACTGTAAATCTTGATGACTTGAGATGCTTTTTAATACGTCTTGGTCTTGGGTCGTACGAATTATGTAACTTTGAACTTCTGTATGTGATTTATACGTTGCTCTGTAGTATTAGTTCGTTGAGGTTAATGGTTCCTCATATGTCACTTGTCTAGTAGTGAACTATTATTGAAGCTTCTTCATTTGTTAACGAATATTTGCTGCAACGGTTTTATAATTGCCTTAAGTTGTTTTAGCAGTATGCCATAGAGGAATATTGAAACCTTTTCAACTTGTATTCTTTTGCAGTGATGAAGGTGCCGTTGTGGTTGAGGCTCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAGTCATTGGCTCATGGTGGGCTTGTTCGCGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGCGAAGACTGCAATCAGCCAGATTATATCAAACTAGTCAAAGCACTTTGTGCCGAGCACAACGTCAACTTGATGACAGTTCCTAGTGCAAAGACCCTTGGCGAGTGGGCTGGTGTAAGTGTTGCTTAATCTTGTTTAGACATATTTCTTAACTTTCCATCTAGATAAAATACTTTCCTTCTCCGTGTTTTCATTATTGCTTGCACCATTATGAACTATGCTATACTAATTCCACCATGATTGCAAGATCGAACCTATTACCTATCGATATATAGCTTCATGTTTACATGTTCTTGATTATATTAGGATTTACCCATAATATCTTTATGCTAAATTAAGAGAGATTTTTTTTACTCCTACCTTAAGTAACCTGCTAACACCATCTTGATAACTTTGGTTTTGCATTCTTTCCCATGTGAGTTCAGCACAAGTAATTTTCTTTTTCATATTTTGTCTAATGAAGCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTCGGTTGCTCTTGTGTGGTAGTTAAGGTACATCTGTGTGCTCATTCACTTCTCGAGCGAATATTCTGCTCGTTATCTTATAAAACACTATTGTTTACTTGGAATTTGAATGTGTTATTCCCAGGACTTTGGTGAGGATCACGAGGCACTTCACATTGTTCAGAAGCATGTGAGTTCAAATTGA

mRNA sequence

ATGTCAGCTGATGAAGGTGCCGTTGTGGTTGAGGCTCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAGTCATTGGCTCATGGTGGGCTTGTTCGCGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGCGAAGACTGCAATCAGCCAGATTATATCAAACTAGTCAAAGCACTTTGTGCCGAGCACAACGTCAACTTGATGACAGTTCCTAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTCGGTTGCTCTTGTGTGGTAGTTAAGGACTTTGGTGAGGATCACGAGGCACTTCACATTGTTCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGGTGCCGTTGTGGTTGAGGCTCCCGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAGTCATTGGCTCATGGTGGGCTTGTTCGCGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGCGAAGACTGCAATCAGCCAGATTATATCAAACTAGTCAAAGCACTTTGTGCCGAGCACAACGTCAACTTGATGACAGTTCCTAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTCGGTTGCTCTTGTGTGGTAGTTAAGGACTTTGGTGAGGATCACGAGGCACTTCACATTGTTCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

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BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-56
Identity = 103/130 (79.23%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 10  VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 69
           VEAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 70  YIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 129
           Y+KLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 130 LHIVQKHVSS 140
           L+IVQ++V S
Sbjct: 133 LNIVQQYVKS 142

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BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDY+KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-50
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDY+KLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

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BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYIKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P Y+KLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYIKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P Y+KLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of Csor.00g004240 vs. NCBI nr
Match: XP_023004118.1 (40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6593366.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025714.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282 bits (721), Expect = 8.97e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Csor.00g004240 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 281 bits (720), Expect = 1.27e-95
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. NCBI nr
Match: XP_022960502.1 (40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 280 bits (717), Expect = 3.65e-95
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPTPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Csor.00g004240 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 5.19e-95
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280 bits (715), Expect = 7.38e-95
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 4.34e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL
Match: A0A6J1H7K2 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111461217 PE=3 SV=1)

HSP 1 Score: 280 bits (717), Expect = 1.77e-95
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVVVEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPTPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 2.51e-95
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 2.51e-95
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL
Match: A0A1S3C6L3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 2.51e-95
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDY+KLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 140
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Csor.00g004240 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-53
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDY+KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Csor.00g004240 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-53
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDY+KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Csor.00g004240 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-53
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDY+KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Csor.00g004240 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDY+KLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Csor.00g004240 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MSADEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDY+KLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Csor.00g004240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	2.3e-56	79.23	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.3e-51	68.75	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	2.5e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	5.4e-37	57.85	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	5.4e-37	57.85	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Csor.00g004240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004118.1	8.97e-96	100.00	40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal ...	[more]
XP_038901505.1	1.27e-95	99.29	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022960502.1	3.65e-95	99.29	40S ribosomal protein S12-like [Cucurbita moschata]	[more]
XP_004147008.1	5.19e-95	98.57	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_023512603.1	7.38e-95	98.57	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g004240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYK1	4.34e-96	100.00	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1	[more]
A0A6J1H7K2	1.77e-95	99.29	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111461217 PE=3 SV=...	[more]
A0A5D3BJY5	2.51e-95	98.57	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	2.51e-95	98.57	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A1S3C6L3	2.51e-95	98.57	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]

BLAST of Csor.00g004240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	9.3e-53	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	9.3e-53	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	9.3e-53	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.8e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.8e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 5..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 1.7E-27 score: 95.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 8..140 e-value: 1.1E-54 score: 185.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004240.m01	Csor.00g004240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome