Csor.00g001060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g001060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 10852353 .. 10854392 (-)
RNA-Seq ExpressionCsor.00g001060
SyntenyCsor.00g001060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCAGGTAATGATTGATGATTAGTTTGATTATATATATATATATTGCTACTGTTTTTTGTGATTTCACTTTGTCGACTCGTTAATAATAAACTTGCTTTCTCGATTACCTTGAGATCTGATGGTTTAAATCTTGGCGTTTCGCCGGGCTGGTGACATGCGTCGCCGCCGGCATCTGAACGGTAAAACAGTAGTAAAGATAATCTTGAGAAAATCGAGCTTGAATATTGATTTTTCATTTTTAGATGCCCATTTGCGGTTATGGAGCTCGCTTACGTGTCCCATATGTGCATTTTTTATTTATTTTTCCAGTATCTTTCGTTGACATAGGAGTAAATATGATTTTATTTTTCCATTTTTTTTTACGATCGTCGTGTTCAACGTGAGCCGCACAGGGTTGGTTTGTCGAATATACGTTTATTTTAAGATGTATTACTGTTTATTTTATTAAAACGTAAGCTCTGACATTGGATTTGTTCATTTTCTTTTTTTCAAGAGTATTTCGGATCTTTTAGTACATGTTATATGATATGTTTGTTTTAAAAGTACGGTTGCATGATCCTAAAACGATTGATCTTACTTTAAATATATGCTATCAAGTAATATAATCATAAATTAGCACATTCAAAGTTTAAAAAATATATATTAATTTAGAACAAATTTATAGGACGTTGAGTTTTTTTTATTTATTTTTTTAACCTTTTAATATGTCGACTAGTAATTACCAGATCATAGTAGTTGGGTAGTAAGAATCTCTTAAATTGTACTAGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTAAATAGAATTTCAAAAGAAATATACGGTCACTTCCAATTATCATGTCCATGAATATGTACCTTTATAGTGAAGGACCTCAAACCCACTGGAGTCCTTCGATCTACGGTCACTTCCAATTGTCATGTCCGAACAAGCCCTGACCAGTGACCATACCATCAGCGGTTCTTTTCAAGAAAATTTTCAAAATGGTCTTTGAGCTCTTTTCAGGAAACAACCAATGCCACGGTCCATGACATTGTTTTCCCAAACTTATCGGGTGCCTCTTATTCCATAGGTGTGAAAATATAAGCCTCCTCAGCAGACACCAAGCAGGGTTCGCTAACTAAAATTTAATGGAATCAAGAAATAGAAAAGATTACAAGTGTTAATGAAAAAATCTTCCCAAGAAGAATAATAAGGCTGACGGTTGGTAGAAGAGCATCAAATAAGTGTTTGCTGCATGGCTCATTTATAGACCCTGATAATTGTGCATACTACGACTGTTATAATCAGACATTACATAGTATGCGCATTCGATTGTGCAGGTTAGCAGGGTGTTATGGAATTCTTACAGTTACGTTCTATTTGTTTTATTTCGGACTATAACATCAGACACAGTATTGTTTGTGGAATTTCACTCATTAAATGACTGGCTGTTGACCATACCTATAGCCATTTCCACGTGGTCTGTCCAACAGTCATCTTCCATCATTGCCTCAATCTGCAAGTAAGTAGAGCAGCCATTATTGATTTTCCTCTCCTAAATGTAACTTTTAAATTCCTTGCTGGTATCCAGTTTCAAGATTTGTATCAGTCAGAACAATGTGCAAAGGCAGAAGCGTACTCCCAGTAAGCGATTCGTGGAATAACTCATCATATTTGGAAATCAGGTAAGGTTTCTATATATATTTGCTCATATACATCTACTTTTTGCAAGTATCTTTCTAAACATTCTTAGCAACAGATACAACAGCATATGCCAACTAGTTTCAATTTTTTAAAGCAACAGTGATAACTATGGAATAGTCTTTAATTGCTATTGAATTATATATCAATTCAATCACACTTGAGGATCAAGCAGTTAGTTGTACATGTTTACATCTGAGCCTCTGCCCAGAATCCCTATGAATCCGCACATTCCACAAAGTTGCAGCCTCGAGAGTCAGTTTAACACTTGAGGATCAGGGAGCTAGTTCTCCTTCTCAAGTTAAAGAGGCTGTTCAAGTATATTTGAGGACGCCCTTGGTTGCGTAG

mRNA sequence

ATGATCCAGGTTAGCAGGGTGTTATGGAATTCTTACACCATTTCCACGTGGTCTGTCCAACAGTCATCTTCCATCATTGCCTCAATCTGCAATTTCAAGATTTGTATCAGTCAGAACAATGTGCAAAGGCAGAAGCGTACTCCCACCTCGAGAGTCAGTTTAACACTTGAGGATCAGGGAGCTAGTTCTCCTTCTCAAGTTAAAGAGGCTGTTCAAGTATATTTGAGGACGCCCTTGGTTGCGTAG

Coding sequence (CDS)

ATGATCCAGGTTAGCAGGGTGTTATGGAATTCTTACACCATTTCCACGTGGTCTGTCCAACAGTCATCTTCCATCATTGCCTCAATCTGCAATTTCAAGATTTGTATCAGTCAGAACAATGTGCAAAGGCAGAAGCGTACTCCCACCTCGAGAGTCAGTTTAACACTTGAGGATCAGGGAGCTAGTTCTCCTTCTCAAGTTAAAGAGGCTGTTCAAGTATATTTGAGGACGCCCTTGGTTGCGTAG

Protein sequence

MIQVSRVLWNSYTISTWSVQQSSSIIASICNFKICISQNNVQRQKRTPTSRVSLTLEDQGASSPSQVKEAVQVYLRTPLVA
Homology
[Close]
BLAST of Csor.00g001060 vs. NCBI nr
Match: KAG6576137.1 (hypothetical protein SDJN03_26776, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 5.45e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MIQVSRVLWNSYTISTWSVQQSSSIIASICNFKICISQNNVQRQKRTPTSRVSLTLEDQG 60
          MIQVSRVLWNSYTISTWSVQQSSSIIASICNFKICISQNNVQRQKRTPTSRVSLTLEDQG
Sbjct: 1  MIQVSRVLWNSYTISTWSVQQSSSIIASICNFKICISQNNVQRQKRTPTSRVSLTLEDQG 60

Query: 61 ASSPSQVKEAVQVYLRTPLVA 81
          ASSPSQVKEAVQVYLRTPLVA
Sbjct: 61 ASSPSQVKEAVQVYLRTPLVA 81

The following BLAST results are available for this feature:
BLAST of Csor.00g001060 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g001060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576137.15.45e-49100.00hypothetical protein SDJN03_26776, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g001060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g001060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g001060.m01Csor.00g001060.m01mRNA