Csor.00g000260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g000260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	classical arabinogalactan protein 9-like
Location	Csor_Chr19: 8357518 .. 8358609 (-)
RNA-Seq Expression	Csor.00g000260
Synteny	Csor.00g000260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCCATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGCCCCTCCCACCACCACCACCACCCCTCCTCCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATGTAAGCTTATTATATACTTCGATTCATCATACATTAATCTTCTACTAAATAATTTTTAATGTTATTAAACTAATAATTCTACATTTTCAAATAATTTTTTTTAGATTCATTAAAAAATTTAACTCATTTTTTACATTTTTTTAATTTTAAAATTATTATCCACAAAATCAAGAGTTCATAGATCCTAGACTCGGTGTAAATTAAAATTTTACGGTCATATTTAATAGAAATTATATAATACACACAAAATTAAAAGTTTAAAAATATTTTAAACACCCTTTAAAGCTCATAAACTTTTATGACACGAAGAACAAAAATTTCTAGATCTTCTTGCATTTCACGTTACGTTATTTTTGTTAATCATTATCATCGAACGCTAACACGACATGTCAGATTGACGGACAATATTATTATTATTATTATTATTATTATTATTTGCAGAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAG

mRNA sequence

ATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCCATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGCCCCTCCCACCACCACCACCACCCCTCCTCCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAG

Coding sequence (CDS)

ATGGATCCTCAAGCATTGTTTTGCCTCACTTTGATCTCCATTGCCTTCGCCGTTGCCGGAGCTCAGCCCCCCTCCAGTCCCCCCACCGCCACCCCCGCCCCTCCCACCACCACCACCACCCCTCCTCCCGCCACTCCTCCTCCAGTATCAGCTCCCCCACCTGCCACTCCACCACCAGCCACTCCCCCTCCGGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACCCCTCCTCCAGCTTCCCCACCTCCAGCCACTCCTCCTCCGGCATCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCCACTCCTCCTCCAGCTTCCCCACCACCGGCAACTCCACCACCTGCAACCCCACCACCAGCCACTCCACCTCCTGCACCACTGGCATCACCACCAGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTTGAAGGCGGCTCCAGGTCCGGCCCCAGTTTCGAGCCCGCCGATGCCGTCGGCGGAGGGTCCAGGACCCGCCGGCCCAGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAAGTTGGAGAAAGGAGACAATGGTGGGGAGCATGTTGATTGGAATGGGATATGTATTGATGATGGCTTAG

Protein sequence

MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA

Homology

[Close]

BLAST of Csor.00g000260 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-16
Identity = 121/215 (56.28%), Postives = 139/215 (64.65%), Query Frame = 0


Query: 5   ALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPATPPP 64
           A+ C+ LI+    V G Q P+SPPTATPAPPT TT PP ATPPPVSAPPP T        
Sbjct: 8   AVICIVLIA---GVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVT-------- 67

Query: 65  ASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 124
            SPPP T    +PPPA PP   PP ++PPPASPPPATPPP + PP  PP ASPPPATPPP
Sbjct: 68  TSPPPVT---TAPPPANPP---PPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPP 127

Query: 125 ATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPT 184
                ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP 
Sbjct: 128 V----ATPPPAPLASPPAQVPAPAPTTK--PDSPSPSPSSSPPLPSSDAPGPSTDSISPA 187

Query: 185 PSQ---NDNSGVEKSWRKETMVGSMLIGMGYVLMM 216
           PS    ND +G  K      MV S++ G   V  M
Sbjct: 188 PSPTDVNDQNGASK------MVSSLVFGSVLVWFM 190

[Close]

BLAST of Csor.00g000260 vs. NCBI nr
Match: KAG6571935.1 (hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317 bits (812), Expect = 3.56e-107
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60
           MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA
Sbjct: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60

Query: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120
           TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120

Query: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180
           TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE
Sbjct: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180

Query: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216
           SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216

[Close]

BLAST of Csor.00g000260 vs. NCBI nr
Match: XP_023553858.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284 bits (727), Expect = 2.18e-94
Identity = 201/216 (93.06%), Postives = 202/216 (93.52%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60
           MDPQALFC TLISIAFAVAGAQPPSSPPTAT APPTTTT PPPATPPPVS+PPPA     
Sbjct: 1   MDPQALFCFTLISIAFAVAGAQPPSSPPTATLAPPTTTTAPPPATPPPVSSPPPA----- 60

Query: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120
           TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120

Query: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180
           TPPPAT     PPP PLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE
Sbjct: 121 TPPPAT-----PPPTPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180

Query: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216
           SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 206

[Close]

BLAST of Csor.00g000260 vs. NCBI nr
Match: XP_022952421.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 280 bits (717), Expect = 8.03e-93
Identity = 202/216 (93.52%), Postives = 203/216 (93.98%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60
           MDPQALFC TLI +AFAVAGAQPPSSPPTA   P TTTT PPPATPPPVSAPPPATPP A
Sbjct: 1   MDPQALFCFTLIFVAFAVAGAQPPSSPPTAXXXP-TTTTAPPPATPPPVSAPPPATPP-A 60

Query: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120
           TPPPASPPPATPPPASPPPATPPPASPPPA     SPPPATPPPASPPPATPPPASPPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPA-----SPPPATPPPASPPPATPPPASPPPA 120

Query: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180
           TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE
Sbjct: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180

Query: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216
           SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 209

[Close]

BLAST of Csor.00g000260 vs. NCBI nr
Match: KAG7011623.1 (hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 3.31e-78
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 44  ATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPP 103
           ATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPP
Sbjct: 49  ATPPPVSAPPPATPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPP 108

Query: 104 PASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPV 163
           PASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPV
Sbjct: 109 PASPPPATPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPV 168

Query: 164 SSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216
           SSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 169 SSPPMPSAEGPGPAGPESPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 221

[Close]

BLAST of Csor.00g000260 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa] >TYK06805.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (562), Expect = 2.68e-69
Identity = 172/218 (78.90%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MDPQA-LFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPP 60
           MDP+A L C T ISIAFA+AGAQ PSSPPTATP+PPTT+  PP +TPPPVS+PPPA    
Sbjct: 2   MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 61

Query: 61  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPP 120
           ATPPPA    ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA     SPPP
Sbjct: 62  ATPPPA----ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPA-----SPPP 121

Query: 121 ATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAA-PGPAPVSSPPMPSAEGPGPAG 180
           A+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+KAA PGPAPVSSPP PS E PGPAG
Sbjct: 122 ASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAG 181

Query: 181 PE-SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215
           P+ SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 182 PDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 206

[Close]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL
Match: A0A6J1GK65 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111455113 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 3.89e-93
Identity = 202/216 (93.52%), Postives = 203/216 (93.98%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60
           MDPQALFC TLI +AFAVAGAQPPSSPPTA   P TTTT PPPATPPPVSAPPPATPP A
Sbjct: 1   MDPQALFCFTLIFVAFAVAGAQPPSSPPTAXXXP-TTTTAPPPATPPPVSAPPPATPP-A 60

Query: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120
           TPPPASPPPATPPPASPPPATPPPASPPPA     SPPPATPPPASPPPATPPPASPPPA
Sbjct: 61  TPPPASPPPATPPPASPPPATPPPASPPPA-----SPPPATPPPASPPPATPPPASPPPA 120

Query: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180
           TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE
Sbjct: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE 180

Query: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 216
           SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA
Sbjct: 181 SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMMA 209

[Close]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL
Match: A0A5A7SJX5 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001070 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 1.30e-69
Identity = 172/218 (78.90%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MDPQA-LFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPP 60
           MDP+A L C T ISIAFA+AGAQ PSSPPTATP+PPTT+  PP +TPPPVS+PPPA    
Sbjct: 2   MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 61

Query: 61  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPP 120
           ATPPPA    ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA     SPPP
Sbjct: 62  ATPPPA----ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPA-----SPPP 121

Query: 121 ATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAA-PGPAPVSSPPMPSAEGPGPAG 180
           A+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+KAA PGPAPVSSPP PS E PGPAG
Sbjct: 122 ASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAG 181

Query: 181 PE-SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215
           P+ SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 182 PDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 206

[Close]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL
Match: A0A1S3BZW9 (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 1.30e-69
Identity = 172/218 (78.90%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MDPQA-LFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPP 60
           MDP+A L C T ISIAFA+AGAQ PSSPPTATP+PPTT+  PP +TPPPVS+PPPA    
Sbjct: 2   MDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPA---- 61

Query: 61  ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPP 120
           ATPPPA    ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA     SPPP
Sbjct: 62  ATPPPA----ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPA-----SPPP 121

Query: 121 ATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAA-PGPAPVSSPPMPSAEGPGPAG 180
           A+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK+KAA PGPAPVSSPP PS E PGPAG
Sbjct: 122 ASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAG 181

Query: 181 PE-SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215
           P+ SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 182 PDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 206

[Close]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL
Match: A0A6J1I8J9 (classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC111470982 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 5.82e-67
Identity = 168/262 (64.12%), Postives = 170/262 (64.89%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTT-------------------- 60
           MDPQALFC TLISIAFAVAGAQPPSSPPTATPAPP                         
Sbjct: 1   MDPQALFCFTLISIAFAVAGAQPPSSPPTATPAPPXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  --------------------------PPPATPPPVSAPPPATPPPATPPPASPPPATPPP 120
                                                                       
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------- 120

Query: 121 ASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPP 180
                ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPP
Sbjct: 121 -----ATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPP 180

Query: 181 APLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEK 216
           APLASPPAAVPAPAPSKKKLKAAPG APVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEK
Sbjct: 181 APLASPPAAVPAPAPSKKKLKAAPGSAPVSSPPMPSAEGPGPAGPESPTPSQNDNSGVEK 223

[Close]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL
Match: A0A0A0K6D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 3.03e-65
Identity = 162/217 (74.65%), Postives = 179/217 (82.49%), Query Frame = 0


Query: 1   MDPQALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPA 60
           MDP+AL C TLISIAF +A AQ PSSPPTATP+PPTT      +TPPPVS+PPPA     
Sbjct: 1   MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTT------STPPPVSSPPPA----- 60

Query: 61  TPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPA 120
                    ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA+PPPA+PPPA
Sbjct: 61  ---------ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPA 120

Query: 121 TPPPATPPPATPPPAPLASPPAAVPAPAPSKKKLKAA-PGPAPVSSPPMPSAEGPGPAGP 180
           +PPP    PATPPPAPLASPP AVPAPAPSKKK+KAA P P+PVSSPP PS E PGPAGP
Sbjct: 121 SPPP----PATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGP 180

Query: 181 E-SPTPSQNDNSGVEKSWRKETMVGSMLIGMGYVLMM 215
           + SPTPSQNDNSGVEK WRKE+MVGS++IGMGYV +M
Sbjct: 181 DQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM 193

[Close]

BLAST of Csor.00g000260 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-17
Identity = 121/215 (56.28%), Postives = 139/215 (64.65%), Query Frame = 0


Query: 5   ALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPATPPP 64
           A+ C+ LI+    V G Q P+SPPTATPAPPT TT PP ATPPPVSAPPP T        
Sbjct: 8   AVICIVLIA---GVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVT-------- 67

Query: 65  ASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 124
            SPPP T    +PPPA PP   PP ++PPPASPPPATPPP + PP  PP ASPPPATPPP
Sbjct: 68  TSPPPVT---TAPPPANPP---PPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPP 127

Query: 125 ATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPT 184
                ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP 
Sbjct: 128 V----ATPPPAPLASPPAQVPAPAPTTK--PDSPSPSPSSSPPLPSSDAPGPSTDSISPA 187

Query: 185 PSQ---NDNSGVEKSWRKETMVGSMLIGMGYVLMM 216
           PS    ND +G  K      MV S++ G   V  M
Sbjct: 188 PSPTDVNDQNGASK------MVSSLVFGSVLVWFM 190

[Close]

BLAST of Csor.00g000260 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-17
Identity = 112/185 (60.54%), Postives = 127/185 (68.65%), Query Frame = 0


Query: 5   ALFCLTLISIAFAVAGAQPPSSPPTATPAPPTTTTTPPPATPPPVSAPPPATPPPATPPP 64
           A+ C+ LI+    V G Q P+SPPTATPAPPT TT PP ATPPPVSAPPP T        
Sbjct: 8   AVICIVLIA---GVTG-QAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVT-------- 67

Query: 65  ASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 124
            SPPP T    +PPPA PP   PP ++PPPASPPPATPPP + PP  PP ASPPPATPPP
Sbjct: 68  TSPPPVT---TAPPPANPP---PPVSSPPPASPPPATPPPVASPP--PPVASPPPATPPP 127

Query: 125 ATPPPATPPPAPLASPPAAVPAPAPSKKKLKAAPGPAPVSSPPMPSAEGPGPAGPE-SPT 184
                ATPPPAPLASPPA VPAPAP+ K    +P P+P SSPP+PS++ PGP+    SP 
Sbjct: 128 V----ATPPPAPLASPPAQVPAPAPTTK--PDSPSPSPSSSPPLPSSDAPGPSTDSISPA 166

Query: 185 PSQND 189
           PS  D
Sbjct: 188 PSPTD 166

The following BLAST results are available for this feature:

BLAST of Csor.00g000260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5S0	1.6e-16	56.28	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]

BLAST of Csor.00g000260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571935.1	3.56e-107	100.00	hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023553858.1	2.18e-94	93.06	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022952421.1	8.03e-93	93.52	classical arabinogalactan protein 9-like [Cucurbita moschata]	[more]
KAG7011623.1	3.31e-78	100.00	hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008455018.1	2.68e-69	78.90	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo] >KAA0031352.1 clas...	[more]

BLAST of Csor.00g000260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK65	3.89e-93	93.52	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7SJX5	1.30e-69	78.90	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BZW9	1.30e-69	78.90	classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4...	[more]
A0A6J1I8J9	5.82e-67	64.12	classical arabinogalactan protein 9-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0K6D8	3.03e-65	74.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1	[more]

BLAST of Csor.00g000260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14890.1	1.2e-17	56.28	arabinogalactan protein 9	[more]
AT2G14890.2	5.7e-17	60.54	arabinogalactan protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 66..83 score: 45.56 coord: 46..62 score: 44.71 coord: 23..44 score: 49.09
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..181
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 92..215 coord: 1..105
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 92..215 coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g000260.m01	Csor.00g000260.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane