Csor.00g000240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g000240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	SWIB domain-containing protein
Location	Csor_Chr19: 8351181 .. 8352605 (-)
RNA-Seq Expression	Csor.00g000240
Synteny	Csor.00g000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGGTAGACTCTCTCCTTCCTCTGTTGTTTTTCATTTTTCTTTTTTCTTTCGTCGTTGTTCTTTCATTCATCTGTTGATGTTACTAGTTTTCGGAGAATAATCCTTCAAGTTTATGGTATTTTTTTTCTCGAGTTCTGTTGTTTGATGTATCGCCATGGATGAAAAATATCTTGTGCTGAAATTAATCCAATATCTCCTTCCATAACAAGACATTGGATCTTGTTCTTTAGAATTTTCTTACAGTTAAATCATTTGTTTCTTCCACTCTTAAATCATTTGTTTTGAAGATGCTTTAGATGTGACCTTTTTTATTAGTGAAGTTCGTAAGTTTAGGAGATTTTTGCTCAGAGTTGTTGGGTTCTGAGGAGGCTGTAAGATGTATTGGCATGGCTTGAAAATGTCTTGGTCTGAAACGAGGGCTTATACACCTAAGTCCACTGCTAGCCGATGTTGTCATACCGGGCGGTGTGCCATCGTAGACAATGCTGGTCCTGGAAGGGGGTGGATTGTGAGATCCCGCGTCGATGGAAAGCATAGAACCTCACAACCTTGAAGTTGAGTCGATTTGTTGTTTTGTTTTCGATTATTTCTTCATTCTTATAGAAAGTTAGTGACAAAAAAAATCATAATTTGCGACATAGTTAGCTCCTTAGAAATCAAGGGTTCAAAGCACGAAACCCCCCCCATAACTCCATAACTCCAATGTCGAGGTGATTCTTTAATCATAATTTGCAAAGTAGGCTCCTTAGAAATCAGGGTTTCAAAGCACGGAACCCCAAAACCCCGAAGTCGAGTTGATTTGTTGTTTTGTTTATGATAATTTCTTCATTCTTATAGAAACCTAGTGACAAGAAAGCCATAGTTTGCGACATAGTTGGCTCCTTAGAAAATCATTTAATTTGTGACGTAGTTAGCTCCCTAGAAATCAAGGGTTCAAAGCATGGAACCCCAGAACCTTGAACTCGAGTCGATTCATTGTTTTGTTTCTAATAATTTCTTCATTCTTACAGAAACCCAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGA

mRNA sequence

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGA

Coding sequence (CDS)

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGA

Protein sequence

MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL

Homology

[Close]

BLAST of Csor.00g000240 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-10
Identity = 26/54 (48.15%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGK 122
           +S  +Q  +G+ E+ RT+ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

[Close]

BLAST of Csor.00g000240 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09
Identity = 24/55 (43.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 64  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIF 119
           KP ++SP++   +G  ++SR + +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of Csor.00g000240 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFL 127
           +S  + +L+G  E++RTE ++ +W +IK HNLQ P++KK I+CDEKL+ I G        
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 128 EIAGLISSH 137
           E+  +++SH
Sbjct: 186 EMHKILASH 192

[Close]

BLAST of Csor.00g000240 vs. NCBI nr
Match: KAG6571933.1 (hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011621.1 TRI1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (686), Expect = 1.68e-90
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 267 bits (682), Expect = 6.86e-90
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265 bits (676), Expect = 5.64e-89
Identity = 135/138 (97.83%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIWTHIKEHNLQKP+DKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. NCBI nr
Match: XP_022972543.1 (uncharacterized protein LOC111471082 [Cucurbita maxima])

HSP 1 Score: 258 bits (660), Expect = 1.55e-86
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKKIIMCDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. NCBI nr
Match: XP_038888173.1 (uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida])

HSP 1 Score: 243 bits (619), Expect = 2.78e-80
Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL
Match: A0A6J1GL33 (uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC111455244 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 3.32e-90
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL
Match: A0A6J1IAA1 (uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 7.53e-87
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKKIIMCDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLISSHFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

[Close]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL
Match: A0A6J1JNZ3 (uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 1.49e-75
Identity = 115/138 (83.33%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATSSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL
Match: A0A6J1EIX1 (uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC111434699 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 1.49e-75
Identity = 115/138 (83.33%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

[Close]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL
Match: A0A6J1D4Q4 (uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017291 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 1.87e-69
Identity = 112/138 (81.16%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PR
Sbjct: 36  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPR 95

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120
           GIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ+P +KKII+CDEKLKKIFGG
Sbjct: 96  GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGG 155

Query: 121 KDEVGFLEIAGLISSHFL 138
           KDEVGFL+IAGLIS HFL
Sbjct: 156 KDEVGFLDIAGLISPHFL 171

[Close]

BLAST of Csor.00g000240 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-30
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 33  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIW 92
           P   LR  R +T A+ S++ TA++ R PRGIMKPR +SPEMQ +V  PEI+RT+ALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 93  THIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL 139
            +IKEH+LQ P +K+ I+CDEKLKKIF G+D VGFLEIA LI  HFL
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

[Close]

BLAST of Csor.00g000240 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-30
Identity = 69/122 (56.56%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 20  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALV 79
           S++  S  HP      NLR  R +T A+A++    TT  +R+PRGIMKPR +S  MQ +V
Sbjct: 28  SSLRLSPNHP-----TNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVV 87

Query: 80  GAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSH 139
           G PEI RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKKIF GK+ VGFLEIA LI  H
Sbjct: 88  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPH 144

[Close]

BLAST of Csor.00g000240 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           M+ V+  V      L+A AS   SS+        P  +          +   + + + PR
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPR 60

Query: 61  --GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIF 120
             GI K   +SP +   +G  E SRT+A+K IWT+IK H+LQ P+DK+ I CDE LK IF
Sbjct: 61  STGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIF 120

Query: 121 GGKDEVGFLEIAGLISSHFL 139
            GKD+VGFLEI+ L+S HF+
Sbjct: 121 EGKDKVGFLEISKLLSPHFV 140

[Close]

BLAST of Csor.00g000240 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 41  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ 100
           R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF 138
            P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

[Close]

BLAST of Csor.00g000240 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.4e-18
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 41  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ 100
           RT+   +A+ +    + + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 101 KPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHF 138
            P++KK I CD+KLK IF GKD+VG  EI  L+S HF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

The following BLAST results are available for this feature:

BLAST of Csor.00g000240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	9.4e-10	48.15	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	2.1e-09	43.64	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	4.7e-09	40.58	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of Csor.00g000240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571933.1	1.68e-90	100.00	hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952608.1	6.86e-90	99.28	uncharacterized protein LOC111455244 [Cucurbita moschata]	[more]
XP_023553864.1	5.64e-89	97.83	uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]	[more]
XP_022972543.1	1.55e-86	96.38	uncharacterized protein LOC111471082 [Cucurbita maxima]	[more]
XP_038888173.1	2.78e-80	86.96	uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL33	3.32e-90	99.28	uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1IAA1	7.53e-87	96.38	uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082...	[more]
A0A6J1JNZ3	1.49e-75	83.33	uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197...	[more]
A0A6J1EIX1	1.49e-75	83.33	uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC1114346...	[more]
A0A6J1D4Q4	1.87e-69	81.16	uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Csor.00g000240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14880.1	2.2e-30	61.68	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	6.4e-30	56.56	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	3.9e-19	40.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.1e-18	47.42	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	7.4e-18	43.30	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..138 e-value: 2.2E-27 score: 107.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..137 e-value: 1.3E-27 score: 95.4
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 61..138 score: 21.119787
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 55..138 e-value: 2.9E-25 score: 89.9
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 55..137
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN-RELATED	coord: 7..138
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..138
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 66..137 e-value: 1.2838E-34 score: 113.022

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g000240.m01	Csor.00g000240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus