CsaV3_UNG223590 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG223590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Tetratricopeptide-like helical
Location	scaffold69: 179061 .. 179314 (-)
RNA-Seq Expression	CsaV3_UNG223590
Synteny	CsaV3_UNG223590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

mRNA sequence

GCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

Coding sequence (CDS)

GCTTTGGCAATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTGAAGAATGGAAAACAAATACTCATCAAATGGAGAACGACGACATAATTCCACCGCATTTATTAGCCGACGAAGACGAAGAAAATATAGCAGCCAAGGAATTATGCATTTCCGGTCACCGAAAAGATGACGGACTGGTGGTGTTTTGTGCTTTCCGGCGATCATATGCAATTTTAAGAAAAATGATGGAGAAGAGAGCTTCCTAA

Protein sequence

ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDGLVVFCAFRRSYAILRKMMEKRAS*

Homology

[Close]

BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KAE8637184.1 (hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothetical protein CSA_023968, partial [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60

Query: 61 LVVFCAFRRSYAILRKMMEKRAS 84
          LVVFCAFRRSYAILRKMMEKRAS
Sbjct: 61 LVVFCAFRRSYAILRKMMEKRAS 83

[Close]

BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KAE8649147.1 (hypothetical protein Csa_014525, partial [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 7  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 66

Query: 61 LV 63
          LV
Sbjct: 67 LV 68

[Close]

BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-09
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN------IAAKELCISG 60
          ALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++      ++     ++G
Sbjct: 7  ALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAG 66

Query: 61 -----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 84
               HR+D G      F      L K +EKRAS
Sbjct: 67 FFDSLHREDGGADDIHCFWGILCSLSKSLEKRAS 96

[Close]

BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-09
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE----NIAAKELCISGHR 60
          ALAMAGIDSNEWAMDAEEW+ N  +ME D  IPPHLLADED+E    +        S  R
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN--EMEKD--IPPHLLADEDDEEDEMSTKFPATRCSCCR 66

Query: 61 KDDGLVVFCAFRRSYAILRKMMEKR 82
          KDDG+            LRK+ EKR
Sbjct: 67 KDDGVGGVSCSPTIMWHLRKITEKR 87

[Close]

BLAST of CsaV3_UNG223590 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN------IAAKELCISG 60
          ALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++      ++     ++G
Sbjct: 7  ALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAG 66

Query: 61 -----HRKDDGLVVFCAFRRSYAILRKMMEKRAS 84
                R+D G      F      L K +EKRAS
Sbjct: 67 FFDSLRREDGGAHDIHCFWGILCSLSKSLEKRAS 96

[Close]

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 60
          ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG
Sbjct: 7  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRKDDG 66

Query: 61 LVVFCAFRRSYAILRKMMEKRAS 84
          LVVFCAFRRSYAILRKMMEKRAS
Sbjct: 67 LVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE----NIAAKELCISGHR 60
          ALAMAGIDSNEWAMDAEEW+ N  +ME D  IPPHLLADED+E    +        S  R
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN--EMEKD--IPPHLLADEDDEEDEMSTKFPATRCSCCR 66

Query: 61 KDDGLVVFCAFRRSYAILRKMMEKR 82
          KDDG+            LRK+ EKR
Sbjct: 67 KDDGVGGVSCSPTIMWHLRKITEKR 87

[Close]

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAGIDSNEWAMDAEEW+ N       D++PPHLLADE+++
Sbjct: 7  ALAMAGIDSNEWAMDAEEWERN-----EIDVVPPHLLADEEDD 44

[Close]

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 7  ALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 44

[Close]

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAGIDSNEW MDA+EW+ N       D++PPHLLADE+++
Sbjct: 7  ALAMAGIDSNEWGMDAQEWERN-----EIDVVPPHLLADEEDD 44

[Close]

BLAST of CsaV3_UNG223590 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 1  ALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEE 44
          ALAMAG+D  EW +  EEW+        + ++P HLLAD+ +E
Sbjct: 3  ALAMAGVDYQEWGLSIEEWEL------QESVVPLHLLADDFKE 39

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG223590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637184.1	8.7e-40	100.00	hypothetical protein CSA_023573, partial [Cucumis sativus] >KAE8637242.1 hypothe...	[more]
KAE8649147.1	1.7e-27	100.00	hypothetical protein Csa_014525, partial [Cucumis sativus]	[more]
KAG7015383.1	6.1e-09	46.81	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022943015.1	6.1e-09	54.12	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KAG6577295.1	5.2e-08	45.74	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_UNG223590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG223590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU90	4.2e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]
A0A6J1FX98	2.9e-09	54.12	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KWE7	1.0e-06	67.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	6.8e-06	62.79	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	6.8e-06	62.79	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of CsaV3_UNG223590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	4.8e-04	44.19	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG223590.1	CsaV3_UNG223590.1	mRNA