CsaV3_UNG223510 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG223510
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	WEB family protein
Location	scaffold69: 141116 .. 141343 (+)
RNA-Seq Expression	CsaV3_UNG223510
Synteny	CsaV3_UNG223510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATGAGATCAATACAAAGCTTAATTCTGAGTTGGAATCGAGAAACAAAGAGTCCGCCGTAGGAAAGGCTGAGGGATTGGAATCTGTGAAGAGAAACAAAAACTCCGCCGTGGAAAAGGCTGAGGGATTGAAATCTGTGAAGAGAAACAAAGACTCCGCCGTGGAAAATGCTGAGGGATTAAAGCTTCAATTGGCAGAGAAACAGAGCAGCTCTCTGTTTTGA

mRNA sequence

ATGGCGAATGAGATCAATACAAAGCTTAATTCTGAGTTGGAATCGAGAAACAAAGAGTCCGCCGTAGGAAAGGCTGAGGGATTGGAATCTGTGAAGAGAAACAAAAACTCCGCCGTGGAAAAGGCTGAGGGATTGAAATCTGTGAAGAGAAACAAAGACTCCGCCGTGGAAAATGCTGAGGGATTAAAGCTTCAATTGGCAGAGAAACAGAGCAGCTCTCTGTTTTGA

Coding sequence (CDS)

ATGGCGAATGAGATCAATACAAAGCTTAATTCTGAGTTGGAATCGAGAAACAAAGAGTCCGCCGTAGGAAAGGCTGAGGGATTGGAATCTGTGAAGAGAAACAAAAACTCCGCCGTGGAAAAGGCTGAGGGATTGAAATCTGTGAAGAGAAACAAAGACTCCGCCGTGGAAAATGCTGAGGGATTAAAGCTTCAATTGGCAGAGAAACAGAGCAGCTCTCTGTTTTGA

Protein sequence

MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAEGLKLQLAEKQSSSLF*

Homology

[Close]

BLAST of CsaV3_UNG223510 vs. NCBI nr
Match: KAE8637234.1 (hypothetical protein CSA_021629 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
          MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60

Query: 61 GLKLQLAEKQSSSLF 76
          GLKLQLAEKQSSSLF
Sbjct: 61 GLKLQLAEKQSSSLF 75

[Close]

BLAST of CsaV3_UNG223510 vs. NCBI nr
Match: XP_031745710.1 (putative WEB family protein At1g65010, chloroplastic [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
          MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60

Query: 61 GLKLQLAEKQSSSL 75
          GLKLQLAEKQSSSL
Sbjct: 61 GLKLQLAEKQSSSL 74

[Close]

BLAST of CsaV3_UNG223510 vs. NCBI nr
Match: KAE8637164.1 (hypothetical protein CSA_018795 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
          MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 27 MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 86

Query: 61 GLKLQLAEK 70
          GLKLQLAEK
Sbjct: 87 GLKLQLAEK 95

[Close]

BLAST of CsaV3_UNG223510 vs. NCBI nr
Match: XP_031740610.1 (WEB family protein At5g16730, chloroplastic isoform X2 [Cucumis sativus] >XP_031745663.1 WEB family protein At5g16730, chloroplastic-like isoform X2 [Cucumis sativus] >XP_031745666.1 WEB family protein At5g16730, chloroplastic-like isoform X2 [Cucumis sativus] >KAE8637145.1 hypothetical protein CSA_004627 [Cucumis sativus] >KGN53217.2 hypothetical protein Csa_015102 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
          MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 27 MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 86

Query: 61 GLKLQLAEK 70
          GLKLQLAEK
Sbjct: 87 GLKLQLAEK 95

[Close]

BLAST of CsaV3_UNG223510 vs. NCBI nr
Match: XP_031740609.1 (WEB family protein At5g16730, chloroplastic isoform X1 [Cucumis sativus] >XP_031745662.1 WEB family protein At5g16730, chloroplastic-like isoform X1 [Cucumis sativus] >XP_031745665.1 WEB family protein At5g16730, chloroplastic-like isoform X1 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
           MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 36  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 95

Query: 61  GLKLQLAEK 70
           GLKLQLAEK
Sbjct: 96  GLKLQLAEK 104

[Close]

BLAST of CsaV3_UNG223510 vs. ExPASy TrEMBL
Match: A0A0A0KXS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026890 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 60
          MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE
Sbjct: 27 MANEINTKLNSELESRNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVENAE 86

Query: 61 GLKLQLAEK 70
          GLKLQLAEK
Sbjct: 87 GLKLQLAEK 95

[Close]

BLAST of CsaV3_UNG223510 vs. ExPASy TrEMBL
Match: A0A5A7TNL1 (WEB family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00040 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   MANEINTKLNSELES--RNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVEN 60
           MANEINTKLNSELES  RNKE AV KAEGLESVKRNK S VEKAE L+SVKRNK+SA+E 
Sbjct: 31  MANEINTKLNSELESVKRNKEFAVEKAEGLESVKRNKESTVEKAESLESVKRNKESAMEK 90

Query: 61  AEGLKLQLAEK 70
           AEGL+LQLAEK
Sbjct: 91  AEGLELQLAEK 101

[Close]

BLAST of CsaV3_UNG223510 vs. ExPASy TrEMBL
Match: A0A1S3BYC2 (WEB family protein At5g16730, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494423 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   MANEINTKLNSELES--RNKESAVGKAEGLESVKRNKNSAVEKAEGLKSVKRNKDSAVEN 60
           MANEINTKLNSELES  RNKE AV KAEGLESVKRNK S VEKAE L+SVKRNK+SA+E 
Sbjct: 31  MANEINTKLNSELESVKRNKEFAVEKAEGLESVKRNKESTVEKAESLESVKRNKESAMEK 90

Query: 61  AEGLKLQLAEK 70
           AEGL+LQLAEK
Sbjct: 91  AEGLELQLAEK 101

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG223510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637234.1	2.0e-27	100.00	hypothetical protein CSA_021629 [Cucumis sativus]	[more]
XP_031745710.1	1.3e-26	100.00	putative WEB family protein At1g65010, chloroplastic [Cucumis sativus]	[more]
KAE8637164.1	2.7e-24	100.00	hypothetical protein CSA_018795 [Cucumis sativus]	[more]
XP_031740610.1	2.7e-24	100.00	WEB family protein At5g16730, chloroplastic isoform X2 [Cucumis sativus] >XP_031...	[more]
XP_031740609.1	2.7e-24	100.00	WEB family protein At5g16730, chloroplastic isoform X1 [Cucumis sativus] >XP_031...	[more]

BLAST of CsaV3_UNG223510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG223510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXS4	1.3e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026890 PE=4 SV=1	[more]
A0A5A7TNL1	3.5e-17	83.10	WEB family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G0...	[more]
A0A1S3BYC2	3.5e-17	83.10	WEB family protein At5g16730, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494...	[more]

BLAST of CsaV3_UNG223510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG223510.1	CsaV3_UNG223510.1	mRNA