CsaV3_7G034630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G034630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 21910067 .. 21911383 (+)
RNA-Seq Expression	CsaV3_7G034630
Synteny	CsaV3_7G034630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGATAAGACGACGCGGTTTTTGGTTGTTATAAGTTTGTTTTATTTTAAAATTCATTTGCTTATTTATAAGAAATCAACATTTAATTGTCAATGTCAACATTAAAACAATAATGACAAATTTATATGCACAAAATGGGCGCATTAGCTGTCACCTTTTGGACTTAAATCAAATCCCTATGATAAGCTTTGATTGTAAGTATATAACCCTTTAAAATTCACCATTCAAATCTTAAACTTATACATGTTGGTGTTGGGATACCTAATATTCGCTTTAAAGTATTTTATTGGGGTTGTTTGATGCTCAAGCATGGATTATAGACCTATTAGATTTTATGATGTGTGGACGTTCAATTAATGAGATCATAATTGTATTTAGGTTGTAATAGTTTGTTTTTAAAATAAACAATGTTAGCATGATGTTGCAAAAAGGAAAACAGATAACTGAAATAAAATATCAAATATTGGAATTTCATTTGGAAATCAAGTATGTTGATGACCTAAAAGATGTAGTGATCCAAATTATCGTAGTAGGTCACTAGAAAATATGATAGATAAAAAAATCAACTCGATTGACCAAACAAGAGTTGATTAATCGGAGAACAAGAGAGGTTAATTGATATCGATTTACGCAAAATTTGAAATAAAAAATTTAAAAAACAATTCAAAGTATTAGATGGACTTTTATTCGTACGTTGATCATAGTCAATTATGTGGTGGATTAGTCGAAAAATCAAAAATATATTTGTCACCTAACATTTGAGATATTTTTGAAACAAAAATGGAGGGGATATTATTTTTTATAATTTTACCAAAATTTTGTTTTATGGTTGGATAAAACCCTTCAAAAACCCCTTACACACAAAGGTAGTAAATTATAATTTTTCTCCAAAATGGGCTAAATTCGTAAATAAATGATAAAAGAAAGAGAAGAAGAAGAAGAAGAAGAAAAGCCCCTAAACCCTTTCTCTCTCTTCTTCTCCTTCTCCTCCTCTCATATATCTTTTTTGCCGCCACGCCTCTCAGGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACGAATCGCCTTCGATGTATGTCTGAATCAAATGTTTCTTTCTTTTATTTGTTATTTTGTCGATTCAAGAATCGTTAACTAGTAAATTTTGAGTGATTCTAATGGTTTCCTTTTTGTATTTGTTCTTTTCATGGACGGACCTGACCCTTCTTTGCCCTTGTTTCCTTATTCAGCGTGTATTGCTTCAACCGCTGAAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTCCATTGCTGTCGGACTGTAA

mRNA sequence

ATGCGTGATAAGACGACGCGGTTTTTGGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACGAATCGCCTTCGATCGTGTATTGCTTCAACCGCTGAAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTCCATTGCTGTCGGACTGTAA

Coding sequence (CDS)

ATGCGTGATAAGACGACGCGGTTTTTGGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACGAATCGCCTTCGATCGTGTATTGCTTCAACCGCTGAAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTCCATTGCTGTCGGACTGTAA

Protein sequence

MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL*

Homology

[Close]

BLAST of CsaV3_7G034630 vs. NCBI nr
Match: KGN45510.1 (hypothetical protein Csa_016688 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL 53
          MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL
Sbjct: 1  MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL 52

[Close]

BLAST of CsaV3_7G034630 vs. ExPASy TrEMBL
Match: A0A0A0K754 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450670 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.8e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL 53
          MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL
Sbjct: 1  MRDKTTRFLAATPLRPPRQPRIAFDRVLLQPLKPPPVPTENKSPPSSIAVGL 52

The following BLAST results are available for this feature:

BLAST of CsaV3_7G034630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45510.1	1.4e-19	100.00	hypothetical protein Csa_016688 [Cucumis sativus]	[more]

BLAST of CsaV3_7G034630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G034630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K754	6.8e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450670 PE=4 SV=1	[more]

BLAST of CsaV3_7G034630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G034630.1	CsaV3_7G034630.1	mRNA