CsaV3_7G031930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G031930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S12
Location	chr7: 20273349 .. 20275592 (-)
RNA-Seq Expression	CsaV3_7G031930
Synteny	CsaV3_7G031930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAAGCAAGCCCATTCATATGATACCAAAAGCTTTCATAAACCCCTAATCTTTTCTACAAACTCCCTCCTCTCAGTTCTGCCGCCGCCGCCATCTCTCAATCTCTGGTAAGCTTCTCTATCTCTCTCTAAATCTCCGGCCAAAATTTCTTTTTCTCCTCCAGCATGTCCATTTGTATCCCCTTCTATTTCTCCAAAAATACGCAGATAGTCTCCCTTCATCTTGCTCTTCCTTAGATTTCCATCTCGCAGCTGTTTATTGTGATCTCTTACTTGTTTGATTATCATATTAAAAAATCCAAACTGATTAGTGGTTTACTCCTTATGTCTTTGTTCTTGATTCAAACTGATTGTTATAGGTTTCATTATATTTCTTTTATCTAATTATTTAGTTTTTTTTTTTTTTTTGTGTCTTACAGATTTTCTTGCAATTGGAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCGTGAGTGGATACTTGTTTATTATAATTGCTAGCTTCCACGTTAATTCCCACTTTTGTGTTGCATCTGAGCGCGATTTTTCCCCAATATCTTATAAATAGACGATGACTTGTTTTGTTTAGAAGTAGAATCTGCTGCTTGCAATCGACTATTAAGAGTGTTCGACATTCTTCTGTATGAATAAGAATAGAGTTGGGAATATGATTTCTGAAGGCGACGAGGCAATCAATCTTGATGCTTCGAGATATAAATTATATGTTTTGGTCATTTGTCAAATAAAATGTAGATTTTTGAAGTTCAGTTTGTTTTATACGTTGATCTGTAATAGATTTTTGTATGGGACTAAGGGTTGCTGGGGAGATTGCTATATTACACGTTCATGCGAACTGTTATTGAAGTTGAGGCATTTCTTTTTGGTAATGTCAGATATTTGAGACGATGACTAGGCAATTGTCTTCGATTGTTGAAAGAACCACGCCTTTGAGAAGTACTGTATTTGTTTTTCAACTTGGTTTTTTTTGCAGTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTAGAGTCAGTTTTTAACATTCATTCTGCCGTAAGATGGTATCCCCACATTGCTCTCTTTTCATTGATATCTGGCACCACTATGCTATATTATAATCATTCTACCAAGATTTAAGCTGTATCTTTCATTGTTTAGCTACATGTAAAACTTTGTTCTGGATTATATAAGAATATAAACAAAATCTATATATGCAAATCCAGTGGATTTGTTTGATCCTCATATAAATTGACCTGCTAACACTAGCGTGACGTTTTAGTGTCTGAATTCTACACCATCAGCATCTGCCTATTTTAGTAGCAAAAGCTTATAATGGGTTCAGGAGAATTCATTTTTTTCTTCCATATTTGGTCAATTGCAGCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGTACATATATATGTCCATTCACTTCCGTAGCAAACATCCTGTTCTTTCTCTTTTCATACAACCGGTTTACTTGAGTTTTGAATGTGTTTGTCCACAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGATTACCAAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTTAACACCTACCTACCTTCACTCTATAATGTGTTTTTCTTTGTTGATTGATTGGAAAGACTAGTTTTTATCATCATCGGACTCCATTGACGTGGAGCTCATTATCATTCTGGCCAACAGAACAATTTATTTGTCAAGAGTCTTCTTGTGCCCATGGGAAAAGTAGAATTGATATTTATCATCTTTTTTTTCTCTTCCTGATTTCATATCTTGATTTTATTTACCCCGTTTTATTTCTAATTTGGTTCAAAATGACAATTATAC

mRNA sequence

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN*

Homology

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BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_004135873.1 (40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_015906 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 5.9e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_008461174.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >TYK10523.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

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BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAP PALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 102/134 (76.12%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 6   VAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQ+V++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHN +L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

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BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-51
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

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BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.6e-49
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

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BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.2e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 9.2e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL
Match: A0A5A7UX10 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001740 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL
Match: A0A1S3CDM3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of CsaV3_7G031930 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CsaV3_7G031930 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CsaV3_7G031930 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of CsaV3_7G031930 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-50
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of CsaV3_7G031930 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-50
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of CsaV3_7G031930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135873.1	5.9e-73	100.00	40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa...	[more]
XP_008461174.1	5.0e-72	98.57	PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal ...	[more]
XP_022954225.1	1.4e-71	98.57	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_038896811.1	4.2e-71	97.86	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022991483.1	4.2e-71	97.86	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of CsaV3_7G031930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	2.6e-55	76.12	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	3.9e-51	68.75	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	3.6e-49	69.23	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	9.2e-37	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	9.2e-37	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of CsaV3_7G031930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA08	2.8e-73	100.00	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]
A0A5A7UX10	2.4e-72	98.57	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CDM3	2.4e-72	98.57	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1	[more]
A0A6J1GQC3	7.0e-72	98.57	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A6J1JWC7	2.0e-71	97.86	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]

BLAST of CsaV3_7G031930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	2.7e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	2.7e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	2.7e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	2.6e-50	69.23	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	2.6e-50	69.23	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 1.5E-26 score: 91.9
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 4..140 e-value: 2.3E-53 score: 181.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G031930.1	CsaV3_7G031930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome