CsaV3_7G031790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G031790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 20174071 .. 20175362 (-)
RNA-Seq Expression	CsaV3_7G031790
Synteny	CsaV3_7G031790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCTTGTCACTGCCTTGGAAAAAATTTGGAGCCATCTCTTGAACCTTCATGCCTTGCCTGCTTCTTGTTAGACTTCTTTGAATATGGATTTTTAATATCTAGGTCATTCTCATGATATTGGTGCAAACGAAAATATCGTCTTTCTCTACAATACAATCAAAATAATTGCTTGTTCGGCTGTTTTTCTTTTGATGACTTTATTGGGTTTATATCGTTGAATGTTCTACACTATTGTTTTCCTTCAAGACATAGAAATACCACCCCTAAAATAGTACGCGTAAGATTGAATTTTTTCCAAGAGATCTGATTAATGTGTTCAAAAGTGCATTTTTGGATTACTTGTACATGATGTATTGAAATAGATGATAGTTTCTTGTTTGTTGAGTAAGCTTTTGGCAGTTGCCTTCTATAAGATGGCTAGTTTTGGGGTTTAACGTAAAATAGCCAATTTGGCTTGACTTCTCTATTGCTCGTGGCTTGTATTGTAGTCCTATTGACTAAGAATGTTTTGGGAAGGGTTGGTTGCCTCATTCTTACATCGGTTGGTAATGTAAGCGTAGGAGAACTACATTAGGGTTGGTCATTTGGTCACATTTGTTTGCCTCTCTTTGTACTAGAGCTGAGAGATGGATAAAGTATCATCGTAATGCAAAGTAGAATTCTAACAGTTTCTCCAAGTCAAAATAACCATGAGCAGCCAAGTCTCTTATTTACTACGAAGACAAAGGAGAATTATCAAATTCTCATTAAATTTATTCAATTTTATACTTCTTTATGCTGGAGTAAACCAGAAAAGTTTGGGGTGTTTGGTCTTTAATTGTGTTCATATTTGAAATGTCTTATTATGGGTGAAGTCACCACCAACAGTATTAGAAACTGAGATCAATTACTCATTTTCAAAATTGATGCATACCCTGCTAGTGCTATATGAACTTCGATAGTGTTGCAAATTGTCTAATCTGTGGTGTATATTTCAGGCTGACTGAGGAAGCTGGATCATGCACCATGGTTCTTGACAGCGTCCTTTCTTCTCCTCACAGGAGGTCCCCGTCATTCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTTGTGCAACGACATCGCTTCCTCCTGACAGCACTTGTCCTCCTAACTTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGACTGACTGGGACTCAAAAAGCTCAGTGTCATCTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAATTGAAAATTCTTTGA

mRNA sequence

ATGTTTGCTTGTCACTGCCTTGGAAAAAATTTGGAGCCATCTCTTGAACCTTCATGCCTTGCCTGCTTCTTGTTAGACTTCTTTGAATATGGATTTTTAATATCTAGGCTGACTGAGGAAGCTGGATCATGCACCATGGTTCTTGACAGCGTCCTTTCTTCTCCTCACAGGAGGTCCCCGTCATTCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTTGTGCAACGACATCGCTTCCTCCTGACAGCACTTGTCCTCCTAACTTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGACTGACTGGGACTCAAAAAGCTCAGTGTCATCTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAATTGAAAATTCTTTGA

Coding sequence (CDS)

ATGTTTGCTTGTCACTGCCTTGGAAAAAATTTGGAGCCATCTCTTGAACCTTCATGCCTTGCCTGCTTCTTGTTAGACTTCTTTGAATATGGATTTTTAATATCTAGGCTGACTGAGGAAGCTGGATCATGCACCATGGTTCTTGACAGCGTCCTTTCTTCTCCTCACAGGAGGTCCCCGTCATTCCGAAAGTCCTTTCCAAATGAGTTGGGTAGTTGGTCGACTCTTGTGCAACGACATCGCTTCCTCCTGACAGCACTTGTCCTCCTAACTTTTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGACTGACTGGGACTCAAAAAGCTCAGTGTCATCTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAATTGAAAATTCTTTGA

Protein sequence

MFACHCLGKNLEPSLEPSCLACFLLDFFEYGFLISRLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL*

Homology

[Close]

BLAST of CsaV3_7G031790 vs. NCBI nr
Match: KAE8646426.1 (hypothetical protein Csa_016913 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MFACHCLGKNLEPSLEPSCLACFLLDFFEYGFLISRLTEEAGSCTMVLDSVLSSPHRRSP 60
           MFACHCLGKNLEPSLEPSCLACFLLDFFEYGFLISRLTEEAGSCTMVLDSVLSSPHRRSP
Sbjct: 1   MFACHCLGKNLEPSLEPSCLACFLLDFFEYGFLISRLTEEAGSCTMVLDSVLSSPHRRSP 60

Query: 61  SFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSSCFGLTGTQKAQ 120
           SFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSSCFGLTGTQKAQ
Sbjct: 61  SFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSSCFGLTGTQKAQ 120

Query: 121 CHLELAKTSMAKGKLKIL 139
           CHLELAKTSMAKGKLKIL
Sbjct: 121 CHLELAKTSMAKGKLKIL 138

[Close]

BLAST of CsaV3_7G031790 vs. NCBI nr
Match: KAA0058699.1 (hypothetical protein E6C27_scaffold339G001690 [Cucumis melo var. makuwa] >TYK10505.1 hypothetical protein E5676_scaffold459G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 36  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 95
           RLTEE GSC MVLDSVLSSPHRRSPSFRKSFPNELGSWSTL+QRHRFLLTALVLLTFLCT
Sbjct: 17  RLTEEIGSCNMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCT 76

Query: 96  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           IYLYFAVTLGSSSSCFGLTGTQKAQC LELAKTS+AKGKLKIL
Sbjct: 77  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSIAKGKLKIL 119

[Close]

BLAST of CsaV3_7G031790 vs. NCBI nr
Match: XP_011659492.1 (uncharacterized protein LOC101216292 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 105
           MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG
Sbjct: 1   MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 106 SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL
Sbjct: 61  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

[Close]

BLAST of CsaV3_7G031790 vs. NCBI nr
Match: KAG6593358.1 (hypothetical protein SDJN03_12834, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-41
Identity = 96/107 (89.72%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 33  LISRLTEEAGSCTMVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLT 92
           L+  LTEE GSC MVLDSVLSSPHRRSPSFRK+F PNELGSWSTLVQRHRFLLTALVLLT
Sbjct: 12  LLILLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLT 71

Query: 93  FLCTIYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           FLCTIYLYFAVTLG SSSC GLTG QKAQC LELAKTSMAKGKLKIL
Sbjct: 72  FLCTIYLYFAVTLG-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 117

[Close]

BLAST of CsaV3_7G031790 vs. NCBI nr
Match: KAG7025704.1 (hypothetical protein SDJN02_12202, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 37  LTEEAGSCTMVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLTFLCT 96
           LTEE GSC MVLDSVLSSPHRRSPSFRK+F PNELGSWSTLVQRHRFLLTALVLLTFLCT
Sbjct: 11  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 70

Query: 97  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           IYLYFAVTLG SSSC GLTG QKAQC LELAKTSMAKGKLKIL
Sbjct: 71  IYLYFAVTLG-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 112

[Close]

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL
Match: A0A0A0K6S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.2e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 36  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 95
           RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT
Sbjct: 17  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 76

Query: 96  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL
Sbjct: 77  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL
Match: A0A5D3CG60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001550 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.5e-46
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 36  RLTEEAGSCTMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCT 95
           RLTEE GSC MVLDSVLSSPHRRSPSFRKSFPNELGSWSTL+QRHRFLLTALVLLTFLCT
Sbjct: 17  RLTEEIGSCNMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCT 76

Query: 96  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           IYLYFAVTLGSSSSCFGLTGTQKAQC LELAKTS+AKGKLKIL
Sbjct: 77  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSIAKGKLKIL 119

[Close]

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL
Match: A0A1S4E387 (uncharacterized protein LOC103499851 OS=Cucumis melo OX=3656 GN=LOC103499851 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 105
           MVLDSVLSSPHRRSPSFRKSFPNELGSWSTL+QRHRFLLTALVLLTFLCTIYLYFAVTLG
Sbjct: 1   MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 106 SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           SSSSC+GLTGTQKAQC LELAKTS+AKGKLKIL
Sbjct: 61  SSSSCYGLTGTQKAQCQLELAKTSIAKGKLKIL 93

[Close]

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL
Match: A0A6J1DQE0 (uncharacterized protein LOC111022141 OS=Momordica charantia OX=3673 GN=LOC111022141 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-37
Identity = 86/94 (91.49%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 105
           MVLDSVLSSPHRRSPSFRK F PNE GSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKPFPPNEFGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 106 GSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           GSSSSCFG+TG QK QC LELAK SMAKGKLKIL
Sbjct: 61  GSSSSCFGMTGVQKEQCRLELAKASMAKGKLKIL 94

[Close]

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL
Match: A0A6J1H8Z6 (uncharacterized protein LOC111460722 OS=Cucurbita moschata OX=3662 GN=LOC111460722 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 105
           MVLDSVLSSPHRRSPSFRK+F PNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 106 GSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 139
           G SSSC GLTG QKAQC LELAKTSMAKGKLKIL
Sbjct: 61  G-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 93

[Close]

BLAST of CsaV3_7G031790 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-24
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 105
           MVLD ++SSP RR    +K + +ELGSWSTL+QRH++LLTAL LL FLCT+YLYFAVTLG
Sbjct: 1   MVLDGLVSSPSRRQQCLKKQW-DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLG 60

Query: 106 S-SSSCFGLTGTQKAQCHLELAKTSMAKGKLK 137
           +  SSC+GLTG  KA C L+L + +++KGKLK
Sbjct: 61  ARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

[Close]

BLAST of CsaV3_7G031790 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 7.2e-21
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 46  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 105
           MVLD ++SSP RR  + +K + ++LGS ST+VQRHRFLLTA++LL FLCTIY+YFAVTLG
Sbjct: 1   MVLDGIVSSPLRRPHALKKQW-DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTLG 60

Query: 106 SSS-SCFGLTGTQKAQCHLELAKTSMAKGKLK 137
           +    C G+TG  KA C +E  + S + GKLK
Sbjct: 61  ARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

The following BLAST results are available for this feature:

BLAST of CsaV3_7G031790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646426.1	1.9e-71	100.00	hypothetical protein Csa_016913 [Cucumis sativus]	[more]
KAA0058699.1	1.3e-45	95.15	hypothetical protein E6C27_scaffold339G001690 [Cucumis melo var. makuwa] >TYK105...	[more]
XP_011659492.1	3.1e-42	100.00	uncharacterized protein LOC101216292 [Cucumis sativus]	[more]
KAG6593358.1	5.8e-41	89.72	hypothetical protein SDJN03_12834, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025704.1	1.0e-40	92.23	hypothetical protein SDJN02_12202, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_7G031790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G031790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S1	8.2e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1	[more]
A0A5D3CG60	6.5e-46	95.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E387	1.8e-40	95.70	uncharacterized protein LOC103499851 OS=Cucumis melo OX=3656 GN=LOC103499851 PE=...	[more]
A0A6J1DQE0	3.2e-37	91.49	uncharacterized protein LOC111022141 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1H8Z6	1.6e-36	93.62	uncharacterized protein LOC111460722 OS=Cucurbita moschata OX=3662 GN=LOC1114607...	[more]

BLAST of CsaV3_7G031790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	2.4e-24	63.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	7.2e-21	57.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774:SF1	EPHRIN-A3 PROTEIN	coord: 36..138
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 36..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G031790.1	CsaV3_7G031790.1	mRNA